BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21560.1
Length=1772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479675 jgi|Araly1|479675|fgenesh2_kg.3__2376__AT3G21560.1 2551 0.0
> Ahg479675 jgi|Araly1|479675|fgenesh2_kg.3__2376__AT3G21560.1
Length=1720
Score = 2551 bits (1381), Expect = 0.0
Identities = 1613/1724 (94%), Gaps = 20/1724 (1%)
Strand=Plus/Plus
Query 31 caaaacaaaaacagagcacacaaaaagagaaaccaagttttctt-aaaaaTGGAGCTAGA 89
|||||||||||||||||| |||||||||||||||||||||| || || |||||| |||||
Sbjct 1 CAAAACAAAAACAGAGCATACAAAAAGAGAAACCAAGTTTT-TTGAAGAATGGAACTAGA 59
Query 90 A-----T-CT--TCT-CCTCCTCTACCTCCTCATGTGATGCTCGTATCTTTTCCAGGGCA 140
| | || ||| |||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 60 ATCTTCTCCTCCTCTACCTCCTCTACCTCCTCATGTGATGCTTGTATCATTCCCAGGGCA 119
Query 141 AGGCCACGTTAATCCACTTCTTCGTCTTGGTAAGCTCTTAGCTTCAAAGGGTTTGCTCAT 200
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 120 AGGCCACGTTAATCCACTTCTTCGTCTCGGCAAGCTCTTAGCTTCAAAGGGTTTACTCAT 179
Query 201 AACCTTCGTCACCACTGAGTCATGGGGCAAAAAGATGCGAATCTCCAACAAAATCCAAGA 260
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AACCTTCGTCACCACAGAGTCATGGGGCAAAAAGATGCGAATCTCCAACAAAATCCAAGA 239
Query 261 CCGTGTCCTCAAACCGGTTGGTAAAGGCTATCTCCGGTATGATTTCTTCGACGACGGGCT 320
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 240 CCGTGTCCTCAAACCGGTTGGTAAAGGCTATCTCCGGTACGATTTTTTCGACGACGGGCT 299
Query 321 TCCTGAAGACGACGAAGCTAGCAGAACCAACTTAACCATCCTCCGACCACATCTAGAGCT 380
|||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||
Sbjct 300 TCCTGAAGACGACGAAGCTAGCAGAACCGACTTAACCATCCTCCGACCACAACTCGAGCT 359
Query 381 GGTCGGCAAAAGAGAGATCAAGAACCTTGTGAAACGTTACAAGGAAGTAACGAAACAGCC 440
|||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 360 GGTCGGTAAAAGAGAGATCAAGAACCTTGTGAAACGTTACGCGGAAGTGACGAAACAGCC 419
Query 441 CGTGACATGTCTTATCAACAACCCTTTCGTCTCTTGGGTCTGTGACGTGGCAGAAGATCT 500
|| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 AGTAACATGTCTCATCAACAACCCTTTCGTCTCTTGGGTCTGTGACGTGGCTGAAGATCT 479
Query 501 TCAAATCCCTTGTGCTGTTCTTTGGGTTCAATCTTGTGCCTGCTTAGCTGCTTATTACTA 560
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 480 TCAAATCCCTTGTGCTGTTCTCTGGGTTCAGTCTTGTGCCTGCTTAGCTGCTTATTACTA 539
Query 561 TTACCACCACAACCTAGTTGACTTCCCGACCAAAACAGAACCCGAGATCGATGTCCAAAT 620
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 540 TTACCACCACAACCTAGTTGACTTCCCGAGCAAAACAGAACCCGAGATCGATGTCCAAAT 599
Query 621 CTCTGGCATGCCTCTCTTGAAACATGACGAGATCCCTTCTTTCATTCACCCTTCAAGTCC 680
| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 600 CCCTGGCATGCCTCTCTTGAAACCCGACGAGACCCCTTCTTTCATTCACCCTTCAAGTCC 659
Query 681 TCACTCCGCTTTGCGAGAAGTGATCATAGATCAGATTAAACGGCTTCACAAGACTTTCTC 740
| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 660 TTATTCCGCTTTGCGAGAAGTGATCATAGATCAGATCAAACGGCTTCACAAGACTTTCTC 719
Query 741 CATTTTCATCGACACTTTCAACTCATTGGAGAAAGACATCATTGACCACATGTCGACGCT 800
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||
Sbjct 720 TATTTTCATCGACACTTTCAACTCCTTGGAGAAAGAAATCATCGACCACATGTCAACTCT 779
Query 801 CTCTCTCCCCGGTGTTATCAGACCGCTAGGACCACTCTACAAAATGGCTAAAACCGTAGC 860
|||||||||||| |||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 780 CTCTCTCCCCGGCGTTATCAGACCGCTCGGACCGCTTTACAAAATGGCTAAAACCGTAGC 839
Query 861 TTATGATGTCGTTAAAGTAAACATCTCTGAGCCAACGGATCCTTGCATGGAGTGGTTAGA 920
|||||||| || |||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 840 TTATGATGACGGCAAAGGAAACATCTCTGAGCCAACGGATCCTTGCATGGAATGGTTAGA 899
Query 921 CTCGCAGCCAGTTTCCTCCGTTGTTTACATCTCATTCGGGACCGTTGCTTACTTGAAACA 980
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 900 CTCGCAGCCTGTTTCCTCCGTTGTATACATCTCATTCGGGACCGTTGCTTACTTGAAACA 959
Query 981 AGAACAAATAGACGAGATCGCTTACGGTGTGTTAAACGCCGACGTTACGTTCTTGTGGGT 1040
|||||| ||||| |||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 960 AGAACAGATAGATGAGATCGCGTACGGTGTGTTAAACGCGGACGTTACGTTCTTATGGGT 1019
Query 1041 GATTAGACAACAAGAGTTAGGTTTCAACAAAGAGA-AACATGTTTTGCCGGAAGAAGTTA 1099
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
Sbjct 1020 GATTAGACAACAAGAGTTAGGTTTCAACAAAGA-ACGACATGTTTTGCCGGAAGAAGTAA 1078
Query 1100 AAGGGAAAGGGAAGATCGTTGAATGGTGTTCACAAGAGAAAGTATTATCTCATCCTTCAG 1159
|| |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 1079 AATGGAAAGGGAAGATCGTTGAATGGTGTTCACAAGAGAAAGTTTTGTCTCATCCTTCGG 1138
Query 1160 TGGCATGTTTCGTGACTCACTGTGGATGGAACTCAACGATGGAAGCTGTGTCTTCCGGAG 1219
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TGGCATGTTTCGTGACTCATTGTGGATGGAACTCAACGATGGAAGCTGTGTCTTCCGGAG 1198
Query 1220 TCCCGACGGTTTGTTTTCCTCAATGGGGAGATCAAGTCACGGACGCCGTTTACATGATCG 1279
|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1199 TCCCGACGGTTTGTTTCCCTCAGTGGGGAGATCAAGTCACGGACGCAGTTTACATGATCG 1258
Query 1280 ATGTTTGGAAGACGGGAGTGAGGCTAAGCCGTggagaggcggaggagaggttagtgccga 1339
||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||
Sbjct 1259 ATGTTTGGAAGACGGGAGTGAGGCTTGGCCGTGGAGAGGCGGATGAGAGGTTGGTGCCGA 1318
Query 1340 gggaggaagttgcggagaggttgagagaggttactaaaggagagaAAGCGATCGAGTTGA 1399
|||||||||| ||||||||| |||||||||||||||||||||||||||| |||||| |||
Sbjct 1319 GGGAGGAAGTGGCGGAGAGGCTGAGAGAGGTTACTAAAGGAGAGAAAGCAATCGAGCTGA 1378
Query 1400 AAAAGAATGCTTTGAAGTGGAAGGAAGAGGCGGAGGCGGCGGTTGCTCGCGGTGGTTCGT 1459
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1379 AGAAGAATGCTTTGAAGTGGAAGGAAGAGGCGGAGGCGGCGGTTGCTCGCGGTGGATCGT 1438
Query 1460 CGGATAGGAATCTTGAAAAGTTTGTGGAGAAGTTGGGTGCCAAACCTGTGGGGAAAGTAC 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 CGGATAGGAATCTTGAAAAGTTTGTGGAGAAGTTGGGTGCCAAACCTGTGGGGAAAGTAC 1498
Query 1520 AAAACGGGAGTCATAATCATGTCTTGGCTGGATCAATCAAAAGCTTTTAAAAAGTCATTT 1579
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1499 AAAACGGGAGTCATAATCATGTTTTGGCTGGATCAATCAAAAGCTTTTAAAAATTCATCA 1558
Query 1580 AAGtttttttgttttttGCCTTTGGTTTCTGCAAATTCGTAATTGTGTTTGTATCCATCC 1639
||||||||| |||||||| ||||||||||||| ||| | ||||||||||||||| ||| |
Sbjct 1559 AAGTTTTTTGGTTTTTTGTCTTTGGTTTCTGCGAATCCTTAATTGTGTTTGTATGCATTC 1618
Query 1640 TCCCATTGTGTTCTTTGTTTTTCTGTTTACTAt-tttttttt--GGTATGGGTCTAGGGG 1696
|||||||| ||||||||||| | |||||||| | |||||||| ||||||||||||||||
Sbjct 1619 TCCCATTGCGTTCTTTGTTTCTGTGTTTACTTTCTTTTTTTTTTGGTATGGGTCTAGGGG 1678
Query 1697 AGAGTCAATGA-CCTTACT-GAAGAATGTCAGTCACGCATTAAA 1738
||||||||| | |||| || ||||||||||||||| ||||||||
Sbjct 1679 AGAGTCAAT-ATCCTT-CTTGAAGAATGTCAGTCAAGCATTAAA 1720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66505567770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5