BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21580.1
Length=1381
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318898 jgi|Araly1|318898|fgenesh1_pm.C_scaffold_3001914 1803 0.0
> Ahg318898 jgi|Araly1|318898|fgenesh1_pm.C_scaffold_3001914
Length=1179
Score = 1803 bits (976), Expect = 0.0
Identities = 1117/1184 (94%), Gaps = 13/1184 (1%)
Strand=Plus/Plus
Query 166 ATGAATCACTCCAATCTTGCCAA-TCCAACAGTCTCCCTCACCGTAACCCTAATCCCCAA 224
|||||||| |||||||||| ||| |||| ||||||||||||||||||||||||||||
Sbjct 1 ATGAATCAATCCAATCTTG-CAACACCAAGTCTCTCCCTCACCGTAACCCTAATCCCCAA 59
Query 225 ACACCCAATTCGTCATCTCACATCTCCAATTCCTAACCGGAA-C-----TTTACAAACCC 278
|||||||||||||||||||||| ||||||||| ||||||||| | ||| |||||||
Sbjct 60 ACACCCAATTCGTCATCTCACAGCTCCAATTCATAACCGGAACCGGAATTTTGCAAACCC 119
Query 279 TAAGCTTCTCTTCCCGCTCCGGCTTAATGAGACTCCTTCCTCCTCTCTCGCCGCGAAAAG 338
||||||| |||||||||||||||||||||||||| | | ||||||||| ||||||||||
Sbjct 120 TAAGCTTTTCTTCCCGCTCCGGCTTAATGAGACT-C--CGTCCTCTCTCACCGCGAAAAG 176
Query 339 GGTTTTCATTGTCAGAGCCACCGTCGACGGAGACGGTAAAACCGGTAATTGGGTGAACCG 398
||||||| | || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 177 GGTTTTCGTGGTTAGAGCCACCGTCGACGGAGACGGAAAAACCGGTAATTGGGTGAACCG 236
Query 399 GTTACCAATTCCAGGACTTGGAGCCGAAAACGTCTTCAGATTGATTTCAAGCGCCACCGG 458
|||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| || ||
Sbjct 237 GTTACCAATTCCAGGACTCGGAGCCGAAAATGTCTTTAGATTGATTTCAAGCGCGACGGG 296
Query 459 AAGTCCCATCGGACAATTCATATCGTCTCCTGTGACATTTCTCCACTCGGTGGATCCCAG 518
||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||| ||
Sbjct 297 AAGTCCCATTGGACAATTCATATCGTCCCCTGTTACATTTCTCCATTCGGTGGATCCGAG 356
Query 519 AATCAAATTGGTATGGCTATTAACTCTAGTAGTTCTTCCAGCAAGAGCAAATCTAGTTGT 578
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 357 AATCAAATTGGTATGGCTATTAACTCTAGTAGTTCTTCCAGCAAGAGCAAATATAGTTGT 416
Query 579 GCGTTTAGGACTTGTTC-TATGCACAGCTCTTTTGTCAATCCTTGTTCTCCCAAGACAAG 637
|||||||||||||| || |||||||||||||||||||| | ||||| ||||| |||||||
Sbjct 417 GCGTTTAGGACTTG-TCGTATGCACAGCTCTTTTGTCAGTTCTTGTCCTCCCTAGACAAG 475
Query 638 TTTGGATAGATCAATTGGCGAGAGTGTCGCTTCTTTCGGGTATTCTCTTCATAACATTGG 697
| ||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct 476 TATGGATGGATCAATTGGCGAGAGTGTCGCTTCTTTCCGGAATTCTCTTCATAACTTTGG 535
Query 698 GGCTAGGTTCAGATGGTGCACCTCCAATGCTTCAATCAAGAACACCACCATCTTCAATCA 757
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 536 GGCTAGGTTCAGATGGTGCACCTCCAATGCTTCAATCAAGAACCCCACCTTCTTCAATCA 595
Query 758 CAAGCTTGCCTAATCTTCCCATGTCTTTAAGCGGTTATTCGTACATGTTACTGAAGCTTG 817
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 596 CTAGCTTGCCTAATCTTCCCATGTCTTTGAGCGGTTATTCGTACATGTTACTGAAGCTTG 655
Query 818 GTCCTTTGCAATTCACAAGGAAAGGTTTGTCTGTTGGAAGCACAGCCGCATGCTTAACCT 877
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 656 GTCCTTTGCAATTCACAAGGAAAGGTTTGTCTGTTGGAAGTACAGCCGCATGCTTAACCT 715
Query 878 TTATTATCTTCCAAAGTGCTAGTATTTGCCTTGCAACAACAACACCAGAGCAACTTGCAC 937
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 716 TTATTATCTTCCAAAGTGCTAGTATTTGCCTTGCAACCACAACACCAGAGCAACTTGCAC 775
Query 938 TAGCTCTACGTTGGTTCTTGTTCCCATTGACATATATTGGTGTTCCAGTCAGTGAAATTA 997
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 776 TAGCTCTACGTTGGTTCTTGTTCCCGTTGACATATATTGGTGTTCCAGTCGGTGAAATTA 835
Query 998 TCCTCACGCTACTGCTTTCACTGAGATTCATTAATTTGGTTTTCGATGAGGTCCGAAGTG 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TCCTCACGCTACTGCTTTCACTGAGATTCATTAATTTGGTTTTCGATGAGGTCCGAAGTG 895
Query 1058 TTTCACTGGGAATTGTATCGCGAAGAGTAAACTGGCAGCAGCTTACTGTTCTGGAGACAC 1117
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TTTCACTCGGAATTGTATCCCGAAGAGTAAACTGGCAGCAGCTTACTGTTCTGGAGACAC 955
Query 1118 TTGATATTTTCGCGTCATTCATACGCCGCATCTTCAAGAATATATTTCGTCATGCCGAAC 1177
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || |
Sbjct 956 TTGATATTTTCGCGTCATTCATACGCCGCATTTTCAAGAATATATTTCGCCATGCGGAGC 1015
Query 1178 AAATATCACAGGCCATGATTGTTAGAGGCTTCAGAGGAGAGAGCAGTAGCCACAAGATCT 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AAATATCACAGGCCATGATTGTTAGAGGCTTCAGAGGAGAGAGCAGTAGCCACAAGATCT 1075
Query 1238 ACTTCTTCTCTGGCTCTTCGAATAAGTTTGCAGATTTTGCATCAGTTTTGTGTTTAATCG 1297
|||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1076 ACTTCTTCTCTGGCTCATCGAATAAGTTTGCAGATTTTGCGTCAGTATTGTGTTTAATCG 1135
Query 1298 GTGTAATCTCAACCGCACTCTTGTCTGAATACTTTCTTGTCTAA 1341
||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1136 GTGTAATATCAACCGCGCTCTTGTCTGAATACTTTCTTGTCTAA 1179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51694675452
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5