BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21530.1
Length=1600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479672 jgi|Araly1|479672|fgenesh2_kg.3__2373__AT3G21530.1 2484 0.0
> Ahg479672 jgi|Araly1|479672|fgenesh2_kg.3__2373__AT3G21530.1
Length=1600
Score = 2484 bits (1345), Expect = 0.0
Identities = 1518/1602 (95%), Gaps = 10/1602 (1%)
Strand=Plus/Plus
Query 1 ATTGATATGATATTATAGTCTTGTTGTTTGTTTAATTGTCTCATGAAAAGTTCAAATCTT 60
|||||||||| || ||||||||||||||||||| ||||||| |||||||||| |||||
Sbjct 1 ATTGATATGACATCATAGTCTTGTTGTTTGTTTGATTGTCTTATGAAAAGTTTGTATCTT 60
Query 61 TGTTTTGAAAACTCTCAAAGTGTTAATCTTTTGTAGCTGTTTCCATTTTTTGAAGCAGAA 120
||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 TGTTTGGAAAGCTCTCAAAGTGTTAATCTTTTGTAGCTGTTTCTATTTTTTGAAGCAGAA 120
Query 121 TAACAGAGAGATTACATGTTGTGTGTGTTTAGAAGGAAGCTTGGTTGCCTTTTTTCAAGA 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 TAACAGAGAGATTACATGTTGTGTGTGTTTAGAAGGAAGCTTGGTTGCTTTTTTTCAAGA 180
Query 181 CTTAGATGGGTTATCAAGAAACGGGTGAGGGCTAGAGTTATAGTCAGGAGGTTCAGGAAA 240
|| ||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 181 ATTCGATGGGTGATCAAGAAACGGGTGAGAGCCAGAGTTATAGTCAGGAGGTTCAGGAAA 240
Query 241 GCAAGGTGGAGAGCTCGAAGAAAAGAGAGTCCGGAATCTGAAGTTTCTTCTATCCATCTG 300
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 GCAAGGTGGAGAGCTCGAAGAAAAGAGAGTCCGGAATCCGAAGTTTCTTCTATCCATCTA 300
Query 301 AGCTCAAACTCTGGAAGACATATTCGGGTTGCAACGTTTAACGTGGCTATGTTCTCACTT 360
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 AGCTCAAACTCTAGAAGACATATTCGGGTTGCAACGTTTAACGTGGCGATGTTCTCACTT 360
Query 361 GCGCCTGTTGTGCAAACCATGGAGGAAACAGCTTTTCTTGGTCATCTAGATAGCAGCAAC 420
|||||||||||||||| ||| ||||||||| |||||||||||||| ||||||||| ||||
Sbjct 361 GCGCCTGTTGTGCAAAACATAGAGGAAACAACTTTTCTTGGTCATATAGATAGCAACAAC 420
Query 421 ATCACATGCCCTTCTCCAAAAGGGATTCTGAAGCAGTCTCCATTACATTCTTCTGCAGTC 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 ATCACATGCCCTTCTCCAAAAGGGATTCTGAAGCAGTCTCCTTTACATTCTTCTGCAGTC 480
Query 481 AGGAAACCAAAGGTTTGCATTAATCTCCCAGACAATGAGATTTCCTTAGCACAGAGCTAC 540
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 AGGAAACCAAAGGTCTGTATTAATCTTCCAGACAATGAGATTTCCTTAGCACAGAGCTAC 540
Query 541 AGCTTTCTGAGTATGGTAGAGAATGATAACGACGGGAAGGAAAACAGAGGAAGTCTCTCG 600
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 541 AGCTTTCTGAGTATGGTGGAGAATGATAACGACGGGAAGGAAAACAGAGGAAGTATCTCT 600
Query 601 ATGAGATCTCCCGTGTGTCTTCCCTCTTGTTGGTGGGACCAAGAAAGCTTTAACGGATAC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATGAGATCTCCCGTGTGTCTTCCCTCTTGTTGGTGGGACCAAGAAAGCTTTAACGGATAC 660
Query 661 AGCAGCAGAAGAAGCATAGCTGAATTGTTAAGAGAGTTGGATGCAGACATCTTGGCTTTA 720
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 AGCAGCAGAAGAAGCATAGCTGAGTTGTTAAGAGAGTTGGATGCAGACATCTTGGCTTTA 720
Query 721 CAAGACGTGAAAGCAGAGGAAGAGACACTTATGAAACCATTATCAGATTTGGCTTCCGCC 780
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 721 CAAGACGTGAAAGCAGAGGAAGAGACTCTTATGAAGCCATTATCAGATTTGGCTTCTGCC 780
Query 781 TTAGGTATGAAATACGTGTTTGCAGAGAGCTGGGCGCCTGAGTATGGAAACGCCATACTA 840
|||||||||||||| || |||||||||||||||||||| |||||||| |||||||| ||
Sbjct 781 TTAGGTATGAAATATGTTTTTGCAGAGAGCTGGGCGCCGGAGTATGGCAACGCCATTCTG 840
Query 841 TCAAAATGGCCCATAAAGAAGTGGAGAGTTCAGAGAATTGCTGATGTAGATGATTTTAGG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 841 TCAAAATGGCCCATAAAGAAGTGGAGAGTTCAGAGAATTGCTGATGTAGATGACTTTAGG 900
Query 901 AATGTGTTGAAGGTGACTGTAGAGATCCCATGGGCTGGAGATGTAAATGTGTATTGTACT 960
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 901 AATGTGTTGAAGGTGACTGTAGAGGTCCCATGGGCTGGAGATGTTAATGTGTATTGTACT 960
Query 961 CAACTTGACCATCTAGATGAGAACTGGCGTATGAAGCAGATCGATGCAATTACTCGAGGA 1020
||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 961 CAACTTGACCATCTAGATGAGAACTGGCGGATGAAGCAAATCGATGCAATAACTCGAGGA 1020
Query 1021 GACGAATCTCCCCACATCCTCCTTGGAGGCTTGAATTCTCTTGATGGCTCTGATTATTCC 1080
|| |||||||| |||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct 1021 GATGAATCTCCTCACATCTTGCTGGGAGGCTTGAATTCTCTTGATGGCTCTGATTATTCC 1080
Query 1081 ATAGCAAGATGGAACCAC--A-T---CGTAAAGTATTACGAGGATTCTGGAAAGCCGACG 1134
|||||||||||||||||| | | |||||||||||||||||||||||||| |||||
Sbjct 1081 ATAGCAAGATGGAACCACATATTAAAGGTAAAGTATTACGAGGATTCTGGAAAACCGACA 1140
Query 1135 CCTAGAGTTGAAGTGATGAGGTTTCTCAAGGGAAAAGGATACTTGGATTCAAAAGAATTT 1194
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CCTAGAGTTGAAGTGATGAGATTTCTCAAGGGAAAAGGATACTTGGATTCAAAAGAATTT 1200
Query 1195 GCAGGAGAATGTGAGCCTGTAGTCATTATTGCCAAAGGACAAAATGTACAAGGAACATGC 1254
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GCAGGAGAATGTGAGCCTGTTGTCATTATTGCCAAAGGACAAAATGTACAAGGAACATGC 1260
Query 1255 AAGTACGGGACACGGGTCGATTACATTCTGGCATCTCCAGAGTCACCTTACGAATTTGTT 1314
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1261 AAGTACGGGACACGGGTCGATTACATTCTGGCATCTCCAGAGTCACCTTACGAATTCGTT 1320
Query 1315 CCTGGCTCGTACTCAGTTGTTTCTTCCAAAGGTACTTCTGATCATCATATAGTCAAAGTC 1374
|| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CCAGGCTCATATTCAGTTGTTTCTTCCAAAGGTACTTCTGATCATCATATAGTCAAAGTC 1380
Query 1375 GATTTAGTTATAACCAAAGAGCGATCTCGAGGTAACTTCAAACATTCACGCAAGAAAGCA 1434
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||
Sbjct 1381 GATTTAGTTATAACCAAAGAGCGATCTCGAGGTAGCTTCAAACATTCGCGCAAGAAGGCA 1440
Query 1435 AAGCAGAAGATCTTTCAGATAAAAGCTAATTTGATGTC-GAAAGATACATGGAAACTAGG 1493
|||||||||||||||||||| ||||||||||||||||| | | |||||||||||||||||
Sbjct 1441 AAGCAGAAGATCTTTCAGATTAAAGCTAATTTGATGTCAGGA-GATACATGGAAACTAGG 1499
Query 1494 AAATCTGATGTCTTCATAAAGTTTGGACACTGATTAAGAAACAACACTTGTGT-ATATGA 1552
|||||| |||||||||||| |||||| |||| |||||| |||||||||||| | ||||||
Sbjct 1500 AAATCTTATGTCTTCATAATGTTTGGCCACTAATTAAGGAACAACACTTGT-TCATATGA 1558
Query 1553 TAACGTTTATTCCCATCATATTAAGATGCAATACAACATTTA 1594
||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1559 TAACGTTTATTCCAATCATATTAAGATACAATACAACATTTA 1600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59954045630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5