BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21610.1
Length=869
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930123 jgi|Araly1|930123|scaffold_302580.1 893 0.0
> Ahg930123 jgi|Araly1|930123|scaffold_302580.1
Length=565
Score = 893 bits (483), Expect = 0.0
Identities = 543/571 (95%), Gaps = 8/571 (1%)
Strand=Plus/Plus
Query 90 TTTCGCGGTTGTATATCGCC-TATGGACGAGGTGATGACAGCGGCGGACGTTGGTTCGTT 148
||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1 TTTCGCGGTTG--TATCGCCGAATGGACGAGGTGATGACAGCGGCGGACGCCGGTTCGTT 58
Query 149 AGGTGGCGGCAATAGGGCGTTGTACGGATCTCCTCCGTCGCATAATCTGTTTCCTCACAA 208
||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 59 AGGTGGCGGAAACAGGGCGTTGTACGGATCTCCTCCGTCGCAGAATCTGTTTCCTCACAA 118
Query 209 TCTCCCAATCTTCTCCGCTTTTCTTGCCTTCGCTCTTGCTCAGTTCCTCAAAGTCTTCAC 268
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 119 TCTCCCAATCTTCTCCGCTTTTCTTGCCTTCGCTCTTGCTCAGTTCCTCAAAGTTTTCAC 178
Query 269 TAATTGGTACAAAGAAAAGAGGTGGGACTCTAAACGTATGATTAGTTCTGGTGGAATGCC 328
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 179 TAATTGGTACAAAGAAAAGAGGTGGGACTCTAAACGTATGATTAGCTCTGGTGGAATGCC 238
Query 329 TTCTTCTCATTCTGCTACTGTCACTGCCTTAGCTGTTGCCATTGGCTTTGAAGAAGGAGC 388
|||||| ||||| ||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 239 TTCTTCGCATTCCGCTACCGTCACTGCCTTAGCTGTTGCCATTGGCCTTGAAGAAGGAGC 298
Query 389 TGGAGCACCAGCTTTTGCTATTGCAGTTGTCTTGGCTTGCGTTGTTATGTATGATGCCTC 448
|||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 299 AGGAGCACCAGCTTTCGCTATCGCAGTTGTCTTAGCTTGCGTTGTTATGTATGATGCCTC 358
Query 449 TGGTGTCAGGCTTCATGCTGGTCGTCAAGCCGAGCTGCTGAATCAAATTGTTTGTGAGTT 508
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CGGTGTCAGGCTTCATGCTGGTCGTCAAGCCGAGCTGCTGAATCAAATTGTTTGTGAGTT 418
Query 509 TCCTCCGGAGCATCCATTATCAACAGTTAGACCATTGCGTGAACTGCTTGGCCACACTCC 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TCCTCCGGAGCATCCATTATCAACAGTTAGACCATTGCGTGAACTGCTTGGCCACACTCC 478
Query 569 TATCCAGGTTGCAGCAGGTGGGATTTTAGGATGCGTGGTAGCTTACTTAATGAGGAGCTC 628
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
Sbjct 479 TATCCAGGTTGCAGCAGGTGGGATTTTAGGATGCATGGTAGCTTATTTAATGAGGAGCAC 538
Query 629 AAGCTAGTCAGTCTCTCTACACAA-GAACAA 658
||||||||| ||||| |||||| ||||||
Sbjct 539 AAGCTAGTC--TCTCT--ACACAAAGAACAA 565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32175741948
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5