BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21520.1
Length=835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930113 jgi|Araly1|930113|scaffold_302570.1 996 0.0
> Ahg930113 jgi|Araly1|930113|scaffold_302570.1
Length=661
Score = 996 bits (539), Expect = 0.0
Identities = 628/669 (94%), Gaps = 14/669 (2%)
Strand=Plus/Plus
Query 22 TAACTCTAAGGTTCAAGCTCATGTCCGAAA---CTTCTTTGCTCA-TACCCAAAACAAAC 77
||||||| |||||||||||||||||||||| |||||||||| | ||||||||||||||
Sbjct 2 TAACTCT-AGGTTCAAGCTCATGTCCGAAACTTCTTCTTTGCT-ATTACCCAAAACAAAC 59
Query 78 TCTCCAGCTTCATCAGAAAACATGGCAAACACAAACAAATCCCTCACAGGCCTAGAGAGT 137
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 60 TCTCCAGCTTCATCAGAAACCATGG------CAAACAAATCCCTCACAGGCCTAGAGAGT 113
Query 138 CTTATAAAGCTTCTCCCAACGGGAACACTCTTTATCTACCTTCTACTTAACCCTGTCCTC 197
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 114 CTTATAAAGCTTCTCCCAACGGGAACACTCTTTATCTACCTTTTACTTAACCCTGTCCTC 173
Query 198 ACTAACGACGGTGAATGCTCCACAGGTAATAAGGTCATGTCGAGCATTCTTGTCGCCCTT 257
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 174 ACTAACGACGGTGAATGCTCCACGGGTAATAAGGTCATGTCGAGCATTCTTGTCGCGCTT 233
Query 258 TGCAGCTTTTCCTGCGTCTTCTCATGCTTTACCGATAGTTTCAAAGGCGTTGACGGATCA 317
|||||||| |||||||| || ||||||||||| ||||||||||||||||| |||||||||
Sbjct 234 TGCAGCTTCTCCTGCGTGTTTTCATGCTTTACTGATAGTTTCAAAGGCGTCGACGGATCA 293
Query 318 AGAAAGTTCGGTATAGTCACCAAGAAAGGTCTTTGGACTTACGCGGAGCCAGGATCCGTG 377
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 294 AGAAAGTTCGGTATAGTCACCAAGAAGGGTCTTTGGACTTACGCGGAGCCAGGATCCGTG 353
Query 378 GATTTATCCAAGTACAAGCTTAGGAT-AGCGGATTTCGTTCATGCGGGTTTCGTGCTGGC 436
||||| |||||||||||||| ||||| | |||||||||||||||||||||||||||| ||
Sbjct 354 GATTTGTCCAAGTACAAGCTCAGGATCA-CGGATTTCGTTCATGCGGGTTTCGTGCTAGC 412
Query 437 TGTGTTTGGTACACTGGTGCTGCTTGACGCTAATACCGCGAGCTGCTTTTATCCTCGGTT 496
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TGTGTTTGGTGCACTGGTGTTGCTTGACGCTAATACCGCGAGCTGCTTTTATCCTCGGTT 472
Query 497 CAGGGAAACACAGAAGACACTTGTCATGGCTTTGCCTCCTGCCGTGGGTGTTGCCTCAGC 556
||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 473 CAGGGAAACGCAAAAGACACTTGTCATGGCTTTGCCTCCAGCCGTGGGTGTTGCCTCAGC 532
Query 557 CACTATCTTTGCTTTGTTTCCGAGCAAACGAAGTGGAATCGGGTACGCGCCAATTGCTGA 616
|||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 533 TGCTATCTTTGCTTTGTTTCCGAGCAAACGGAGTGGAATCGGGTACGCACCAATCGCTGA 592
Query 617 GGAGGTAGGTGCTGAAGAGGAGACCAAGAAAGCCTCGGTCTCTGCCTAAGATCGGTTACC 676
|||||||| ||||||||||||||||||||||| ||| ||||||||||||||| |||||||
Sbjct 593 GGAGGTAGCTGCTGAAGAGGAGACCAAGAAAGGCTCTGTCTCTGCCTAAGATTGGTTACC 652
Query 677 TCAGTTGTT 685
|||||||||
Sbjct 653 TCAGTTGTT 661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30879562770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5