BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21580.1 Length=1381 Score E Sequences producing significant alignments: (Bits) Value Ahg318898 jgi|Araly1|318898|fgenesh1_pm.C_scaffold_3001914 1803 0.0 > Ahg318898 jgi|Araly1|318898|fgenesh1_pm.C_scaffold_3001914 Length=1179 Score = 1803 bits (976), Expect = 0.0 Identities = 1117/1184 (94%), Gaps = 13/1184 (1%) Strand=Plus/Plus Query 166 ATGAATCACTCCAATCTTGCCAA-TCCAACAGTCTCCCTCACCGTAACCCTAATCCCCAA 224 |||||||| |||||||||| ||| |||| |||||||||||||||||||||||||||| Sbjct 1 ATGAATCAATCCAATCTTG-CAACACCAAGTCTCTCCCTCACCGTAACCCTAATCCCCAA 59 Query 225 ACACCCAATTCGTCATCTCACATCTCCAATTCCTAACCGGAA-C-----TTTACAAACCC 278 |||||||||||||||||||||| ||||||||| ||||||||| | ||| ||||||| Sbjct 60 ACACCCAATTCGTCATCTCACAGCTCCAATTCATAACCGGAACCGGAATTTTGCAAACCC 119 Query 279 TAAGCTTCTCTTCCCGCTCCGGCTTAATGAGACTCCTTCCTCCTCTCTCGCCGCGAAAAG 338 ||||||| |||||||||||||||||||||||||| | | ||||||||| |||||||||| Sbjct 120 TAAGCTTTTCTTCCCGCTCCGGCTTAATGAGACT-C--CGTCCTCTCTCACCGCGAAAAG 176 Query 339 GGTTTTCATTGTCAGAGCCACCGTCGACGGAGACGGTAAAACCGGTAATTGGGTGAACCG 398 ||||||| | || ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 177 GGTTTTCGTGGTTAGAGCCACCGTCGACGGAGACGGAAAAACCGGTAATTGGGTGAACCG 236 Query 399 GTTACCAATTCCAGGACTTGGAGCCGAAAACGTCTTCAGATTGATTTCAAGCGCCACCGG 458 |||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| || || Sbjct 237 GTTACCAATTCCAGGACTCGGAGCCGAAAATGTCTTTAGATTGATTTCAAGCGCGACGGG 296 Query 459 AAGTCCCATCGGACAATTCATATCGTCTCCTGTGACATTTCTCCACTCGGTGGATCCCAG 518 ||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||| || Sbjct 297 AAGTCCCATTGGACAATTCATATCGTCCCCTGTTACATTTCTCCATTCGGTGGATCCGAG 356 Query 519 AATCAAATTGGTATGGCTATTAACTCTAGTAGTTCTTCCAGCAAGAGCAAATCTAGTTGT 578 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 357 AATCAAATTGGTATGGCTATTAACTCTAGTAGTTCTTCCAGCAAGAGCAAATATAGTTGT 416 Query 579 GCGTTTAGGACTTGTTC-TATGCACAGCTCTTTTGTCAATCCTTGTTCTCCCAAGACAAG 637 |||||||||||||| || |||||||||||||||||||| | ||||| ||||| ||||||| Sbjct 417 GCGTTTAGGACTTG-TCGTATGCACAGCTCTTTTGTCAGTTCTTGTCCTCCCTAGACAAG 475 Query 638 TTTGGATAGATCAATTGGCGAGAGTGTCGCTTCTTTCGGGTATTCTCTTCATAACATTGG 697 | ||||| ||||||||||||||||||||||||||||| || |||||||||||||| |||| Sbjct 476 TATGGATGGATCAATTGGCGAGAGTGTCGCTTCTTTCCGGAATTCTCTTCATAACTTTGG 535 Query 698 GGCTAGGTTCAGATGGTGCACCTCCAATGCTTCAATCAAGAACACCACCATCTTCAATCA 757 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 536 GGCTAGGTTCAGATGGTGCACCTCCAATGCTTCAATCAAGAACCCCACCTTCTTCAATCA 595 Query 758 CAAGCTTGCCTAATCTTCCCATGTCTTTAAGCGGTTATTCGTACATGTTACTGAAGCTTG 817 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 596 CTAGCTTGCCTAATCTTCCCATGTCTTTGAGCGGTTATTCGTACATGTTACTGAAGCTTG 655 Query 818 GTCCTTTGCAATTCACAAGGAAAGGTTTGTCTGTTGGAAGCACAGCCGCATGCTTAACCT 877 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 656 GTCCTTTGCAATTCACAAGGAAAGGTTTGTCTGTTGGAAGTACAGCCGCATGCTTAACCT 715 Query 878 TTATTATCTTCCAAAGTGCTAGTATTTGCCTTGCAACAACAACACCAGAGCAACTTGCAC 937 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 716 TTATTATCTTCCAAAGTGCTAGTATTTGCCTTGCAACCACAACACCAGAGCAACTTGCAC 775 Query 938 TAGCTCTACGTTGGTTCTTGTTCCCATTGACATATATTGGTGTTCCAGTCAGTGAAATTA 997 ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 776 TAGCTCTACGTTGGTTCTTGTTCCCGTTGACATATATTGGTGTTCCAGTCGGTGAAATTA 835 Query 998 TCCTCACGCTACTGCTTTCACTGAGATTCATTAATTTGGTTTTCGATGAGGTCCGAAGTG 1057 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 836 TCCTCACGCTACTGCTTTCACTGAGATTCATTAATTTGGTTTTCGATGAGGTCCGAAGTG 895 Query 1058 TTTCACTGGGAATTGTATCGCGAAGAGTAAACTGGCAGCAGCTTACTGTTCTGGAGACAC 1117 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 896 TTTCACTCGGAATTGTATCCCGAAGAGTAAACTGGCAGCAGCTTACTGTTCTGGAGACAC 955 Query 1118 TTGATATTTTCGCGTCATTCATACGCCGCATCTTCAAGAATATATTTCGTCATGCCGAAC 1177 ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || | Sbjct 956 TTGATATTTTCGCGTCATTCATACGCCGCATTTTCAAGAATATATTTCGCCATGCGGAGC 1015 Query 1178 AAATATCACAGGCCATGATTGTTAGAGGCTTCAGAGGAGAGAGCAGTAGCCACAAGATCT 1237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 AAATATCACAGGCCATGATTGTTAGAGGCTTCAGAGGAGAGAGCAGTAGCCACAAGATCT 1075 Query 1238 ACTTCTTCTCTGGCTCTTCGAATAAGTTTGCAGATTTTGCATCAGTTTTGTGTTTAATCG 1297 |||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 1076 ACTTCTTCTCTGGCTCATCGAATAAGTTTGCAGATTTTGCGTCAGTATTGTGTTTAATCG 1135 Query 1298 GTGTAATCTCAACCGCACTCTTGTCTGAATACTTTCTTGTCTAA 1341 ||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 1136 GTGTAATATCAACCGCGCTCTTGTCTGAATACTTTCTTGTCTAA 1179 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51694675452 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5