BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21520.1 Length=835 Score E Sequences producing significant alignments: (Bits) Value Ahg930113 jgi|Araly1|930113|scaffold_302570.1 996 0.0 > Ahg930113 jgi|Araly1|930113|scaffold_302570.1 Length=661 Score = 996 bits (539), Expect = 0.0 Identities = 628/669 (94%), Gaps = 14/669 (2%) Strand=Plus/Plus Query 22 TAACTCTAAGGTTCAAGCTCATGTCCGAAA---CTTCTTTGCTCA-TACCCAAAACAAAC 77 ||||||| |||||||||||||||||||||| |||||||||| | |||||||||||||| Sbjct 2 TAACTCT-AGGTTCAAGCTCATGTCCGAAACTTCTTCTTTGCT-ATTACCCAAAACAAAC 59 Query 78 TCTCCAGCTTCATCAGAAAACATGGCAAACACAAACAAATCCCTCACAGGCCTAGAGAGT 137 ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 60 TCTCCAGCTTCATCAGAAACCATGG------CAAACAAATCCCTCACAGGCCTAGAGAGT 113 Query 138 CTTATAAAGCTTCTCCCAACGGGAACACTCTTTATCTACCTTCTACTTAACCCTGTCCTC 197 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 114 CTTATAAAGCTTCTCCCAACGGGAACACTCTTTATCTACCTTTTACTTAACCCTGTCCTC 173 Query 198 ACTAACGACGGTGAATGCTCCACAGGTAATAAGGTCATGTCGAGCATTCTTGTCGCCCTT 257 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 174 ACTAACGACGGTGAATGCTCCACGGGTAATAAGGTCATGTCGAGCATTCTTGTCGCGCTT 233 Query 258 TGCAGCTTTTCCTGCGTCTTCTCATGCTTTACCGATAGTTTCAAAGGCGTTGACGGATCA 317 |||||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||| Sbjct 234 TGCAGCTTCTCCTGCGTGTTTTCATGCTTTACTGATAGTTTCAAAGGCGTCGACGGATCA 293 Query 318 AGAAAGTTCGGTATAGTCACCAAGAAAGGTCTTTGGACTTACGCGGAGCCAGGATCCGTG 377 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 294 AGAAAGTTCGGTATAGTCACCAAGAAGGGTCTTTGGACTTACGCGGAGCCAGGATCCGTG 353 Query 378 GATTTATCCAAGTACAAGCTTAGGAT-AGCGGATTTCGTTCATGCGGGTTTCGTGCTGGC 436 ||||| |||||||||||||| ||||| | |||||||||||||||||||||||||||| || Sbjct 354 GATTTGTCCAAGTACAAGCTCAGGATCA-CGGATTTCGTTCATGCGGGTTTCGTGCTAGC 412 Query 437 TGTGTTTGGTACACTGGTGCTGCTTGACGCTAATACCGCGAGCTGCTTTTATCCTCGGTT 496 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 413 TGTGTTTGGTGCACTGGTGTTGCTTGACGCTAATACCGCGAGCTGCTTTTATCCTCGGTT 472 Query 497 CAGGGAAACACAGAAGACACTTGTCATGGCTTTGCCTCCTGCCGTGGGTGTTGCCTCAGC 556 ||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 473 CAGGGAAACGCAAAAGACACTTGTCATGGCTTTGCCTCCAGCCGTGGGTGTTGCCTCAGC 532 Query 557 CACTATCTTTGCTTTGTTTCCGAGCAAACGAAGTGGAATCGGGTACGCGCCAATTGCTGA 616 |||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| Sbjct 533 TGCTATCTTTGCTTTGTTTCCGAGCAAACGGAGTGGAATCGGGTACGCACCAATCGCTGA 592 Query 617 GGAGGTAGGTGCTGAAGAGGAGACCAAGAAAGCCTCGGTCTCTGCCTAAGATCGGTTACC 676 |||||||| ||||||||||||||||||||||| ||| ||||||||||||||| ||||||| Sbjct 593 GGAGGTAGCTGCTGAAGAGGAGACCAAGAAAGGCTCTGTCTCTGCCTAAGATTGGTTACC 652 Query 677 TCAGTTGTT 685 ||||||||| Sbjct 653 TCAGTTGTT 661 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30879562770 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5