BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21510.1
Length=784
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930112 jgi|Araly1|930112|scaffold_302569.1 832 0.0
> Ahg930112 jgi|Araly1|930112|scaffold_302569.1
Length=505
Score = 832 bits (450), Expect = 0.0
Identities = 478/492 (97%), Gaps = 0/492 (0%)
Strand=Plus/Plus
Query 56 AGAGAATATGGATTTGGTTCAGAAGCAGAAGAGTTTGCAAGATTACACCAAATCACTCTT 115
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 14 AGAGAAGATGGATTTGGTTCAGATGCAGAAGAGTTTGCAAGATTACACCAAATCACTCTT 73
Query 116 CTTAGAAGGGATTTTGGACAGCCAGTTCTTGCAGCTGCAACAACTACAAGATGAAAGCAA 175
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 74 CTTGGAAGGGATTTTGGACAGCCAGTTCTTGCAGCTGCAGCAACTACAAGATGAAAGCAA 133
Query 176 TCCAGATTTTGTTTCACAAGTTGTCACACTCTTCTTCCAAGACTCTGATAGGATTCTCAA 235
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 TCCTGATTTTGTTTCACAAGTTGTCACACTCTTCTTCCAAGACTCTGATAGGATTCTCAA 193
Query 236 TGATCTCTCACTTTCCCTAGATCAACAAGTTGTAGACTTTAAAAAAGTTGATCCCCATGT 295
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 194 TGATCTCTCACTTTCCCTAGATCAACAAGTTGTAGACTTCAAAAAAGTTGATCCCCATGT 253
Query 296 TCATCAACTCAAAGGTAGCAGCTCCAGTATAGGAGCACAGAGAGTTAAGAATGCTTGTGT 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 TCATCAACTCAAAGGTAGCAGCTCCAGTATAGGAGCACAGAGAGTTAAGAATGCTTGTGT 313
Query 356 TGTCTTCCGCAGCTTCTGCGAGCAGCAAAATGTCGAAGCATGTCATAGATGTTTGCAACA 415
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 314 TGTCTTCCGCAGCTTCTGCGAGCAACAAAATGTCGAAGCATGTCATAGATGTTTGCAACA 373
Query 416 AGTGAAGCAAGAGTATTATCTTGTGAAAAACAGATTAGAGACTCTGTTCAAGCTGGAGCA 475
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 374 AGTGAAGCAAGAGTACTATCTTGTGAAGAACAGATTAGAGACTCTGTTCAAGCTGGAGCA 433
Query 476 ACAGATTGTAGCTTCTGGTGGAATGATCCCGGCCGTCGAACTCGGATTTTGAGTGAATTT 535
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 434 GCAGATTGTAGCTTCTGGTGGAATGATCCCGGCAGTAGAACTCGGATTTTGAGTGAACTT 493
Query 536 CATAAACATCTC 547
|||||| |||||
Sbjct 494 CATAAAAATCTC 505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28935294003
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5