BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21550.1
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930116 jgi|Araly1|930116|scaffold_302573.1 911 0.0
> Ahg930116 jgi|Araly1|930116|scaffold_302573.1
Length=598
Score = 911 bits (493), Expect = 0.0
Identities = 562/595 (94%), Gaps = 6/595 (1%)
Strand=Plus/Plus
Query 46 AAGAAGAACaa-aaaaaTGTCGAAAACATTCAAAGCCATAAGAGACCGGACATATTCAGG 104
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 AAGAACAACAACGAAAATGTCGAAAACATTCAAAGCCATAAGAGACCGGACATATTCAGG 64
Query 105 CGTAGGAGACCTCATCAAGCTCCTCCCGACCGGAACCGTCTTCTTGTTCCAATTTTTAAA 164
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 65 CGTAGGAGACCTCATCAAGCTCCTCCCGACCGGAACCGTCTTCTTGTTCCAATTCTTAAA 124
Query 165 CCCTGTCCTAACCAACAATGGACATTGCCTCCTCATCAACAAATACTTAACCGGAGTTCT 224
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 125 CCCTGTCCTAACCAACAACGGACATTGCCTCCTCATCAACAAATACTTAACCGGAGCTCT 184
Query 225 CATCGTTATTTGTGCCTTCTCTTGTTGCTTCACTTGCTTCACCGATAGTTACCGAACAAG 284
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 185 CATCGTTGTTTGTGCCTTCTCTTGTTGCTTTACTTGCTTCACCGATAGTTACCGAACAAG 244
Query 285 AGACGGTTACGTTCATTATGGAGTTGCCACCGTGAAGGGTCTTTGGCCAGATTCATCTTC 344
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 245 AGACGGTTACGTTCATTATGGAGTTGCTACCGTGAAGGGTCTCTGGCCAGATTCGTCTTC 304
Query 345 AGTGGATTTGTCTTCGAAAAGGCTTAGAGTTGGAGATTTCGTTCACGCTTTCTTCTCTCT 404
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 305 AGTGGATTTGTCTTCGAAACGGCTTAGAGTTGGAGATTTCGTTCACTCTTTCTTCTCTCT 364
Query 405 TATCGTGTTCAGTGTTATTTCCTTGTTGGATGCAAACACCGTGAATTGTTTCTATCCTGG 464
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 365 TATCGTGTTCAGTGTTATATCCTTGTTGGATGCAAACACTGTGAATTGTTTCTATCCTGG 424
Query 465 CTTTGGCTCCGCTGGGAAGATCTTTCTCATGGTTTTGCCTCCGGTGATCGGAGTTATCTC 524
||||| || | |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 425 ATTTGGTTCTACCGGGAAGATCTTTCTTATGGTTTTGCCTCCGGTGATTGGAGTTATCTC 484
Query 525 CGGTGCTGTTTTCACGGTGTTCCCTAGTAGACGTCACGGAATTGGGAATCCCTCGGACCA 584
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 485 CGGTGCTGTCTTCACGGTGTTCCCTAGTAGACGTCATGGAATTGGGAATCCCTCGGACCA 544
Query 585 CAGTGAGGATGATGCTTCCGAGAT-GA-AA-TGATAGTATATGATTTTATACTAT 636
|| ||||||||||||||||||||| || || |||| ||||| |||| | |||||
Sbjct 545 CAATGAGGATGATGCTTCCGAGATAGAGAAATGAT-GTATAAAATTTCA-ACTAT 597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31070177355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5