BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21500.2
Length=2228
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479668 jgi|Araly1|479668|fgenesh2_kg.3__2369__AT3G21500.2 3038 0.0
Ahg493326 jgi|Araly1|493326|fgenesh2_kg.7__2759__AT4G15560.1 601 8e-171
> Ahg479668 jgi|Araly1|479668|fgenesh2_kg.3__2369__AT3G21500.2
Length=2227
Score = 3038 bits (1645), Expect = 0.0
Identities = 2069/2263 (91%), Gaps = 71/2263 (3%)
Strand=Plus/Plus
Query 1 ATTGATACTACCACTATATATACGTTGGAATGTCATATCAAACACAGATTAACAAATTCT 60
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATTAATACTACCACTATATATACGTTGGAATGTCATATCAAACACAGATTATCAAATTCT 60
Query 61 CTC-AAATGGCTCTCTCCGTATTTGCCTTTCCTTCTTACATAAATAGGAATCCTTCACTA 119
||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
Sbjct 61 CTCAAAATGGCTCTCTCCGTATTTGCCTTTCCTTCTTACATATATAGAAATCCTTCAATT 120
Query 120 AAATATCT-TAAACCTTCTTCTATGTCTTCTACAAAATA-TTCAAAAGTAAGAGCAACAA 177
|||||| | |||||| |||||||||||||||||||| | |||||||||||||||||| |
Sbjct 121 AAATAT-TGCAAACCTACTTCTATGTCTTCTACAAAA-ACTTCAAAAGTAAGAGCAAC-A 177
Query 178 CATTTTCAGAGAAAGGTGAATATTATTCAAACAGACCACCAACTCCTTTATTGGACACAA 237
| || |||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 178 -A-TTGCAGAGAAAGGTGAATATTATTCAAGTAGACCACCAACTCCTTTACTGGACACAA 235
Query 238 TCAACCATCCAATGCACATGAAAAATCTCTCCATCAAAGAACTCAAAGTTCTTTCGGACG 297
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 236 TCAACCATCCAATGCACATGAAGAATCTGTCCATCAAAGAACTCAAAGTTCTTTCTGACG 295
Query 298 AGTTGAGATCTGATGTTATTTTTAATGTTTCGAAAACTGGAGGACACTTGGGTTCGAATC 357
||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 296 AGTTGAGATCTGATGTTATCTTCAATGTTTCAAAAACTGGAGGACACTTGGGTTCGAATC 355
Query 358 TTGGTGTTGTTGAGCTCACCGTGGCCCTTCATTACATCTTCAATACTCCTCATGATAAGA 417
| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 356 TGGGTGTTGTTGAGCTCACTGTGGCCCTTCATTACATCTTCAATACTCCTCAAGATAAGA 415
Query 418 TCCTTTGGGATGTTGGTCATCAGTCTTATCCTCACAAGATTCTAACGGGAAGAAGAGGAA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TCCTTTGGGATGTTGGTCATCAGTCTTATCCTCACAAGATTCTAACGGGAAGAAGAGGAA 475
Query 478 AGATGAAGACAATAAGGCAGACCAATGGCCTCTCCGGCTACACCAAGCGAAGAGAGAGTG 537
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 476 AGATGAAGACAATAAGGCAGACCGATGGCCTCTCCGGCTACACCAAGAGAAGAGAGAGTG 535
Query 538 AGCATGACTCTTTTGGCACCGGGCACAGTTCGACCACACTATCTGCAGGCTTAGGGATGG 597
|||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 536 AGCATGACTCCTTTGGCACCGGGCACAGTTCTACCACAATATCTGCAGGCTTAGGGATGG 595
Query 598 CTGTAGGG-AGGGATTTGAAGGGGATGAACAACAGCGTGGTTTCGGTTATAGGCGATGGT 656
|||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 596 CTGT-GGGCAGGGATTTGAAGGGGATGAACAACAGCGTGGTTGCGGTTATAGGCGATGGC 654
Query 657 GCTATGACAGCTGGACAAGCTTATGAAGCAATGAACAATGCTGGCTACTTACACTCCAAC 716
|| |||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||
Sbjct 655 GCAATGACAGCTGGACAAGCTTATGAAGCTATGAACAATGCTGGCTACTTAGACTCTGAC 714
Query 717 ATGATTGTGATTCTCAACGACAACAAACAAGTATCTTTGCCTACTGCTAACTTGGATGGA 776
||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 715 ATGATTGTGATTCTCAACGACAATAAACAAGTCTCTTTGCCTACTGCTAACTTTGATGGA 774
Query 777 CCAACTCAACCTGTTGGAGCTCTGAGCTGTGCTCTTAGTAGGCTGCAATCTAATTGTGGA 836
||||||| ||||||||||||| | || | | | | ||| ||||| ||
Sbjct 775 CCAACTCCACCTGTTGGAGCT-T----TGAG--C----T--G-TGC--TCTAA--GT--- 813
Query 837 ATGATTAGAGAGACTAGTTCAACACTGTTTGAAGAACTTGGTTTTCACTATGTTGGTCCA 896
| | | | | |||| ||||||| |||||||||||||||||| | || ||||||||||||
Sbjct 814 A-G--T-G-G-GACTGGTTCAACTCTGTTTGAAGAACTTGGTCTCCATTATGTTGGTCCA 867
Query 897 GTTGATGGACACAACATAGATGATCTGGTCTCCATTCTTGAAACATTAAAGAGCACCAAA 956
|||||||| |||||||||||||||||||||||||||||||||| | |||| |||||||||
Sbjct 868 GTTGATGGGCACAACATAGATGATCTGGTCTCCATTCTTGAAAAAGTAAAAAGCACCAAA 927
Query 957 ACCATAGGACCGGTTCTTATCCATGTCGTGACTGAGAAAGGTCGTGGATATCCTTACGCA 1016
||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 928 TCCATAGGACCGGTTCTTATTCATGTCGTGACTGAGAAAGGTCGCGGATATCCCTACGCA 987
Query 1017 GAGAGAGCTGATGACAAGTATCATGGAGTTTTAAAATTTGATCCAGAAACAGGTAAACAG 1076
||| |||||||||||||||||||||||||||||||||| || |||| |||||||||||||
Sbjct 988 GAGGGAGCTGATGACAAGTATCATGGAGTTTTAAAATTCGAACCAGCAACAGGTAAACAG 1047
Query 1077 TTCAAAAATATTTCCAAGACTCAGTCTTACACTTCCTGTTTTGTGGAGGCCTTGATTGCA 1136
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1048 TTCAAAAACATTTCCAAGACTCAGTTTTACACTTCCTGTTTTGTGGAGGCCTTGACTGCG 1107
Query 1137 GAAGCAGAGGCAGACAAAGATATTGTTGCCATTCATGCAGCCATGGGAGGTGGAACCATG 1196
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1108 GAAGCAGAGGCAGACAAAGATATTGTTGCCATTCATGCAGCCACGGGAGGTGGAACAATG 1167
Query 1197 TTGAATCTCTTCGA-AAGCCGCTTTCCTACAAGGTGTTTCGATGTCGGCATAGCAGAACA 1255
|||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1168 TTGAATCTCTTCGAGAA-CCGCTTTCCTACAAGGTGTTTCGATGTTGGCATAGCAGAACA 1226
Query 1256 ACATGCAGTTACCTTCGCTGCTGGTCTTGCTTGCGAAGGACTTAAGCCCTTTTGTACAAT 1315
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1227 ACATGCAGTTACTTTCGCTGCTGGTCTTGCTTGCGAAGGACTTAGGCCCTTTTGTACAAT 1286
Query 1316 CTACTCATCTTTCATGCAACGGGCATATGATCAAGTTGTACATGATGTTGATCTACAGAA 1375
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1287 CTACTCTTCTTTCATGCAACGGGCTTATGATCAAGTTGTACATGATGTTGATCTACAGAA 1346
Query 1376 ACTGCCTGTGAGATTTGCAATAGATAGAGCAGGACTTATGGGAGCAGATGGTCCAACACA 1435
||| |||||||| |||||||| |||||||| |||||| | ||||| ||||||||||||||
Sbjct 1347 ACTACCTGTGAGGTTTGCAATCGATAGAGCTGGACTTGTTGGAGCTGATGGTCCAACACA 1406
Query 1436 TTGTGGAGCATTTGATGTGACGTTTATGGCATGTCTACCAAACATGATAGTAATGGCTCC 1495
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1407 TTGTGGAGCATTTGATGTGACGTTTATGGCATGTCTTCCAAACATGATAGTTATGGCTCC 1466
Query 1496 ATCTGATGAAGCAGAGCTTTTTAACATGGTTGCAACCGCTGCAGCTATTGATGACCGTCC 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 ATCTGATGAAGCAGAGCTTTTTAACATGGTTGCAACCGCTGCAGCTATTGATGACCGTCC 1526
Query 1556 TTCTTGCTTTCGATATCATAGAGGAAATGGTATTGGTGTTTCACTTCCTCCTGGTAACAA 1615
||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||
Sbjct 1527 TTCTTGCTTTCGATATCATAGAGGAAACGGTATCGGTGTTTCACTTCCTCCAGGCAACAA 1586
Query 1616 AGGTGTCCCTCTTCAGATTGGGAGAGGTAGGATACTAAGGGACGGCGAGAGGGTTGCGCT 1675
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1587 AGGTGTCCCTCTTCAGATTGGGAAAGGTAGGATACTAAGGGAAGGCGAGAGGGTTGCGCT 1646
Query 1676 TTTGGGCTATGGATCAGCGGTGCAAAGATGTTTAGAGGCTGCATCTATGCTAAGCGAACG 1735
||||||||| |||||||| || ||||||||||||||| |||| |||||||| ||||||||
Sbjct 1647 TTTGGGCTACGGATCAGCAGTTCAAAGATGTTTAGAGACTGCTTCTATGCTTAGCGAACG 1706
Query 1736 CGGATTAAAGATAACAGTAGCGGATGCAAGATTCTGTAAGCCGTTAGATGTTGCTCTCAT 1795
||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1707 CGGATTAAAGATAACTGTAGCGGATGCAAGATTTTGTAAGCCATTAGATGTTGCTCTCAT 1766
Query 1796 TCGTAGCTTAGCTAAATCACACGAGGTTTTGATCACGGTTGAAGAAGGTTCCATTGGAGG 1855
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1767 TCGTAGCTTAGCTAAATCACACGAGGTTTTAATCACGGTTGAAGAAGGTTCGATTGGAGG 1826
Query 1856 ATTTGGATCGCATGTGGTACAATTTCTTGCACTTGATGGCCTTCTTGATGGAAAGCTCAA 1915
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1827 ATTTGGATCGCATGTGGTACAATTTCTTGCACTTGATGGTCTTCTTGACGGAAAGCTCAA 1886
Query 1916 G-GTAT---A-TCGAAC-A--TG---G--AT--C-A-C-C--A--A----TGGATCAACT 1949
| | | | | | || | || | || | | | | | | ||||||||||
Sbjct 1887 GTGGAGGCCAATGGTACTACCTGACCGGTATATCGAACACGGATCACCAATGGATCAACT 1946
Query 1950 AGCTGAAGCTGGCCTCACAGCGTCTCACATTGCAGCCACTGCACTTAACTTAATGGGAAC 2009
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1947 GGCTGAAGCTGGCCTCACAGCGTCTCATATTGCAGCCACAGCACTTAACTTAATGGGAAC 2006
Query 2010 ACCTAGAGAAGCATTGTTTTGGGAGTAACGGGATCTCCATGAGAGTGCT-CT-TTCCACA 2067
|||||||||||| ||||||||||||||| | |||||||| || || || | ||| |
Sbjct 2007 ACCTAGAGAAGCCTTGTTTTGGGAGTAATGAGATCTCCAACAG-GTTCTTCAATTCTGTA 2065
Query 2068 AAAAACCTATATCGAGAGAACCCGCTTAGAAGAAGGATATATTATAGTTATATAACATCT 2127
| | | | |||||||| ||||| ||||||||||| ||||||| ||||||| ||||||||
Sbjct 2066 AGAGAG-TGTATCGAGAAAACCCACTTAGAAGAAGTATATATTGTAGTTATTTAACATCT 2124
Query 2128 TGAATAAATTCATTCACATTCAAGAATGA-TTT-TGTGTGTATTGCTTATATCTCGTTTC 2185
||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||
Sbjct 2125 TGAATAAATTCATTCACATTCAAGAATGAGTTTGTGTGTGTAGTGCTTATATCTCGTTTC 2184
Query 2186 AACTAGGCTAAGAAATAGAACAAATGGCTTTGACGTTTTCATC 2228
|||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 2185 AACTAGGCTAAGAAATAGAACAAATGGCATTGGCGTTTTCATC 2227
> Ahg493326 jgi|Araly1|493326|fgenesh2_kg.7__2759__AT4G15560.1
Length=2542
Score = 601 bits (325), Expect = 8e-171
Identities = 547/654 (84%), Gaps = 16/654 (2%)
Strand=Plus/Plus
Query 184 CAGAGAAAGGTGAATATTATTCAAACAGACCACCAACTCCTTTA-TTGGACACAATCAAC 242
||||||| |||||||||||||||||||||||||||||||| ||| || ||||| || |||
Sbjct 270 CAGAGAAGGGTGAATATTATTCAAACAGACCACCAACTCCATTACTT-GACACTATTAAC 328
Query 243 CATCCAATGCACATGAAAAATCTCTCCATCAAAGAACTCAAAGTTCTTTCGGACGAGTTG 302
||||||| |||||||||||||| || |||| || || ||| ||||| || ||| ||
Sbjct 329 TATCCAATTCACATGAAAAATCTTTCTGTCAAGGAGCTGAAACAACTTTCTGATGAGCTG 388
Query 303 AGATCTGATGTTATTTTTAATGTTTCGAAAACTGGAGGACACTTGGGTTCGAATCTTGGT 362
||||| ||||| || |||||||| |||||||| || ||||| ||||| |||| |||||||
Sbjct 389 AGATCAGATGTGATCTTTAATGTGTCGAAAACCGGTGGACATTTGGGGTCGAGTCTTGGT 448
Query 363 GTTGTTGAGCTCACCGTGGCCCTT-CATTACATCTTCAATACTCCTCATGATAAGATCCT 421
||||| ||||| || |||| | || |||||||| ||||||||||| || |||||||| ||
Sbjct 449 GTTGTGGAGCTTACTGTGG-CTTTGCATTACATTTTCAATACTCCACAGGATAAGATTCT 507
Query 422 TTGGGATGTTGGTCATCAGTCTTATCCTCACAAGATTCTAAC-GGGAAGAAGAGGAAAGA 480
||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||
Sbjct 508 TTGGGATGTTGGTCATCAGTCTTATCCTCACAAGATTCTTACTGGGA-GAAGAGGAAAGA 566
Query 481 TGAAGACAATAAGGCAGACCAATGGCCTCTCCGGCTACACCAAGCGAAGAGAGAGTGAGC 540
|| ||||| ||||| |||||||| ||||| || | ||| |||||| ||||||| || |
Sbjct 567 TGCCTACAATGAGGCAAACCAATGGTCTCTCGGGTTTCACGAAGCGAGGAGAGAGCGAAC 626
Query 541 ATGACT-CTTTTGGCACCGGGCACAGTTCGACCACACTATCTGCAGGCTTAGGGATGGCT 599
|||| | |||| || ||||| |||||||| |||||| ||||||| || ||||| |||||
Sbjct 627 ATGATTGCTTT-GGTACCGGACACAGTTCAACCACAATATCTGCTGGTTTAGGAATGGCG 685
Query 600 GTAGGGA-GGGATTTGAAGGGGATGAACAACAGCGTGGTTTCGGTTATAGGCGATGGTGC 658
||||| | ||||||||||||||| |||||||| |||||| | || || || ||||||||
Sbjct 686 GTAGG-ACGGGATTTGAAGGGGAAGAACAACAATGTGGTTGCTGTGATTGGTGATGGTGC 744
Query 659 TATGACAGCTGGACAAGCTTATGAAGCAATGAACAATGCTGGCTA-CTTACACTCCAACA 717
||||| || || || ||||||||||| |||||||| |||||||| ||| |||| | |
Sbjct 745 AATGACGGCAGGGCAGGCTTATGAAGCCATGAACAACGCTGGCTATCTTG-ACTCTGATA 803
Query 718 TGATTGTGATTCTCAACGACAACAAACAAGTATCTTTGCCTACTGCTAACTT-GGATGGA 776
||||||||||||| || |||||||| ||||| || || ||||| |||| ||| |||||||
Sbjct 804 TGATTGTGATTCTTAATGACAACAAGCAAGTCTCATTACCTACAGCTA-CTTTGGATGGA 862
Query 777 CCAACTCAACCTGTTGGAGC-TCTGAGCTGTGCTCTTAGTAGGCTGCAATCTAA 829
|||| || |||||||||||| | ||||| ||||||||||| || | || |||||
Sbjct 863 CCAAGTCCACCTGTTGGAGCAT-TGAGCAGTGCTCTTAGTCGGTTACAGTCTAA 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83874719490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5