BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21480.1
Length=3297
Score E
Sequences producing significant alignments: (Bits) Value
Ahg359673 jgi|Araly1|359673|fgenesh1_pg.C_scaffold_662000002 4145 0.0
Ahg930107 jgi|Araly1|930107|scaffold_302564.1 2514 0.0
> Ahg359673 jgi|Araly1|359673|fgenesh1_pg.C_scaffold_662000002
Length=2591
Score = 4145 bits (2244), Expect = 0.0
Identities = 2488/2605 (96%), Gaps = 20/2605 (1%)
Strand=Plus/Plus
Query 526 AAAAAGGTGGCTAGGTTCGCTTCAGTTCGTTCAGCAGCTTTTCGTGCTTCTGCTGTGGCA 585
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 3 AAAAAGGTGGCTAGGTTCGCTTCAGTTCGTTCATCAGCTTTTCGTGCTTCTGCTGTGGCA 62
Query 586 GCTCGTGTTGCAAACCAAAAATCTGCCAACACTGACTGTTCTACACTAATCAACTGTCAT 645
||||||| ||||| | | ||||||||||||||||||| |||||||||||||||
Sbjct 63 GCTCGTGCGGCAAA-C------C--CCAACACTGACTGTTCTACTCTAATCAACTGTCAT 113
Query 646 TCTTCTGGGAAAGGAACCACACATAATTCTGGTCTAGAAAATAGTGTTGGGGAAGTAGGG 705
||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 114 TCTTCTGGGAAAGGAGCCACACATAATTCTAGTCTAGAAAATAGTGTTGGAGAAGTAGGG 173
Query 706 AATCAGCAATCTCTTACCAGTTTATTTGTTGAAGAGAAAAAGGACTTAAGAACAGGaaaa 765
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||
Sbjct 174 AATCAGCAATCTCTTACCAGTATATTTGTTGAAGAGAAAAATGACTTAAGAACAGCAAAC 233
Query 766 aaaaCAGCGAGGAAGCTTTTCGTAGAGGATTTCCCTGAAGAAAAATT-TCATTCTACTGA 824
||||||||||||||||||||| | |||||||| ||||||| |||||| ||||||||||||
Sbjct 234 AAAACAGCGAGGAAGCTTTTCATTGAGGATTTGCCTGAAG-AAAATTGTCATTCTACTGA 292
Query 825 TTGCAATGTCGATCTGGGGAATTTGAGTTATATTGGCTCTCAAGAACCTGGTGAGGAATC 884
| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||
Sbjct 293 TGGCAATGTCGATCTGGGGAATTTGAGTTATATTGACTCTCAAGAACCTGGCGAGGCATC 352
Query 885 CCAGGCCAGTGCTCTTAACTTGGTTGATAAGCTCATTAGTGAGTGCCGTCTAGAGTTTGA 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 CCAGGCCAGTGCTCTTAACTTGGTTGATAAGCTCATTAGTGAGTGCCGTCTAGAGTTTGA 412
Query 945 TTTTGAAGTTCAAGCTGACTATGGAAGGAAAACAGAAGATAAATCAAAATTTGTTCAGAT 1004
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 413 TTTTGAAGTTGAAGCTGACTATGGAAGGAAAACAGAAGAAAAATCAAAATTTGTTCAGAT 472
Query 1005 TTTTAAAGGTCCACAAGAATTAGCAAAGAAGGTAAGTTACAAAAGTGGAGCTGTTGGAAA 1064
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 473 TTTTAAAGGTCCACAAGAATTAGCAAAGAAAGTAAGTTACAAAAGCGGAGCTGTTGGAAA 532
Query 1065 CAATATTTTCGACTGGGATGATAATCGTGAGGATGAAGGAGGGGGTGATATCTATCGTAG 1124
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CGATATTTTCGACTGGGATGATAATCGTGAGGATGAAGGAGGGGGTGATATCTATCGTAG 592
Query 1125 AAGAAAAGATGAATTCTTTGGCGTTGCAAGTAAAAGACGGGAATTTTCTAGCTTGCCTAG 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AAGAAAAGATGAATTCTTTGGCGTTGCAAGTAAAAGACGGGAATTTTCTAGCTTGCCTAG 652
Query 1185 AGAACAGAAAAGAGAACTGATACCAGTTGCAGTGGATAAAAGATGGGCTCGTTCTGATTC 1244
|||||||||||||||||||||||||||||| |||||||||||| ||||| | |||||||
Sbjct 653 AGAACAGAAAAGAGAACTGATACCAGTTGCTGTGGATAAAAGAAGGGCT--T-CTGATTC 709
Query 1245 CAAACTGTTGAAGCATAGTGTGACTAGGAGCCGAAAGAATATCCAGGGTGCTAAAAAGAA 1304
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 710 CAAACTGTTGCAGCATAGTGTGACTAGGAGCCGAAAAAATATCCAGGGTGCTAAAAAGAA 769
Query 1305 TCTTGGCAAAGAGTTAGATGAAGTTCGTGAAGCGGCAGTTTTAGGGAATGATACACAAGT 1364
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 770 TCTTGGCAAAGAGTTAGATGAAGTTCGTGAAGCGGTAGTTTTAGGGAATTATACACAAGT 829
Query 1365 GGCTGCTGAAGCGATTGATGATCTGTGCTCTGGAGACC-GTGGCAAATTTGATGGTGAGG 1423
|||||||||||||||||||||||||| |||||||| || ||||||| ||||||| |||||
Sbjct 830 GGCTGCTGAAGCGATTGATGATCTGTCCTCTGGAG-CCTGTGGCAAGTTTGATGCTGAGG 888
Query 1424 CGAGTTGTCTTACAGGAAAGAAACTGTCACCAGAAGAAGAGAGAGGATTTTCTCCCGGTG 1483
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 889 CGAGTTGTCTTACAGGAAAGAAACTGTCACCAGGAGAAGAGAGAGGATTTTCTCCCGGTG 948
Query 1484 GAGTCGTTACTAGACAATCCAAGGGAACTAAGAGGATTCAGGCTATGAGTAAAGATGAAT 1543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 GAGTCGTTACTAGACAATCCAAGGGAACTAAGAGGATTCAGGCTATGAGTAAAGATGAAT 1008
Query 1544 TGTTGaaaaaaaGAATGAAGAAGGCTAGTCCTAGTCCTGCTAAAGCTTGCCGGACGAATA 1603
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1009 TGTTGAAAAAAAGAATGAAGAAGGCTAGTCCAAGTCCTGCTAAAGCTTGCCGGAGGAATA 1068
Query 1604 TCGAAGGATCTTCAAATGGTGACCAGCTTAATAAAGAAGGTCCATGCTGCTGGAAGAGTA 1663
| ||||| |||| ||| |||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1069 TTGAAGGGTCTTTAAAGGGTGACCAGCTTGATAAAGAAGGTCCATGCTTCTGGAAGAGTA 1128
Query 1664 GGAAGGTCCAGACTGCTTCACGAGAAACTAAAAAGAATCTTGTTGACGAGTTTGATGAAG 1723
||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct 1129 GGAAGGTCCAGACTGCTTCACAAAAAACTAAAAAGAATCTTGTTGACGAGTTGGATGAAG 1188
Query 1724 TTTCTCAGGAAAGTAATACAGAAATGTTTGATAGGCATGAAGAAGCAGAAGCAGGCCCTG 1783
||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1189 TTTCTAAGGAAAGCAATACAGAAATTTTTGATAGGCATGAAGAAGCAGAAGCAGGCCCTG 1248
Query 1784 ATACACAAATGGCTGCTGAAGTGATGAATGCTCTGCACTCTGGGGACGGCAGGGAAATTG 1843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 ATACACAAATGGCTGCTGAAGTGATGAATGCTCTGCACTCTGGGGACGGCAGGGAAATTG 1308
Query 1844 ATCCTGAGCCAAATAATCTAATAGGTAAGAAATTGTTATTGGAAGGAGGCATTTCTAGGT 1903
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
Sbjct 1309 ATCCTGAGCCAAATAATCTAATAGGTAAGAAATTGTCACCGGAAGGAGGCATTTCTAGTT 1368
Query 1904 GTGGAGTCGTTACCAGAAAGTCCAAGAGGATCAAGGGGATTCAGGCTGTGGACAATGATG 1963
||||||||||||||||||| ||||| |||||||||||||||||||||||||| | |||||
Sbjct 1369 GTGGAGTCGTTACCAGAAAATCCAAAAGGATCAAGGGGATTCAGGCTGTGGATAGTGATG 1428
Query 1964 TTGAATCATTGAAACCAAAAAAC-AAGAAGGCTAGATCAATTCTTGCTAAGTCTTTTGAG 2022
||||||||||||||| ||||||| |||||||||||||||||||||| |||||||| ||||
Sbjct 1429 TTGAATCATTGAAAC-AAAAAACCAAGAAGGCTAGATCAATTCTTGGTAAGTCTTCTGAG 1487
Query 2023 AAGAATATGGATAGGTATTCAAAAAATGACAAAGTTGATACGCCAGATGAAGCTGTTGCG 2082
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
Sbjct 1488 AAGAATATGGATAGGTATTCGAAAAATGACAAAGTTGATATGCCAGATGAAGCTGTTGTG 1547
Query 2083 TCAACCACAGAAAAGAGGCAAGGAGAATTATCAAACAAACATTGTATGTCTAAGTTACTT 2142
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 TCAACTACAGAGAAGAGGCAAGGAGAATTATCAAACAAACATTGTATGTCTAAGTTACTT 1607
Query 2143 AAGCAATCACA-TAGAGGTGAAGCTGAGGTGTTGAATTATCCCAAGCGGAGAAGATCAGC 2201
||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 AAGAAATCA-AGTAGAGGTGAAGCTGAGGTGTTGAATTATCCCAAGCGGAGAAGATCAGC 1666
Query 2202 TCGTATTTCACAAGATCAGGTTAATGAGGCTGGGAGGAGTTCAGATCCCGCGTTTGATAC 2261
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1667 TCGTATTTCACAAGATCAGGTTAATGAGGCAGGGAGGAGTTCAGACCCCGCGTTTGATAC 1726
Query 2262 TCCAGCTAAGTCTAAGACGCCGTCAACAAATGTATCGCCTATATGCATGGGTGACGAGTA 2321
||||| |||||||||||| |||||||| ||||||||||||||||||||||||| |||||
Sbjct 1727 TCCAGTTAAGTCTAAGACACCGTCAACGAATGTATCGCCTATATGCATGGGTGGTGAGTA 1786
Query 2322 TCATAGACTTTCTTGCAAAGATTCATTTACATCACACACTACAAGGGAATTTCGTAGCTT 2381
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1787 TCATAGACTTTCTTGCAAGGATTCATTTACATCACACACTACAAGGGAATTTCGTAGCTT 1846
Query 2382 AACCGTACCAGTAGCGGAACCTATCTCCGAGACAAAGAGTACTAGAAAGAGAAGAGATTT 2441
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1847 AACCTTACCATTAGCGGAACCTATCTCCAAGACAAAGAGTACTAGAAAGAGAAGAGATTT 1906
Query 2442 GGGTAGTATATGTGTCTTGTTCAGCCAGCATCTTGATGAAGATGTGACCAAGCATCAGAA 2501
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 GGGTAGTATACGTGTCCTGTTCAGCCAGCATCTTGATGAAGATGTGACCAAGCATCAGAA 1966
Query 2502 GAAGATTTTGGCAAGGTTTGATATCTCGGAAGCTTCCTCCATGAAGGAGGCAACACACTT 2561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1967 GAAGATTTTGGCAAGGTTTGATATCTCGGAAGCTTCCTCCATGAAGGAGGCAACACACTT 2026
Query 2562 CATAGCTGATAACTTTACGCGCACAAGGAACATGCTAGAGGCAATCGCTTCAGGCAAGCC 2621
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2027 CTTAGCTGATAACTTTACGCGCACAAGGAACATGCTAGAGGCAATCGCTTCAGGCAAGCC 2086
Query 2622 AGTGGTCACAACACAATGGCTTGAAAGCATCGATCAAGTAAACATATACGTTGATGAGGA 2681
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 2087 AGTGGTCACAACACAATGGCTTGAAAGCATCGATCAAGTAAGCATATACGTTGACGAGGA 2146
Query 2682 TATGTATATACTCAGAGATTCAAAGAAGGAGAAGGAGTTCTGTTTCAACATGGGGGTTTC 2741
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2147 TATGTATATACTCAGAGATTCAAAAAAGGAGAAGGAGTTCTGTTTCAACATGGGGGTTTC 2206
Query 2742 TTTGGCTCGTGCACGCCAGTTTCCGCTACTACAGGGAAGAAGAGTTTTTATCACTCCAAA 2801
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2207 TTTGGCTCGTGCACGCCAGTTTCCGCTACTACAGGGGAGAAGAGTTTTTATCACCCCAAA 2266
Query 2802 TACAAAGCCTGCTTTAAACACAATCACTACTTTGGTTAAAGCAGTTCATGGACTGCCTGT 2861
||||||||||| ||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 2267 TACAAAGCCTGGTTTAAACACAATCACGACTTTGGTTAAGGCTGTTCATGGACTGCCTGT 2326
Query 2862 AGAAAGACTCGGAAGATCTTCCCTAAGCGAAGATAAGGTCCCAGAGAATCTTCTGGTCTT 2921
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 2327 AGAAAGACTCGGAAGATCTGCCCTAAGTGAAGATAAGGTCCCAGAGAATCTTCTGGTCTT 2386
Query 2922 ATCATGTGAAGAGGATCGCGCTATCTGTATACCCTTTCTGGAAAGAGGGGCCGAGGTATA 2981
||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||
Sbjct 2387 ATCATGTGAAGAGGATCGCGCTACCTGCATACCGTTTCTAGAAAGAGGGGCCGAGGTATA 2446
Query 2982 TAGCTCGGAGTTACTACTAAATGGGATAGTTACCCAAAGGCTTGAGTATGAGAGGTACCG 3041
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 2447 TAGCTCGGAGTTACTACTGAATGGGATAGTTACTCAAAGGCTTGAGTATGAGAGGTACCG 2506
Query 3042 TCTCTTCACAGACCATGTGAGAAGAACGCGGTCAACGATATGGATCAAAGACGGGAAAGG 3101
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2507 TCTCTTCACAGACCATGTGAGAAGAACGCGGTCAACGATATGGATCAAAGACGGCAAAGG 2566
Query 3102 TAAGTTCCAACGTCGTAGCGGGTAA 3126
|||||| ||||| ||||||||||||
Sbjct 2567 TAAGTTTCAACGCCGTAGCGGGTAA 2591
> Ahg930107 jgi|Araly1|930107|scaffold_302564.1
Length=2412
Score = 2514 bits (1361), Expect = 0.0
Identities = 1561/1655 (94%), Gaps = 23/1655 (1%)
Strand=Plus/Plus
Query 1 ATGGCTAAATCTAACCAAAACTTTTCTCCGTATGAAGAGACCCAGCCGATTGATTCTAAT 60
||||||||| | || |||||||||||| ||||| |||||||||| |||||||||||||||
Sbjct 22 ATGGCTAAAGCAAATCAAAACTTTTCTGCGTATCAAGAGACCCAACCGATTGATTCTAAT 81
Query 61 CCAC-CTTCTTCTTCTGATTCTGGCGAGGATAAAGATAGCTTGCTTGGGGATTGTGACAC 119
|| | ||||| ||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 82 CC-CTCTTCTCCTTCTGATTCTGGTGAAGATAAAGATAGCTTGCTTGGGGACTGTGACAC 140
Query 120 ACAACCTGTTGATGACAATGCTTTGATTAATGATCAGTATATGGAGACTCAGGTCATGGA 179
||||||| |||| ||| |||||| |||||||||||| |||||||||||||||||||| ||
Sbjct 141 ACAACCTTTTGAAGACGATGCTTGGATTAATGATCAATATATGGAGACTCAGGTCATTGA 200
Query 180 TACTGAATGTGATAATGAAGAATTTCTTCTTTGTAATGAAACTCAAGCAGTTGATTTGGG 239
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 201 TATTGAATGTGATAATGAAGAATTTCTTCTTTGTAATGAAACTCAAGCGGTTGATTTGGG 260
Query 240 ATTTGAAACCGGAGAAGAAGTACTTGTAGAGGGGAAACAGTTACTTGAAGCTTCTGATGG 299
|||||||| ||||||||| ||| |||||||||||| ||||||||||||||||||||||||
Sbjct 261 ATTTGAAAACGGAGAAGAGGTATTTGTAGAGGGGACACAGTTACTTGAAGCTTCTGATGG 320
Query 300 TTTGGCTACTCAGGTTTTGGATCTTTGTGATGATGAAGTTGTTGTGGATAGTGATGATGA 359
||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||
Sbjct 321 TTTGGCTACTCAGGTTTTGGATCTTTGTGCTGAGGAAGTTGTTGTGGATAGTGAGGATGA 380
Query 360 TGTTACTGATGTGTTGGAGGGCAACAGTGA-TCTCTCTGATAGTGATGACTCGGGTAGTA 418
|||||||||||| ||||||| ||||||||| | |||||||||||||||||||| ||||||
Sbjct 381 TGTTACTGATGTCTTGGAGGACAACAGTGAGT-TCTCTGATAGTGATGACTCGTGTAGTA 439
Query 419 AAGCGGAAACTGTGTTATCTAGTGAAGAGAATAGACAGGATGCTAATGAAAAGGTTAAAT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 AAGCGGAAACTGTGTTATCTAGTGAAGAGAATAGACAGGATGCTAATGAAAAGGTTAAAT 499
Query 479 CAGCAGTTGTCTTTGATGC---TTGGTCGAACGAACATGGAGTTTCTGGAAAAAAGGTGG 535
|| |||||| | ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 500 CAACAGTTGCCCTTGATGCTAATTGGTCGAACGAACATGGAGTTTCTGGAAAAAAGGTGG 559
Query 536 CTAGGTTCGCTTCAGTTCGTTCAGCAGCTTTTCGTGCTTCTGCTGTGGCAGCTCGTGTTG 595
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 560 CTAGGTTCGCTTCAGTTCGTTCATCAGCTTTTCGTGCTTCTGCTGTGGCAGCTCGTGCGG 619
Query 596 CAAACCAAAAATCTGCCAACACTGACTGTTCTACACTAATCAACTGTCATTCTTCTGGGA 655
|||| | | ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 620 CAAA-C------C--CCAACACTGACTGTTCTACTCTAATCAACTGTCATTCTTCTGGGA 670
Query 656 AAGGAACCACACATAATTCTGGTCTAGAAAATAGTGTTGGGGAAGTAGGGAATCAGCAAT 715
||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 671 AAGGAGCCACACATAATTCTAGTCTAGAAAATAGTGTTGGAGAAGTAGGGAATCAGCAAT 730
Query 716 CTCTTACCAGTTTATTTGTTGAAGAGAAAAAGGACTTAAGAACAGGaaaaaaaaCAGCGA 775
||||||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 731 CTCTTACCAGTATATTTGTTGAAGAGAAAAATGACTTAAGAACAGCAAACAAAACAGCGA 790
Query 776 GGAAGCTTTTCGTAGAGGATTTCCCTGAAGAAAAATT-TCATTCTACTGATTGCAATGTC 834
||||||||||| | |||||||| ||||||| |||||| ||||||||||||| ||||||||
Sbjct 791 GGAAGCTTTTCATTGAGGATTTGCCTGAAG-AAAATTGTCATTCTACTGATGGCAATGTC 849
Query 835 GATCTGGGGAATTTGAGTTATATTGGCTCTCAAGAACCTGGTGAGGAATCCCAGGCCAGT 894
||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||
Sbjct 850 GATCTGGGGAATTTGAGTTATATTGACTCTCAAGAACCTGGCGAGGCATCCCAGGCCAGT 909
Query 895 GCTCTTAACTTGGTTGATAAGCTCATTAGTGAGTGCCGTCTAGAGTTTGATTTTGAAGTT 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 GCTCTTAACTTGGTTGATAAGCTCATTAGTGAGTGCCGTCTAGAGTTTGATTTTGAAGTT 969
Query 955 CAAGCTGACTATGGAAGGAAAACAGAAGATAAATCAAAATTTGTTCAGATTTTTAAAGGT 1014
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 970 GAAGCTGACTATGGAAGGAAAACAGAAGAAAAATCAAAATTTGTTCAGATTTTTAAAGGT 1029
Query 1015 CCACAAGAATTAGCAAAGAAGGTAAGTTACAAAAGTGGAGCTGTTGGAAACAATATTTTC 1074
|||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||
Sbjct 1030 CCACAAGAATTAGCAAAGAAAGTAAGTTACAAAAGCGGAGCTGTTGGAAACGATATTTTC 1089
Query 1075 GACTGGGATGATAATCGTGAGGATGAAGGAGGGGGTGATATCTATCGTAGAAGAAAAGAT 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 GACTGGGATGATAATCGTGAGGATGAAGGAGGGGGTGATATCTATCGTAGAAGAAAAGAT 1149
Query 1135 GAATTCTTTGGCGTTGCAAGTAAAAGACGGGAATTTTCTAGCTTGCCTAGAGAACAGAAA 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 GAATTCTTTGGCGTTGCAAGTAAAAGACGGGAATTTTCTAGCTTGCCTAGAGAACAGAAA 1209
Query 1195 AGAGAACTGATACCAGTTGCAGTGGATAAAAGATGGGCTCGTTCTGATTCCAAACTGTTG 1254
|||||||||||||||||||| |||||||||||| ||||| | |||||||||||||||||
Sbjct 1210 AGAGAACTGATACCAGTTGCTGTGGATAAAAGAAGGGCT--T-CTGATTCCAAACTGTTG 1266
Query 1255 AAGCATAGTGTGACTAGGAGCCGAAAGAATATCCAGGGTGCTAAAAAGAATCTTGGCAAA 1314
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1267 CAGCATAGTGTGACTAGGAGCCGAAAAAATATCCAGGGTGCTAAAAAGAATCTTGGCAAA 1326
Query 1315 GAGTTAGATGAAGTTCGTGAAGCGGCAGTTTTAGGGAATGATACACAAGTGGCTGCTGAA 1374
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1327 GAGTTAGATGAAGTTCGTGAAGCGGTAGTTTTAGGGAATTATACACAAGTGGCTGCTGAA 1386
Query 1375 GCGATTGATGATCTGTGCTCTGGAGACC-GTGGCAAATTTGATGGTGAGGCGAGTTGTCT 1433
|||||||||||||||| |||||||| || ||||||| ||||||| |||||||||||||||
Sbjct 1387 GCGATTGATGATCTGTCCTCTGGAG-CCTGTGGCAAGTTTGATGCTGAGGCGAGTTGTCT 1445
Query 1434 TACAGGAAAGAAACTGTCACCAGAAGAAGAGAGAGGATTTTCTCCCGGTGGAGTCGTTAC 1493
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1446 TACAGGAAAGAAACTGTCACCAGGAGAAGAGAGAGGATTTTCTCCCGGTGGAGTCGTTAC 1505
Query 1494 TAGACAATCCAAGGGAACTAAGAGGATTCAGGCTATGAGTAAAGATGAATTGTTGaaaaa 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 TAGACAATCCAAGGGAACTAAGAGGATTCAGGCTATGAGTAAAGATGAATTGTTGAAAAA 1565
Query 1554 aaGAATGAAGAAGGCTAGTCCTAGTCCTGCTAAAGCTTGCCGGACGAATATCGAAGGATC 1613
||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||| ||
Sbjct 1566 AAGAATGAAGAAGGCTAGTCCAAGTCCTGCTAAAGCTTGCCGGAGGAATATTGAAGGGTC 1625
Query 1614 TTCAAATGGTGACCAGCTTAATAAAGAAGGTCCAT 1648
|| ||| |||||||||||| |||||||||||||||
Sbjct 1626 TTTAAAGGGTGACCAGCTTGATAAAGAAGGTCCAT 1660
Score = 1251 bits (677), Expect = 0.0
Identities = 727/752 (97%), Gaps = 0/752 (0%)
Strand=Plus/Plus
Query 2396 CGGAACCTATCTCCGAGACAAAGAGTACTAGAAAGAGAAGAGATTTGGGTAGTATATGTG 2455
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1661 CGGAACCTATCTCCAAGACAAAGAGTACTAGAAAGAGAAGAGATTTGGGTAGTATACGTG 1720
Query 2456 TCTTGTTCAGCCAGCATCTTGATGAAGATGTGACCAAGCATCAGAAGAAGATTTTGGCAA 2515
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1721 TCCTGTTCAGCCAGCATCTTGATGAAGATGTGACCAAGCATCAGAAGAAGATTTTGGCAA 1780
Query 2516 GGTTTGATATCTCGGAAGCTTCCTCCATGAAGGAGGCAACACACTTCATAGCTGATAACT 2575
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1781 GGTTTGATATCTCGGAAGCTTCCTCCATGAAGGAGGCAACACACTTCTTAGCTGATAACT 1840
Query 2576 TTACGCGCACAAGGAACATGCTAGAGGCAATCGCTTCAGGCAAGCCAGTGGTCACAACAC 2635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1841 TTACGCGCACAAGGAACATGCTAGAGGCAATCGCTTCAGGCAAGCCAGTGGTCACAACAC 1900
Query 2636 AATGGCTTGAAAGCATCGATCAAGTAAACATATACGTTGATGAGGATATGTATATACTCA 2695
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1901 AATGGCTTGAAAGCATCGATCAAGTAAGCATATACGTTGACGAGGATATGTATATACTCA 1960
Query 2696 GAGATTCAAAGAAGGAGAAGGAGTTCTGTTTCAACATGGGGGTTTCTTTGGCTCGTGCAC 2755
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1961 GAGATTCAAAAAAGGAGAAGGAGTTCTGTTTCAACATGGGGGTTTCTTTGGCTCGTGCAC 2020
Query 2756 GCCAGTTTCCGCTACTACAGGGAAGAAGAGTTTTTATCACTCCAAATACAAAGCCTGCTT 2815
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||
Sbjct 2021 GCCAGTTTCCGCTACTACAGGGGAGAAGAGTTTTTATCACCCCAAATACAAAGCCTGGTT 2080
Query 2816 TAAACACAATCACTACTTTGGTTAAAGCAGTTCATGGACTGCCTGTAGAAAGACTCGGAA 2875
||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 2081 TAAACACAATCACGACTTTGGTTAAGGCTGTTCATGGACTGCCTGTAGAAAGACTCGGAA 2140
Query 2876 GATCTTCCCTAAGCGAAGATAAGGTCCCAGAGAATCTTCTGGTCTTATCATGTGAAGAGG 2935
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2141 GATCTGCCCTAAGTGAAGATAAGGTCCCAGAGAATCTTCTGGTCTTATCATGTGAAGAGG 2200
Query 2936 ATCGCGCTATCTGTATACCCTTTCTGGAAAGAGGGGCCGAGGTATATAGCTCGGAGTTAC 2995
||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 2201 ATCGCGCTACCTGCATACCGTTTCTAGAAAGAGGGGCCGAGGTATATAGCTCGGAGTTAC 2260
Query 2996 TACTAAATGGGATAGTTACCCAAAGGCTTGAGTATGAGAGGTACCGTCTCTTCACAGACC 3055
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2261 TACTGAATGGGATAGTTACTCAAAGGCTTGAGTATGAGAGGTACCGTCTCTTCACAGACC 2320
Query 3056 ATGTGAGAAGAACGCGGTCAACGATATGGATCAAAGACGGGAAAGGTAAGTTCCAACGTC 3115
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 2321 ATGTGAGAAGAACGCGGTCAACGATATGGATCAAAGACGGCAAAGGTAAGTTTCAACGCC 2380
Query 3116 GTAGCGGGTAAAAGAGTAAATGTGATCAAACT 3147
|||||||||||||||| |||||||||||||||
Sbjct 2381 GTAGCGGGTAAAAGAGGAAATGTGATCAAACT 2412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124448263710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5