BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21481.1
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930108 jgi|Araly1|930108|scaffold_302565.1 326 6e-89
Ahg333373 jgi|Araly1|333373|fgenesh1_pm.C_scaffold_662000001 326 6e-89
Ahg930444 jgi|Araly1|930444|scaffold_302901.1 204 3e-52
Ahg923114 jgi|Araly1|923114|scaffold_104395.1 108 2e-23
> Ahg930108 jgi|Araly1|930108|scaffold_302565.1
Length=757
Score = 326 bits (176), Expect = 6e-89
Identities = 228/252 (90%), Gaps = 8/252 (3%)
Strand=Plus/Plus
Query 1 GCTAATCCTAAAGttttttttttATTTGAG-CGTGGACAGCAGAGT-G-TGGTCGGATTG 57
||||||||||||| |||||||||||||| | ||||||| ||||| | | ||||||||| |
Sbjct 216 GCTAATCCTAAAG-TTTTTTTTTATTTG-GCCGTGGACGGCAGACTGGCTGGTCGGATCG 273
Query 58 TGATGGAGCTCTTTGCAGACACGACACCACGAGCGGCGGAGAATTTCCGGGCCCTATGTA 117
|||| |||||||||||||| ||||| || ||| |||| ||||| ||||||||||||||||
Sbjct 274 TGATTGAGCTCTTTGCAGATACGACCCCGCGAACGGCAGAGAACTTCCGGGCCCTATGTA 333
Query 118 CACAGGGAGAAAGGGATGGGGAAGCTTGGTAAGCCACTCCACTACAAGGGATCAATCTTC 177
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 C-CGGGGAGAAAGGGATGGGGAAGCTTGGTAAGCCACTCCACTACAAGGGATCAATCTTC 392
Query 178 CACCGTCTTGAACC-TAATCAAATGTTCTGTGGAGGAGATTTCACTGCTGGTGATGGAAG 236
|||||||||| || || |||||||||||||||||||||| ||||||||||| |||||||
Sbjct 393 CACCGTCTTGTCCCCTA-TCAAATGTTCTGTGGAGGAGATATCACTGCTGGTAATGGAAG 451
Query 237 CGGAGGCGAATG 248
|||||||||||
Sbjct 452 TGGAGGCGAATG 463
> Ahg333373 jgi|Araly1|333373|fgenesh1_pm.C_scaffold_662000001
Length=561
Score = 326 bits (176), Expect = 6e-89
Identities = 228/252 (90%), Gaps = 8/252 (3%)
Strand=Plus/Plus
Query 1 GCTAATCCTAAAGttttttttttATTTGAG-CGTGGACAGCAGAGT-G-TGGTCGGATTG 57
||||||||||||| |||||||||||||| | ||||||| ||||| | | ||||||||| |
Sbjct 40 GCTAATCCTAAAG-TTTTTTTTTATTTG-GCCGTGGACGGCAGACTGGCTGGTCGGATCG 97
Query 58 TGATGGAGCTCTTTGCAGACACGACACCACGAGCGGCGGAGAATTTCCGGGCCCTATGTA 117
|||| |||||||||||||| ||||| || ||| |||| ||||| ||||||||||||||||
Sbjct 98 TGATTGAGCTCTTTGCAGATACGACCCCGCGAACGGCAGAGAACTTCCGGGCCCTATGTA 157
Query 118 CACAGGGAGAAAGGGATGGGGAAGCTTGGTAAGCCACTCCACTACAAGGGATCAATCTTC 177
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 C-CGGGGAGAAAGGGATGGGGAAGCTTGGTAAGCCACTCCACTACAAGGGATCAATCTTC 216
Query 178 CACCGTCTTGAACC-TAATCAAATGTTCTGTGGAGGAGATTTCACTGCTGGTGATGGAAG 236
|||||||||| || || |||||||||||||||||||||| ||||||||||| |||||||
Sbjct 217 CACCGTCTTGTCCCCTA-TCAAATGTTCTGTGGAGGAGATATCACTGCTGGTAATGGAAG 275
Query 237 CGGAGGCGAATG 248
|||||||||||
Sbjct 276 TGGAGGCGAATG 287
> Ahg930444 jgi|Araly1|930444|scaffold_302901.1
Length=771
Score = 204 bits (110), Expect = 3e-52
Identities = 174/204 (85%), Gaps = 7/204 (3%)
Strand=Plus/Plus
Query 47 TGGTCGGATTGTGATGGAGCTCTTTGCAGACACGACACCAC-GAGCGGCGGAGAATTTCC 105
||||||||| ||||| ||||||||||| ||||||| |||| || |||||||||| ||||
Sbjct 277 TGGTCGGATCGTGATAGAGCTCTTTGCCCACACGACCCCACGGA-CGGCGGAGAACTTCC 335
Query 106 GGGCCCTATGTACACAGG-GAGAAAGGGATGGGGAAGCT-TGGTAAGCCACTCCACTACA 163
| ||||| ||| || || |||||||| |||||||| | ||||||||||||||||||||
Sbjct 336 GAGCCCTCTGT--ACTGGCGAGAAAGGCATGGGGAA-ATGTGGTAAGCCACTCCACTACA 392
Query 164 AGGGATCAATCTTCCACCGTCTTGAACCTAATCAAATGTTCTGTGGAGGAGATTTCACTG 223
||||||||||| |||||||||| | || |||||||||| |||||||||||| ||||||
Sbjct 393 AGGGATCAATCATCCACCGTCTGGTTCCCGATCAAATGTTATGTGGAGGAGATATCACTG 452
Query 224 CTGGTGATGGAAGCGGAGGCGAAT 247
||||||| ||| |||||| ||||
Sbjct 453 CTGGTGACGGATCCGGAGGGGAAT 476
> Ahg923114 jgi|Araly1|923114|scaffold_104395.1
Length=593
Score = 108 bits (58), Expect = 2e-23
Identities = 155/199 (78%), Gaps = 17/199 (9%)
Strand=Plus/Plus
Query 57 GTGATGGAGCTCTTTGCAGACACGACACCACGAGCGGCGGAGAATTTCCGGGCCCTATGT 116
||||||||| ||||||| || || || ||| | |||||||||| ||||| ||||| ||
Sbjct 19 GTGATGGAGTTCTTTGCCGATACAACTCCAATAACGGCGGAGAACTTCCGTGCCCTCTG- 77
Query 117 ACACAGG-GAGAAAGGGAT-GGGGAAGCTTGGTAAGCCACTCCACTACAAGGGATCAATC 174
||| || |||| ||| || ||| || ||||||||||||||||||||||||||||| |
Sbjct 78 -CACCGGTGAGAGAGGAATAAGGG-AGAGTGGTAAGCCACTCCACTACAAGGGATCAAAC 135
Query 175 TTCCACCGTC-TTGAACCT-AATCAAATGTTCTG-TGGAGGAGATTTCACTGCT-GGTGA 230
|||||| || ||| | | ||| | |||| | |||||||||| ||||| || || ||
Sbjct 136 TTCCAC-GTAGTTGCTCATCAAT-ACATGTGG-GCTGGAGGAGATATCACT-CTCGG-GA 190
Query 231 T-GGAAGCGG-AGGCGAAT 247
|||| ||| ||||||||
Sbjct 191 ACGGAA-CGGGAGGCGAAT 208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8745111769
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5