BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21590.1
Length=682
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318899 jgi|Araly1|318899|fgenesh1_pm.C_scaffold_3001915 556 5e-158
> Ahg318899 jgi|Araly1|318899|fgenesh1_pm.C_scaffold_3001915
Length=726
Score = 556 bits (301), Expect = 5e-158
Identities = 424/479 (89%), Gaps = 25/479 (5%)
Strand=Plus/Plus
Query 204 AGCCAAGGCCATCGCGGTAGGAACAGGGCATATCATCAAGGGAATCTTCACTTGTAGCAA 263
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 AGCCAAGGCCATCGCCGAAGGAACAGGGCATATCATCAAGGGAATCTTCACTTGTAGCAA 332
Query 264 TTCTTACTCTAAGAAGATTCACGAGGAAGGAACGATTGCTGAAGAGGATGAGGAAAGAAG 323
|||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||
Sbjct 333 TTCTTACTCTAAGAAGATTCGCAAGGGAGGAACGATTGCTGAAGAGGTTGAGGAAAGAAG 392
Query 324 TGGTGACATATCACAAATTGATGGAGGTGGCAACAATGAAACTAATAAGAAGAATAAACT 383
||||||||||||| |||||| |||||||| ||||||||||||||| ||| |||||||||
Sbjct 393 TGGTGACATATCAGAAATTGGTGGAGGTGACAACAATGAAACTAAGAAGGAGAATAAACA 452
Query 384 CAACAAAAATCTTCAAAGAGCGGAGAAGCTGTGGAAGGTGAGCGAGGCTATAGGAATGGC 443
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 453 CAACAAAAATCTTCAAAGAGCGGAGAAGTTGTGGAAGGTGAGCGAGGCTATAGGAATGGC 512
Query 444 GGCCTTAGAAGGTGGAGATTTGGTGAGCAGTTCGATGATAGCTCCGGTGGTTAAGTCGAA 503
|| | ||||||||| |||| |||||||| ||| |||| |||||||||||||||| ||||
Sbjct 513 GGTCATAGAAGGTGAAGATATGGTGAGCGGTTGGATGGTAGCTCCGGTGGTTAAATCGAG 572
Query 504 GTTAGGGAAGGCATTGTTATCCACTGCTCCAGGAGAGGTTATCTTGGCATCACTTGATTC 563
|||||| |||||||||||||||||||||||||||||| |||||||||||| | | |
Sbjct 573 GTTAGGAAAGGCATTGTTATCCACTGCTCCAGGAGAGCTTATCTTGGCAT--C---A--C 625
Query 564 TTTTCATAAACACTTTGATGTGGTCAATAGATAATATAATTGGTGCTGCTGAAGCGGCAG 623
|| || | | | | || ||||||||||||||||||||||||||||||
Sbjct 626 --TTGAT------TCT--T-T--TC-----ATAATATAATTGGTGCTGCTGAAGCGGCAG 667
Query 624 AAATACAAACTCATTATGCCACATCCATGGCTGCTACTAGACTTGTGAGTAAGAGGTAA 682
| ||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 668 AGATACAAACTCATTCTGCCACATCCATGGCTGTTACTCGACTTGTGAGTAAGAGGTAA 726
Score = 268 bits (145), Expect = 3e-71
Identities = 185/205 (90%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 1 ATGTCCACATCAACCCAAGAAAACCAATCTGCCCAAGCGGTGAACGAAGAAGTTTTGTTG 60
|||||| || |||||||| ||||||||||| ||||| ||||||||| ||||| ||||||
Sbjct 1 ATGTCCTCACCAACCCAACAAAACCAATCTCCCCAAAAGGTGAACGAGGAAGTCTTGTTG 60
Query 61 GAGAATCCCGATTACGGAGTCCAAATCGTCGATAAATCCGAACTGTTGGAGCTAGCCTTG 120
||||||||| || || ||||||| ||||||||||| |||||| ||||||||||||||||
Sbjct 61 GAGAATCCCAATGACAGAGTCCATCTCGTCGATAAACCCGAACCGTTGGAGCTAGCCTTG 120
Query 121 AGTTTCTTAGGGGAAGACGGAGAAATCATGGAAAACCCTGAGTTTCTTGGAGATATCATG 180
||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 121 AGTTTCTTAGGGGGAGACGGAGAAATCATGGAAAACCCTGAGTTTCTAGGAGATTTCATG 180
Query 181 GGGGAGAAATCTTCAAGTACTTCAG 205
||||||||||||||||| ||||||
Sbjct 181 TGGGAGAAATCTTCAAGTGCTTCAG 205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25046756469
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5