BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21600.1
Length=1396
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318900 jgi|Araly1|318900|fgenesh1_pm.C_scaffold_3001916 1729 0.0
> Ahg318900 jgi|Araly1|318900|fgenesh1_pm.C_scaffold_3001916
Length=1125
Score = 1729 bits (936), Expect = 0.0
Identities = 1063/1126 (94%), Gaps = 2/1126 (0%)
Strand=Plus/Plus
Query 44 ATGGGATGTTTCGGACCATCAAAGGCTTCAAGAACAAGAAACAATGAACATGACAA-GAT 102
|||||||||||||||||||||||| ||||||||||||||||| ||||| | || || |||
Sbjct 1 ATGGGATGTTTCGGACCATCAAAGACTTCAAGAACAAGAAACCATGAAAAAGA-AACGAT 59
Query 103 AACACGACAAAACCCCTCTCATCAACCTCAAACCATGAGAGCTGAAGAAGTTCTGTTGCA 162
|||||||||||||| |||| ||||||||||||||||||| | ||||||| |||||||||
Sbjct 60 GACACGACAAAACCCATCTCCTCAACCTCAAACCATGAGAACCGAAGAAGCTCTGTTGCA 119
Query 163 GATTCCTAGATGTAGAGTCCATCTCATAGGCGAATCCGAGGCGGTGGAGCTTGCCTCTGG 222
||||||||||||||||||||||||||||| ||||||||| || ||||||||||| || ||
Sbjct 120 GATTCCTAGATGTAGAGTCCATCTCATAGACGAATCCGAAGCCGTGGAGCTTGCTTCCGG 179
Query 223 TGATTTCAAGCTCGTTAAGGTCTCAGACAACGGTGTAACTCTAGCTATGATCGTGAGAAT 282
|||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct 180 TGATTTCAAGCTCGTTAAGGTCTCCGACAACGGTGTGACTCTAGCTATGATTGTAAGAAT 239
Query 283 CGGACATGACCTTCAGTGGCCAGTGATTAGAGATGAGCCAGTGGTAAAACTTGACGCCCG 342
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||
Sbjct 240 CGGACATGACCTTCAGTGGCCAGTGATTAGAGACGAGCCAGTGGTGAAACTCGACGCACG 299
Query 343 TGATTACCTCTTCACTCTCCCGGTTAAAGACGGTGATCCACTTAGCTACGGGGTCACTTT 402
||| ||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 300 TGACTACCTCTTCACACTTCCGGTTAAAGACGGTGATCCACTTAGCTACGGTGTCACTTT 359
Query 403 CTCTGGCGATGACAGAGACGTAGCCCTCGTGAACAGTCTGAAGTTGCTTGACCAATTCTT 462
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTCCGGCGATGACAGAGACGTAGCCCTCGTGAACAGTCTGAAGTTGCTTGACCAATTCTT 419
Query 463 GAGTGAGAATTCTTGTTTCTCGTCTACGGCTTCGAGTAAGGTTAACAATGGAATCGACTG 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAGTGAGAATTCTTGTTTCTCGTCTACGGCTTCGAGTAAGGTTAACAATGGAATCGACTG 479
Query 523 GCAAGAGTTTGCGCCGAGGATTGAAGATTACAACAACGTTGTTGCTAAGGCTATTGCTGG 582
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 480 GCAAGAGTTTGCGCCGAGGATTGAAGACTATAACAACGTTGTTGCTAAGGCTATTGCTGG 539
Query 583 AGGAACAGGACATATCATTAGAGGAATCTTTAGTCTCAGTAATGCTTACTCTAACCAGGT 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGGAACAGGACATATCATTAGAGGAATCTTTAGTCTCAGTAATGCTTACTCTAACCAGGT 599
Query 643 TCACAAGGGAGGCGACATAATGATTACAAAGGCTGAGGAGAGCCAGAGAAATGGAAGTTA 702
|||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct 600 TCACAAGGGAGGTGACATAATGATTACAAAGGCTGAAGAGAGTCAGAGAAATGGAGGTTA 659
Query 703 CAACAATGGAAACTCCAGTGGTAATGAGAAGAAAAATGGGATCAACACACACCTTCAACG 762
||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 660 CAATAATGGAAACTCCAGTGGTAATGAGAAGAAAAATGGAATCAACACAAACCTTCAACG 719
Query 763 AGTGAGGAAGCTGTCAAAGGCGACTGAGAATCTGAGCAAGACGATGTTGAATGGTGCGGG 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGTGAGGAAGCTGTCAAAGGCGACTGAGAATCTGAGCAAGACGATGTTGAATGGTGCGGG 779
Query 823 AGTTGTGAGCGGCTCTGTGATGGTCCCTATGATGAAGTCGAAACCAGGGATGGCCTTCTT 882
||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 780 AGTTGTGAGTGGCTCTGTGATGGTCCCTGTGATGAAGTCGAAACCGGGGATGGCCTTCTT 839
Query 883 TTCGATGGTTCCAGGGGAGGTCCTCTTAGCTTCACTTGATGCCCTTAATAAAATACTAGA 942
|| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 840 CTCCATGGTTCCAGGGGAAGTCCTCTTGGCTTCACTTGACGCCCTTAATAAAATACTAGA 899
Query 943 TGCAACTGAAGCTGCAGAGAGACAAACTCTATCTGCAACATCCAGGGCTGCTACCAGAAT 1002
|||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 TGCAACTGAAGCCGCGGAGAGACAAACTCTATCTGCTACATCCAGGGCTGCTACCAGAAT 959
Query 1003 GGTCAGTGAGAGGTTTGGAGATAACGCAGGGGAGGCCACCGGAGATGTTCTAGCAACAGC 1062
||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||
Sbjct 960 GGTCAGTGAGAGGTTTGGAGAGAACGCAGGGGAGGCTACGGGAGACGTTCTAGCAACAGC 1019
Query 1063 GGGCCACGCAGCTGGAACTGCCTGGAATGTTCTCAAGATCCGTAAGACTTTCTATCCTTC 1122
|||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1020 TGGCCACGCGGCTGGAACTGCCTGGAATGTTCTCAAGATCCGCAAGACTTTTTATCCTTC 1079
Query 1123 ATCTTCTCTTACATCAGGAATCGTCAAAAATGCTCCAAGAAAGTGA 1168
||||||||| ||||| || ||||||||||||| ||||||||||||
Sbjct 1080 ATCTTCTCTCACATCCGGGGTCGTCAAAAATGCCCCAAGAAAGTGA 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52183635650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5