BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G21570.1

Length=734
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930118 jgi|Araly1|930118|scaffold_302575.1                        555    2e-157


> Ahg930118 jgi|Araly1|930118|scaffold_302575.1
Length=451

 Score =  555 bits (300),  Expect = 2e-157
 Identities = 398/446 (89%), Gaps = 3/446 (1%)
 Strand=Plus/Plus

Query  158  tttgtt-tttATCTTTAGAGATGGGAACCGAAATTATCAGGCCTCAAAATTGTTTGGTTG  216
            ||| || ||| |||||| |||||||||| ||||||||| |||||||||||||||||||||
Sbjct  1    TTTATTGTTTCTCTTTAAAGATGGGAACTGAAATTATCCGGCCTCAAAATTGTTTGGTTG  60

Query  217  ACCGGATGAGAGATTCTCCGGCGACtttttttAACTCCCGGAGGAATCATTTTCACCGGA  276
            |||||||||||||||||||||| ||  ||||||||||||||| |||||||||||||||||
Sbjct  61   ACCGGATGAGAGATTCTCCGGCAACACTTTTTAACTCCCGGAAGAATCATTTTCACCGGA  120

Query  277  AACCGCCTCTCAAACCTGATCAAAGGAGAAGATTCGGTTCCGATGAGTTCAGAACGACGA  336
            |||| ||||||  |||||  |||||||||||||||||||| ||||| |||||||||| ||
Sbjct  121  AACCACCTCTCCGACCTGCCCAAAGGAGAAGATTCGGTTCTGATGAATTCAGAACGATGA  180

Query  337  CAAAGAACATTGTTAGGAGAAAAGGAGAGTCTTTTGACTCATTCTCAAACATCAAAGTTC  396
            | |||||| |||||||||||| |||||||||||| || ||||| ||||||||||||||||
Sbjct  181  CGAAGAACGTTGTTAGGAGAAGAGGAGAGTCTTTCGATTCATTTTCAAACATCAAAGTTC  240

Query  397  GTAAATATTCACCGGAGGTTTCTGCCGATGATATTTATGCCGGATCTTCGATATTCGCTG  456
            | || ||||||||||||||||||||||| ||||||||||| ||||| || || |||| ||
Sbjct  241  GGAAGTATTCACCGGAGGTTTCTGCCGACGATATTTATGCTGGATCATCCATTTTCGTTG  300

Query  457  TTTCCCCAGCGCCAAGCTCGTTACCTTTGCCGTC-TTTCTCGAAGAAGAAAGCGAAAAGC  515
            |||| || ||||| |||||||||||||||||||| ||| |||| |||||| |||||||| 
Sbjct  301  TTTCTCCGGCGCCGAGCTCGTTACCTTTGCCGTCGTTT-TCGAGGAAGAATGCGAAAAGT  359

Query  516  CAGGTTGTTGTCGTTTCCATTGATGACTCGGCCTCTCAAGATCTCCGGAGACTTCTCCGG  575
            ||| |||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||
Sbjct  360  CAGATTGTTGTCGTTTCCGTTGATGACTCGGCGTCTCAAGATCTCCGGCGACTTCTCCGG  419

Query  576  CTAAAGTTTTGAGACTATCAATTAAA  601
            ||| ||||||||||  || |||||||
Sbjct  420  CTAGAGTTTTGAGAGAATTAATTAAA  445



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27029148153


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5