BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G21490.1

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg342300 jgi|Araly1|342300|fgenesh1_pg.C_scaffold_3002063           584    1e-166


> Ahg342300 jgi|Araly1|342300|fgenesh1_pg.C_scaffold_3002063
Length=1479

 Score =  584 bits (316),  Expect = 1e-166
 Identities = 358/379 (94%), Gaps = 0/379 (0%)
 Strand=Plus/Plus

Query  33    CAGATATATGGATGTCGAATTCAATGTATCGATGCATTGCAACGACTGCGAGAGAAAAAT  92
             ||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct  1101  CAGGTATATGGATGTCGAATTCAATATATCGATGCATTGCAACGAATGCGAGAGAAAAAT  1160

Query  93    CGCTAGAGTTATTTCCAAATTCAAAGGAGTTGAAACGTTTGTGACGGATATGATTAACCA  152
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  1161  CGCTAGAGTTATTTCCAAATTCAAAGGAGTTGAAACGTTTGTGACGGATATGATTAATCA  1220

Query  153   CAAGGTTGTGGTCAGGGGAAAGATTGATCCGAACAAGTTGTTGAAGAAGCTTAAGAAGAA  212
              |||||| |||||| ||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct  1221  TAAGGTTATGGTCAAGGGTAAGATTGATCCGAACAAGTTGTTGAAGAAACTCAAGAAGAA  1280

Query  213   GACTGGCAAAAGAGTGAAGATTGTAGTTAAGGAAGAGAAAGGTGAAGAATCTAGTAAGGA  272
             |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||| ||
Sbjct  1281  GACTGGTAAAAGAGTGAAGATTGTAGTAAAGGAAGAGAAAGATGAAGAATCTAGTAAAGA  1340

Query  273   GAACGAAAATGTTCTCGAGATTGATATGGAATCGATTTGTTTAGGGGATCAGTCGATGTT  332
             | ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||
Sbjct  1341  GGACGAAAATGTTCTCGAGATTGATATGGAATCGATTGGTTTAAGGGATCAGTCGATTTT  1400

Query  333   CGGGTTTTGTGATTGGGAGATGGAGAAATTTATGGTGTTTAGTGATGAAAACGTCAAAGC  392
             |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||
Sbjct  1401  CGGGTTTTGTGATTGGGAGATGGAGAAATTTATGGTGTTTAGCGATGAAAACGCCAATGC  1460

Query  393   CATTTGTTCTATTTCTTAG  411
             |||||||||||||||||||
Sbjct  1461  CATTTGTTCTATTTCTTAG  1479



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14766212943


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5