BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21600.1 Length=1396 Score E Sequences producing significant alignments: (Bits) Value Ahg318900 jgi|Araly1|318900|fgenesh1_pm.C_scaffold_3001916 1729 0.0 > Ahg318900 jgi|Araly1|318900|fgenesh1_pm.C_scaffold_3001916 Length=1125 Score = 1729 bits (936), Expect = 0.0 Identities = 1063/1126 (94%), Gaps = 2/1126 (0%) Strand=Plus/Plus Query 44 ATGGGATGTTTCGGACCATCAAAGGCTTCAAGAACAAGAAACAATGAACATGACAA-GAT 102 |||||||||||||||||||||||| ||||||||||||||||| ||||| | || || ||| Sbjct 1 ATGGGATGTTTCGGACCATCAAAGACTTCAAGAACAAGAAACCATGAAAAAGA-AACGAT 59 Query 103 AACACGACAAAACCCCTCTCATCAACCTCAAACCATGAGAGCTGAAGAAGTTCTGTTGCA 162 |||||||||||||| |||| ||||||||||||||||||| | ||||||| ||||||||| Sbjct 60 GACACGACAAAACCCATCTCCTCAACCTCAAACCATGAGAACCGAAGAAGCTCTGTTGCA 119 Query 163 GATTCCTAGATGTAGAGTCCATCTCATAGGCGAATCCGAGGCGGTGGAGCTTGCCTCTGG 222 ||||||||||||||||||||||||||||| ||||||||| || ||||||||||| || || Sbjct 120 GATTCCTAGATGTAGAGTCCATCTCATAGACGAATCCGAAGCCGTGGAGCTTGCTTCCGG 179 Query 223 TGATTTCAAGCTCGTTAAGGTCTCAGACAACGGTGTAACTCTAGCTATGATCGTGAGAAT 282 |||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||||| Sbjct 180 TGATTTCAAGCTCGTTAAGGTCTCCGACAACGGTGTGACTCTAGCTATGATTGTAAGAAT 239 Query 283 CGGACATGACCTTCAGTGGCCAGTGATTAGAGATGAGCCAGTGGTAAAACTTGACGCCCG 342 ||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| || Sbjct 240 CGGACATGACCTTCAGTGGCCAGTGATTAGAGACGAGCCAGTGGTGAAACTCGACGCACG 299 Query 343 TGATTACCTCTTCACTCTCCCGGTTAAAGACGGTGATCCACTTAGCTACGGGGTCACTTT 402 ||| ||||||||||| || |||||||||||||||||||||||||||||||| |||||||| Sbjct 300 TGACTACCTCTTCACACTTCCGGTTAAAGACGGTGATCCACTTAGCTACGGTGTCACTTT 359 Query 403 CTCTGGCGATGACAGAGACGTAGCCCTCGTGAACAGTCTGAAGTTGCTTGACCAATTCTT 462 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 CTCCGGCGATGACAGAGACGTAGCCCTCGTGAACAGTCTGAAGTTGCTTGACCAATTCTT 419 Query 463 GAGTGAGAATTCTTGTTTCTCGTCTACGGCTTCGAGTAAGGTTAACAATGGAATCGACTG 522 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GAGTGAGAATTCTTGTTTCTCGTCTACGGCTTCGAGTAAGGTTAACAATGGAATCGACTG 479 Query 523 GCAAGAGTTTGCGCCGAGGATTGAAGATTACAACAACGTTGTTGCTAAGGCTATTGCTGG 582 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 480 GCAAGAGTTTGCGCCGAGGATTGAAGACTATAACAACGTTGTTGCTAAGGCTATTGCTGG 539 Query 583 AGGAACAGGACATATCATTAGAGGAATCTTTAGTCTCAGTAATGCTTACTCTAACCAGGT 642 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 AGGAACAGGACATATCATTAGAGGAATCTTTAGTCTCAGTAATGCTTACTCTAACCAGGT 599 Query 643 TCACAAGGGAGGCGACATAATGATTACAAAGGCTGAGGAGAGCCAGAGAAATGGAAGTTA 702 |||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| |||| Sbjct 600 TCACAAGGGAGGTGACATAATGATTACAAAGGCTGAAGAGAGTCAGAGAAATGGAGGTTA 659 Query 703 CAACAATGGAAACTCCAGTGGTAATGAGAAGAAAAATGGGATCAACACACACCTTCAACG 762 ||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 660 CAATAATGGAAACTCCAGTGGTAATGAGAAGAAAAATGGAATCAACACAAACCTTCAACG 719 Query 763 AGTGAGGAAGCTGTCAAAGGCGACTGAGAATCTGAGCAAGACGATGTTGAATGGTGCGGG 822 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 AGTGAGGAAGCTGTCAAAGGCGACTGAGAATCTGAGCAAGACGATGTTGAATGGTGCGGG 779 Query 823 AGTTGTGAGCGGCTCTGTGATGGTCCCTATGATGAAGTCGAAACCAGGGATGGCCTTCTT 882 ||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 780 AGTTGTGAGTGGCTCTGTGATGGTCCCTGTGATGAAGTCGAAACCGGGGATGGCCTTCTT 839 Query 883 TTCGATGGTTCCAGGGGAGGTCCTCTTAGCTTCACTTGATGCCCTTAATAAAATACTAGA 942 || |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| Sbjct 840 CTCCATGGTTCCAGGGGAAGTCCTCTTGGCTTCACTTGACGCCCTTAATAAAATACTAGA 899 Query 943 TGCAACTGAAGCTGCAGAGAGACAAACTCTATCTGCAACATCCAGGGCTGCTACCAGAAT 1002 |||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 900 TGCAACTGAAGCCGCGGAGAGACAAACTCTATCTGCTACATCCAGGGCTGCTACCAGAAT 959 Query 1003 GGTCAGTGAGAGGTTTGGAGATAACGCAGGGGAGGCCACCGGAGATGTTCTAGCAACAGC 1062 ||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||| Sbjct 960 GGTCAGTGAGAGGTTTGGAGAGAACGCAGGGGAGGCTACGGGAGACGTTCTAGCAACAGC 1019 Query 1063 GGGCCACGCAGCTGGAACTGCCTGGAATGTTCTCAAGATCCGTAAGACTTTCTATCCTTC 1122 |||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 1020 TGGCCACGCGGCTGGAACTGCCTGGAATGTTCTCAAGATCCGCAAGACTTTTTATCCTTC 1079 Query 1123 ATCTTCTCTTACATCAGGAATCGTCAAAAATGCTCCAAGAAAGTGA 1168 ||||||||| ||||| || ||||||||||||| |||||||||||| Sbjct 1080 ATCTTCTCTCACATCCGGGGTCGTCAAAAATGCCCCAAGAAAGTGA 1125 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52183635650 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5