BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21620.1
Length=2544
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342312 jgi|Araly1|342312|fgenesh1_pg.C_scaffold_3002075 3546 0.0
Ahg493346 jgi|Araly1|493346|fgenesh2_kg.7__2779__AT4G15430.1 1539 0.0
Ahg338150 jgi|Araly1|338150|fgenesh1_pg.C_scaffold_2000249 555 8e-157
> Ahg342312 jgi|Araly1|342312|fgenesh1_pg.C_scaffold_3002075
Length=2271
Score = 3546 bits (1920), Expect = 0.0
Identities = 2158/2275 (95%), Gaps = 8/2275 (0%)
Strand=Plus/Plus
Query 188 ATGGCGACACTAACCGATATCGGAGTCGCAGCAACGATCAATATTC-TAACCGCATTTGC 246
||||| ||||||| ||||||||||||||||||| ||||||||| || |||||||||| ||
Sbjct 1 ATGGCTACACTAAACGATATCGGAGTCGCAGCAGCGATCAATA-TCTTAACCGCATTCGC 59
Query 247 TTTCTTCATTGCCTTTGCGATACTTAGACTTCAACCAGTTAACGACAGAGTCTATTTCCC 306
||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 60 GTTCTTTATCGCCTTTGCGATTCTTAGACTTCAACCAGTTAACGACAGAGTCTATTTCCC 119
Query 307 TAAATGGTATCTCAAGGGTTTAAGAAGTAGTCCTATAAAAACAGGTGGCTTTGCTAGCAA 366
|||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 120 TAAATGGTATCTCAAGGGTTTAAGAAGTAGCCCTATTAAAACTGGTGGCTTTGCTAGCAA 179
Query 367 GTTTGTCAATTTGGATTTTCGATCTTACATCAGATTCTTGAATTGGATGCCTCAAGCTTT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTTTGTCAATTTGGATTTTCGATCTTACATCAGATTCTTGAATTGGATGCCTCAAGCTTT 239
Query 427 GAGAATGCCTGAGCCTGAACTTATTGATCATGCTGGTTTGGATTCTGTTGTCTATCTCAG 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAGAATGCCTGAGCCTGAACTTATTGATCATGCTGGTTTGGATTCTGTTGTCTATCTCAG 299
Query 487 GATTTACTTACTCGGGTTGAAGATCTTTTTTCCTATAGCATGTATTGCTTTCACTGTAAT 546
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 300 GATTTACTTACTTGGGTTGAAGATCTTTTTTCCTATAGCATGTATTGCTTTTACTGTAAT 359
Query 547 GGTACCGGTTAATTGGACTAACTCGACGTTGGATCAGTTAAAGAATCTAACTTTTAGTGA 606
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 360 GGTACCGGTTAATTGGACCAACTCGACGTTGGATCAGTTAAAGAATCTAACTTTCAGCGA 419
Query 607 TATTGATAAACTCTCTATATCGAATATACCAACTGGATCATCCAGGTTTTGGGTGCATTT 666
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TATCGATAAACTCTCTATATCGAATATACCAACTGGATCATCCAGGTTTTGGGTGCATTT 479
Query 667 GTGTATGGCTTATGTTATTACCTTTTGGACTTGCTTTGTCCTACAACGAGAGTACAAGCA 726
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |
Sbjct 480 GTGTATGGCTTATGTTATTACCTTCTGGACATGCTTTGTTTTACAACGAGAGTACAAGAA 539
Query 727 TATTGCTTCCATGAGGCTACAGTTTCTTGCTTCTGAGCATAGGAGACCTGACCAGTTTAC 786
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 TATTGGTTCCATGAGGCTACAGTTTCTTGCTTCTGAGCAAAGGAGACCTGACCAGTTTAC 599
Query 787 TGTTCTTGTAAGGAACATTCCTCCAGATCCTGATGAATCAGTAAGTGAGCTCGTTGAGCA 846
|||||||| ||||||||||||||||||||||||||||| || ||||| || ||||||||
Sbjct 600 AGTTCTTGTGAGGAACATTCCTCCAGATCCTGATGAATCCGTTAGTGAACTTGTTGAGCA 659
Query 847 TTTCTTTAAGGTCAACCATCCAGACTACTACCTCACTTACCAGGCGGTCTACAACGCAAA 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTTCTTTAAGGTCAACCATCCAGACTACTACCTCACTTACCAGGCGGTCTACAACGCAAA 719
Query 907 CAAGCTGTCGGAACTGGTACAGAAGAGGATGAAATTGCAGAATTGGCTTGATTACTATCA 966
||| ||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 720 CAAACTGTCTGAATTGGTTCAGAAGAGGAAAAAATTGCAGAATTGGCTTGATTACTATCA 779
Query 967 AAACAAACACTCTAGGAATCC-ATCTAAAAGGCCTTTAATAAAGATTGGTTTCCTTGGCT 1025
||||||||||||||||||||| | |||||||||||||||||||||| ||||| || ||||
Sbjct 780 AAACAAACACTCTAGGAATCCGA-CTAAAAGGCCTTTAATAAAGATAGGTTTTCTCGGCT 838
Query 1026 GTTGGGGTGAAGAAGTTGATGCAATTGATCACTACATAGAAAAAATCGAGGGTCTAACGA 1085
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 839 GTTGGGGTGAAGAAGTTGATGCAATCGATCACTACATAGAAAAAATCGAGGGTCTAACGA 898
Query 1086 GAAAAATAAGTGAAGAGAAAGAGACAGTAATGAGCAGCACAAAATCACTCGTACCTGCAG 1145
||||||||||||||||||| ||||| || ||||||||||||||||| || || |||||||
Sbjct 899 GAAAAATAAGTGAAGAGAAGGAGACTGTGATGAGCAGCACAAAATCGCTTGTGCCTGCAG 958
Query 1146 CTTTTGTATCCTTCAAAAAGCGTTGGGGCGCTGTTGTTTGCTCTCAAACTCAACAGTCTC 1205
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 959 CTTTTGTATCCTTCAAAAGGCGTTGGGGCGCAGTTGTTTGCTCTCAAACTCAACAGTCAA 1018
Query 1206 GAAACCCGACAGAGTGGCTAACCGAGTGGGCTCCAGAGCCGCGAGACATATACTGGGACA 1265
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1019 GAAACCCGACAGAGTGGCTAACCGAGTGGGCTCCAGAGCCCCGAGACATATACTGGGACA 1078
Query 1266 ATCTAGCATTACCATATGTTCAGCTCACAATCCGGAGACTAGTAATAGCTGTAGCTTTCT 1325
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 1079 ATCTAGCATTACCATATGTTCAACTCACAATCCGAAGACTAGTAATAGCTGTGGCTTTCT 1138
Query 1326 TCTTCCTCACTTTCTTCTTCATGATCCCTATAGCTTTCGTACAGACACTCGCCAATATCG 1385
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 1139 TCTTCCTCACTTTCTTCTTCATGATCCCTATAGCTTTCGTGCAGACACTCGCCAACATTG 1198
Query 1386 AAGGCATCGAAAAGGCTGTTCCGTTCTTGAAACCGCTTATCGAAGTGAAAACTGTAAAGT 1445
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1199 AAGGCATCGAAAAGGCTGTTCCATTCTTGAAACCGCTTATCGAAGTGAAAACGGTAAAGT 1258
Query 1446 CATTTATCCAAGGTTTTCTTCCGGGTATCGCATTGAAGATATTCCTCATTGTCCTCCCAA 1505
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CATTCATCCAAGGTTTCCTTCCGGGTATCGCATTGAAGATATTCCTCATTGTCCTCCCAA 1318
Query 1506 GTATACTAATGCTAATGTCGAAGTTCGAAGGCTTCATAAGCAAATCTTCACTAGAAAGAA 1565
| ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1319 GCATACTTATGCTAATGTCGAAATTCGAAGGCTTCATAAGTAAATCTTCACTAGAAAGAA 1378
Query 1566 GGTGTGCAAGCAGATACTACATGTTCCAGTTCATCAACGTTTTCCTCTGTAGCATAATCG 1625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GGTGTGCAAGCAGATACTACATGTTCCAGTTCATCAACGTTTTCCTCTGTAGCATAATCG 1438
Query 1626 CGGGAACTGCGCTTCAACAACTTGACAGCTTCCTAAACCAATCTGCAACCGAAATACCGA 1685
|||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| || |
Sbjct 1439 CGGGGACTGCGCTTCAACAGCTTAACAGCTTCCTAAACCAATCTGCAACCGAAATCCCAA 1498
Query 1686 AGACAATTGGTGTCTCGATACCAATGAAAGCCACTTTCTTTATCACCTACATAATGGTAG 1745
||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 1499 AGACAATTGGTGTGTCGATACCAATGAAGGCCACTTTCTTTATAACCTACATAATGGTGG 1558
Query 1746 ACGGATGGGCTGGTGTTGCTGGAGAGATACTGAGGTT-AAAGCCATTGATAATATATCAT 1804
||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||
Sbjct 1559 ACGGATGGGCTGGTGTTGCTGGAGAGATACTGAGGTTGAAA-CCATTGATAATCTATCAT 1617
Query 1805 CTCAAGAACTTCTTCCTTGTGAAAACAGAGAAGGACAGAGAAGAAGCAATGGATCCTGGA 1864
|||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 1618 CTCAAGAACTTCTTCCTTGTGAAAACAGAGAAAGATAGAGAAGAGGCAATGGATCCTGGA 1677
Query 1865 ACCATAGGTTTCAATACTGGTGAACCTCAGATACAACTCTACTTCATTCTTGGTCTAGTT 1924
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1678 ACCATAGGATTCAATACTGGTGAACCACAGATACAACTCTACTTCATTCTCGGTCTAGTT 1737
Query 1925 TACGCCGCTGTTAGCCCCATTCTCCTTCCTTTTATCCTCGTCTTCTTCGCCTTAGCTTAC 1984
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1738 TACGCCGCTGTTAGCCCCATTCTCCTTCCATTTATCCTCGTCTTCTTCGCCTTAGCTTAT 1797
Query 1985 GTGGTTTACCGTCATCAGATTATAAATGTGTATAACCAAGAGTATGAGAGTGCTGCAGCG 2044
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1798 GTGGTTTACCGTCATCAGATTATAAATGTGTATAACCAAGAGTATGAGAGTGCTGCCGCG 1857
Query 2045 TTCTGGCCAGATGTTCATAGACGTGTAGTGATTGCACTGATCGTATCTCAGCTTCTTTTG 2104
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1858 TTCTGGCCTGATGTTCATAGACGTGTAGTGATTGCACTAATCGTATCTCAGCTTCTTTTG 1917
Query 2105 ATGGGATTGCTTAGCACGAAAAAAGCTGCTCGTTCGACTCCATTGCTTTTCATACTTCCT 2164
||||||||||| ||||||||| |||||||||||||||||||||||| |||||||| |||
Sbjct 1918 ATGGGATTGCTAAGCACGAAACGAGCTGCTCGTTCGACTCCATTGCTATTCATACTGCCT 1977
Query 2165 GTGTTAACCATTGGATTCCACAAATTCTGTCAAGGACGTTACCAACCTATATTTGTCACA 2224
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1978 GTGTTAACCATTGGATTCCACAAATTCTGTCAAGGACGTTACCAACCTATCTTTGTCAGA 2037
Query 2225 TACCCTTTACAGGATGCAATGGTTAAAGATACGTTGGAACGCATGAGAGAACCGAATTTA 2284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2038 TACCCTTTACAGGATGCAATGGTTAAAGATACGTTGGAACGCATGAGAGAACCGAATTTA 2097
Query 2285 AACTTGAAAACGTTTCTTCAAAACGCGTATGCACATCCGGTGTTTAAAGCTGCAGATAAT 2344
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 2098 AACTTGAAAACGTTTCTTCAAAACGCGTATGCACATCCGGTGTTTAAGGCTGCTGATAAT 2157
Query 2345 CTAGCTAATGAGATGGTTGTGGAGGAGCCAGCGCCCG-ATAAGACGCCGGATTTAGTGGC 2403
|| || |||||||||||||| || |||||| | ||| || ||||||||||||||||||
Sbjct 2158 CTGGCGAATGAGATGGTTGTAGAAGAGCCA-CATCCGGATCGGACGCCGGATTTAGTGGC 2216
Query 2404 GACTAAACGTGGCTCAAGGAGGTTTAATAGCGGCTCTGCTGAAACCTTTACTTAG 2458
||||||||||||||| || ||| | ||||||||||||||||||||||||| |||
Sbjct 2217 GACTAAACGTGGCTCGAGAAGGCTGCATAGCGGCTCTGCTGAAACCTTTACATAG 2271
> Ahg493346 jgi|Araly1|493346|fgenesh2_kg.7__2779__AT4G15430.1
Length=2511
Score = 1539 bits (833), Expect = 0.0
Identities = 1721/2139 (80%), Gaps = 103/2139 (5%)
Strand=Plus/Plus
Query 186 TCATGGCGACACTAACCGATATCGGAGTCGCAGCAACGATCAATATTCTAACCGCATTTG 245
||||||| ||| ||| |||||| ||||| |||||| | |||||||| | || ||||| |
Sbjct 72 TCATGGCTACAATAAACGATATTGGAGTAGCAGCAGCAATCAATATAGTCACAGCATTAG 131
Query 246 C-TTTCTTCATT-GCCTTTGCGATACTT-A-GACTTCAACCAGTTAACGACAGAGTCTAT 301
| |||| || || || ||||| ||| || | || |||||||||| || ||||||||||||
Sbjct 132 CTTTTC-TC-TTAGCTTTTGCTATA-TTCAGGA-TTCAACCAGTAAATGACAGAGTCTAT 187
Query 302 TTCCCTAAATGGTATCTCAAGGGTTTAAGAAGTAGTCCTATAAAAACAGGTGGCTTTGCT 361
||||||||||||||||||||||| |||||||||||| ||||| |||| |||||||||| |
Sbjct 188 TTCCCTAAATGGTATCTCAAGGGCTTAAGAAGTAGTTCTATACAAACTGGTGGCTTTGGT 247
Query 362 AGCAAGTTTGTCAATTTGGATTTTC-GATCTTACAT-CAGATTC-TTGAATTGGATGCCT 418
||||| || |||| ||||| || | |||| || || | | ||| || ||||||||||||
Sbjct 248 AGCAAATTCATCAACTTGGACTT-CAGATCCTATATTC-GTTTCCTT-AATTGGATGCCT 304
Query 419 CAAGCT-TTGAGAATGCCTGAGCCTGAACTTATTGATCATGCTGGTTTGGATTCTGTTGT 477
|||| || | |||||| || ||||| || | ||||| ||||| | |||||||||||
Sbjct 305 GAAGCACTTAA-AATGCCAGAACCTGAGCTCGTCGATCACGCTGGACTCGATTCTGTTGT 363
Query 478 CTATCTC-AGGATTTACTTACTCGGGTTGAAGATCTTTTTTCCTATAGCATGTATTGCTT 536
||| || ||||| |||||||||||| | ||||||||||| |||||||| ||| ||||||
Sbjct 364 CTA-CTTGAGGATCTACTTACTCGGGCTCAAGATCTTTTTCCCTATAGCTTGTGTTGCTT 422
Query 537 TCACTGTAATGGTACCGGTTAATTGGACTAACTCGACG-TTGGATCAGTTAAAGA-AT-C 593
| || | |||||| || ||||||||||| ||| | | ||||||| ||||| || || |
Sbjct 423 TTACGGCAATGGTTCCTGTTAATTGGACAAACAAGG-GATTGGATCGGTTAA-GACATTC 480
Query 594 TAAC-T---TTT-AGTGATATTGATAAACTCTCTATATCGAATATACCAACTGGATCATC 648
||| | ||| ||||||||||||||||||||| |||| |||||||||| ||| ||| |
Sbjct 481 TAATATAAGTTTCAGTGATATTGATAAACTCTCTTTATCAAATATACCAAATGGCTCA-C 539
Query 649 C-AGGTTTTGGGTGCATTTGTGTATGGCTTATGTTATTACCTTT-TGGACTTGCTTTGTC 706
| || |||||||||||||||||||||||||||| ||| || ||| ||||| |||||| ||
Sbjct 540 CTAGATTTTGGGTGCATTTGTGTATGGCTTATGCTATCAC-TTTCTGGACATGCTTTATC 598
Query 707 CT-ACAACGAGAGTACAAGCATATTGCTTCCATGAGGCTACAGTTTCTTGCTTCTGAGCA 765
|| | || |||||||| || |||| |||| ||||| |||||||||||||| ||| ||
Sbjct 599 CTGAAAA-GAGAGTACCAGAATATAGCTTTAATGAGACTACAGTTTCTTGCAAATGATCA 657
Query 766 TAGGAGACCTGACCAGTTTACTGTTCTTGTAAGGAACATTCCTCCAGATCCTGATGAATC 825
||||||||| ||||||| ||||| || ||||| ||||||||| |||||||| |||||||
Sbjct 658 AAGGAGACCTAACCAGTTCACTGTGCTGGTAAGAAACATTCCTTCAGATCCTCATGAATC 717
Query 826 AGTAAGTGAGCTCGTTGAGCATTTCTTTAAGGTCAACCATCCAGA-CTACTACCTCACTT 884
| || |||| || ||||| |||||||| || |||||||||||||| | ||||||||||||
Sbjct 718 AATATGTGAACTTGTTGAACATTTCTTCAAAGTCAACCATCCAGATC-ACTACCTCACTT 776
Query 885 ACCAGGCGGTCTACAACGCAA-ACAAGCTGTCGGAACTGGTACAGAAGAGGA-TGAAATT 942
|||||| ||| || | |||| | || || || ||| |||| | || ||||| | ||||
Sbjct 777 TCCAGGCAGTCCACGATGCAACAAAA-CTCTCCGAATTGGTTCTGACGAGGAATCAAAT- 834
Query 943 GCAGAAT-TGGCTTGATTACTATCA-AAACAAACAC-TCTAGGAATCCATCTAAAAGGCC 999
||||||| || ||||||||| || | |||||||||| | ||||||| |||||| |||||
Sbjct 835 GCAGAATCTG-CTTGATTACAAT-ATAAACAAACACATG-AGGAATCAATCTAACAGGCC 891
Query 1000 TTTAATAAAGATTGG-TTTCCTTGGCTGTTGGGGTGAAGAAGTTGATGCAATTGA-TCAC 1057
|||||||||| || |||| ||||||| || |||||||||| ||||| ||| | | |
Sbjct 892 AGTAATAAAGATGGGATTTC-TTGGCTGCTGTGGTGAAGAAGCTGATGGAATCAAAT-AT 949
Query 1058 TACATAGAAAAAA-TCGAGGGTCTAACGAGAAAAATAAG-TGAAGAGAAAGAGACAGT-A 1114
|||| | ||||||||||||| ||| ||||| | ||| || ||| ||| || |
Sbjct 950 TACAC-GTCCGTCGTCGAGGGTCTAACAAGAGAAATA-GCTGAGGAAAAACAGAG-GTTA 1006
Query 1115 ATGAGCAGCACAAAATC-ACTCGTACCTGCAGCTTTTGTATCCTTCAAAAAGC-GTTGGG 1172
| || | ||||||| || | | || ||||| ||||||||||| ||||| | || ||||||
Sbjct 1007 AGGACCGGCACAAAGTCCA-TAGTGCCTGCGGCTTTTGTATCTTTCAAGA-GCCGTTGGG 1064
Query 1173 GCGCTGTTGTTTGCT-CTCAAACTCAACAGTCTCGAAACCCGACAGAGTGGCTAACCGAG 1231
| || | ||||| | ||||||||||||| | ||||||| ||||| ||||||||||||
Sbjct 1065 GAGCAGCGGTTTG-TGCTCAAACTCAACAAACAAGAAACCCAACAGAATGGCTAACCGAG 1123
Query 1232 TGGGCTCCAGAGCCGCGAGACATATACTGGGACAATCTAGCATTACCATATGTTC-AGCT 1290
|||||| ||||||| || ||||| |||| |||||||| ||||| |||||||| | | ||
Sbjct 1124 TGGGCTGCAGAGCCACGTGACATCTACTATGACAATCTGGCATTGCCATATGT-CGACCT 1182
Query 1291 CACA-ATCCGGAGACT-AGTAATAG-CTGTAGCTTTCTTCTTCCTCACTTTCTTCTTCAT 1347
| | || || | || | || | | | || || | |||||||||||| |||||||||||
Sbjct 1183 TA-AGATAAGGCGGCTCA-TAGTCGGC-GTCGCATACTTCTTCCTCACCTTCTTCTTCAT 1239
Query 1348 GATCCCTATAGC-TTTCGTACAGACACTCGCCAATATCGAAGGCATCGAAAAGGCTGTTC 1406
||| || ||||| ||| |||||| |||| ||||| ||||||||||| || |||||| |||
Sbjct 1240 GATACCAATAGCATTT-GTACAGTCACTTGCCAACATCGAAGGCATAGAGAAGGCTTTTC 1298
Query 1407 CGTTCTTGAAACCGCTTATCGAAGTGAAAACTGT-AAAGTC-ATTTATCCAAGGTTTTCT 1464
| |||||||| || ||||| ||||||||| ||| |||||| || ||||||||||| ||
Sbjct 1299 CTTTCTTGAAGCCCCTTATAGAAGTGAAAT-TGTTAAAGTCGATC-ATCCAAGGTTTCCT 1356
Query 1465 TCCGGGTATCGCATTGAAGATATTCCTCATTGTCCTCCCAAGTATACTAATGCTAATGTC 1524
||| || ||||| |||||||| |||||| || |||||||||| ||||| |||| ||||||
Sbjct 1357 TCCCGGAATCGCTTTGAAGATCTTCCTCCTTTTCCTCCCAAGAATACTGATGCAAATGTC 1416
Query 1525 GAAGTTCGAAGGCTTCATAAGCAAATCTTCACTAGAAAGAAG-GTGTGCAAGC-AGATAC 1582
|| |||||||| || | |||| ||| ||| |||||||||| | |||| | |||| |
Sbjct 1417 CAAATTCGAAGGTTTTGTCAGCACATCCTCATTAGAAAGAAGAGCC-GCAA-CTAGATTC 1474
Query 1583 TACATGTTCCAGTTCATCAACGTTTTCCTCTGTAGCATAATCGC-GGGAACTGCGCTTCA 1641
|||||||||||||||||||| ||||||||| | |||||| || | |||| ||||| ||||
Sbjct 1475 TACATGTTCCAGTTCATCAATGTTTTCCTCGGAAGCATAGTCACCGGGA-CTGCGTTTCA 1533
Query 1642 ACAACTTGACAGCTTCCTAAACCAATCTGCAACCGAAATACCGAAGACAATTGGTGTCTC 1701
||| || |||| ||||| ||||| ||||||| ||| || || || ||||||||||||||
Sbjct 1534 ACAGCTCAACAGTTTCCTTAACCAGTCTGCAAACGATATTCCAAAAACAATTGGTGTCTC 1593
Query 1702 GATACCAATGAAAGCCACTTTCTTTATCACCTACATAATGGTAGACGGATGGGCTGGTGT 1761
||| ||||||||||| || |||||||| || ||||||||||| || ||||||||||||||
Sbjct 1594 GATTCCAATGAAAGCGACCTTCTTTATAACATACATAATGGTTGATGGATGGGCTGGTGT 1653
Query 1762 TGCTGGAGAGATACTGAGGTTAAAGCCATTGATAATATATCATCTCAAGAACTTCTTCCT 1821
|||||| |||||| ||||||| |||||| | ||||| |||||||| ||||||| ||||||
Sbjct 1654 TGCTGGGGAGATATTGAGGTTGAAGCCACTCATAATCTATCATCTAAAGAACTCCTTCCT 1713
Query 1822 TGTGAAAACAGAGAAGGACAGAGAAGAAGCAA-TGGATCCTGGAACCATAGGTTTCAATA 1880
|||| ||| ||||| || || |||||||||| || |||||||||||||||| ||||| |
Sbjct 1714 CGTGAGAACCGAGAAAGATAGGGAAGAAGCAACTG-ATCCTGGAACCATAGGATTCAACA 1772
Query 1881 CTGGTGAACCTCAGATACAACTCTACTTCATTCTTGGTCTAGTTTACGCCGCTGTTAGCC 1940
||||||| ||||| ||||||||||||||| |||||||||| |||||||| || |||||||
Sbjct 1773 CTGGTGAGCCTCAAATACAACTCTACTTCCTTCTTGGTCTTGTTTACGCAGCAGTTAGCC 1832
Query 1941 CCATTCTCCTTCCTTTTATCCTCGTCTTCTTCG-CCTTAGCTTACGTGGTTTACCGTCAT 1999
|||| || || || ||||||||||||||||||| ||| |||| ||| || |||||||||
Sbjct 1833 CCATCCTTCTCCCCTTTATCCTCGTCTTCTTCGGCCTG-GCTTTCGTAGTGTACCGTCAT 1891
Query 2000 CAGATTATAAATGTGTATAACCAAGAGTATGAGAGTGCTGC-AGCGTTCTGGCCAGATGT 2058
||| |||||||||||||||| ||| ||||||| ||||| | | ||||||||| || ||
Sbjct 1892 CAGGTTATAAATGTGTATAATCAAAAGTATGAAAGTGCAGGGAA-GTTCTGGCCTGACGT 1950
Query 2059 TCATAGACGTGTAGTGATTGCACTGATCGTATCTCAGCTTCTTTTGATGGGA-TTGCTTA 2117
||| || ||||| |||| |||||| | || || ||||| || |||||||| || || |
Sbjct 1951 TCACAGGCGTGTTGTGACCGCACTGGTTGTTTCGCAGCTGCTCTTGATGGGTCTT-CTAA 2009
Query 2118 GCACGAAAAAAGCTGCTC-GTTCGACTCCATTGCTT-TTCATACTTCCTG-TGTTAACCA 2174
|||| ||| | ||| || || | |||||||| || || | ||||| | || | ||||
Sbjct 2010 GCACCAAACACGCTTCTAAGTCC-ACTCCATTTCTGCTTG-TGCTTCC-GCTGCTGACCA 2066
Query 2175 TTGGATTCCACAAATTCTGTCAAGGA-CGTTACCAACCTA-TATTTGTCACATACCCTTT 2232
| || |||||||| ||| ||| | |||||||||||| | ||||| |||||||| ||
Sbjct 2067 TCGGGTTCCACAAGCACTG-CAAAAATCGTTACCAACCTGCT-TTTGTAACATACCCGTT 2124
Query 2233 ACAG--G-ATGCAATGGTTAAAGATACGTTGGAACGCAT 2268
|||| | | || ||| | |||||||| |||| |||||
Sbjct 2125 ACAGCAGGAAGCTATGATCAAAGATACACTGGACCGCAT 2163
> Ahg338150 jgi|Araly1|338150|fgenesh1_pg.C_scaffold_2000249
Length=2337
Score = 555 bits (300), Expect = 8e-157
Identities = 1473/2020 (73%), Gaps = 158/2020 (8%)
Strand=Plus/Plus
Query 188 ATGGCGACACTAACCGATATCGGAGTCGCAGCAACGATCAATATTCTAACCGCATTTGCT 247
||||||||| || | ||||| ||||| |||||| |||| |||||||||| || |||| |
Sbjct 1 ATGGCGACATTAGCAGATATTGGAGTAGCAGCAGCGATTAATATTCTAAGTGC-TTTGAT 59
Query 248 TTCTTC-ATTGC-CTTTGCGATACTT-A-GACTTCAACCAGTT-AACGACAGAGTCTATT 302
| ||| ||||| ||||| || ||| | || | |||||| || || || || || ||||
Sbjct 60 AT-TTCTATTGCTATTTGCAAT-CTTGAGGA-TCCAACCA-TTCAATGATAGGGTTTATT 115
Query 303 TCCCTAAATGGTATCTCAAGGGT-TTAAGAAGTAGTCCTATAAAAACAGGTGGCTTTGC- 360
||||||||||||| || || ||| || ||||| || || | || | ||| ||||| |
Sbjct 116 TCCCTAAATGGTACCTAAAAGGTGTT-AGAAGCAGCCCGGTGAATTCGGGT-GCTTT-CG 172
Query 361 T-AGCAAGTTTGTCAATTTGGATTTTCGATCTTAC-ATCAGATTCTTGAATTGGATG-CC 417
| |||||| || | |||||||| |||||||| ||| || | || || ||||||||| ||
Sbjct 173 TGAGCAAGATTATGAATTTGGACTTTCGATCATACGTTC-GGTTTTTAAATTGGATGCCC 231
Query 418 TCAAGCTTTG-AGAATGCCTGAGCCTGAACTTATTGATCATGCTGGTTTGGATTCTGTTG 476
| |||||| || ||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 232 GC-CGCTTTGAAG-ATGCCAGAGCCTGAACTTATTGATCATGCTGGTTTGGATTCTGCTG 289
Query 477 TCTATCTC-AGGATTTACTT-ACTCGGG-TTGAAGATCTTTTTTCCTATAGCATGTATTG 533
| || || ||||||||||| | | ||| || ||||||||| | || || |||| ||
Sbjct 290 TTTA-CTTGAGGATTTACTTGA-TAGGGCTT-AAGATCTTTGTCCCGATCGCAT-TA--- 342
Query 534 CTTTCACTG-T--A-A-TGGTACCGGTTAATTGGACTAACTCGACG--TTGGATC-AGTT 585
|||||| || | | | | ||||| || |||||||| | | || | ||| | | ||
Sbjct 343 CTTTCA-TGGTCGATACTAGTACCTGTCAATTGGACCAG-T-GATGGATTGCAGCTAGCA 399
Query 586 AAA----G-AATCTAACTTTTAGTGATATTGATAAACTCTCTATATCGAATATACCAAC- 639
||| | ||| | || | ||| |||| ||||| || || || || ||| | | |||
Sbjct 400 AAACTTCGTAATGTGACATCAAGTAATATCGATAAGCTTTCGATTTCAAATGT-CGAACG 458
Query 640 TGGATCATCCAGGTTTTGGGTGCAT-TTGTGTATGGCTTATGTTATT-ACCTTTTGGACT 697
||||||| ||||||||||| ||| ||||| |||||||||| ||| || |||||||||
Sbjct 459 TGGATCAGACAGGTTTTGGGCACATCTTGTG-ATGGCTTATGC-ATTCACATTTTGGACT 516
Query 698 TGCTTTGTCCTAC--AACGAGAGTACAAGCATATTGCTTCCATGAGGCTA-CAGTTTCTT 754
|||| ||| ||| || || | || || | |||||| | ||| || || | |||||
Sbjct 517 TGCTATGTTCTAATGAAGGA-A-TATGAGAAAATTGCTGCAATGCGGTTATCT-TTTCTC 573
Query 755 GCT-TCTGAGCATAG-GA-GAC-CTGACCAGTTTACTGTTCTTGTAAGGAACATTCCTCC 810
| || ||| | || || | | |||| || || |||||||| || |||||| | || ||
Sbjct 574 -CAATCCGAG-A-AGCGACG-CGCTGATCAATTCACTGTTCTGGTTAGGAACGTACCACC 629
Query 811 AGA-TCCTGATGAATCAGTAAGTGAGCTCGTTG-AGCATTTCTTTAAGGTCAACCATCCA 868
|| || || || ||| | || || ||| | ||||||||||| || ||||| ||
Sbjct 630 GGACTCA-GACGAGTCAATTAGGGAAAACGT-GCAGCATTTCTTTCTTGTTAACCACCCG 687
Query 869 GACTACTACCTCACTTACCAGGCGGTCTACAACGCAAAC-AAGCTGTCGGAACTGGTACA 927
||| | || || || | |||| ||| ||||| ||||| || || | ||||||||
Sbjct 688 GACCATTATCTTACACATCAGGTGGTGTACAATGCAAATGAAT-TGGCTAAACTGGTA-- 744
Query 928 GAAGAG--GATGAAATTGCAGAATTGGCTT-GATTACTATCAAAACAAACACTCTAGGAA 984
|||||| || |||| ||||||||||| || |||||||| || || | || || ||
Sbjct 745 GAAGAGAAGAAGAAAATGCAGAATTGG-TTAGATTACTACCATTTGAAGTATTCAAGAAA 803
Query 985 TCCATCTA-AAAGGCCTTTAATAAAGATTGG--TTTCCTTGG-CTGTTGGGGTGAAGAA- 1039
| | | ||||||| ||||| |||| |||| | || || | |||| |||||
Sbjct 804 -CAAGGAACAAAGGCCACGGGTAAAG-TTGGGATTTC-TCGGGCTAT-GGGGA-AAGAAA 858
Query 1040 GTTGATGCAATTGATCACTACATAGAAAAAATCGAGGGTCTAA-CGAGAAAAATAAGTG- 1097
|| |||||||| ||||| |||| || | |||||| |||| |||| ||| ||| ||
Sbjct 859 GTAGATGCAATGGATCATTACACAGCTGAGATCGAGAAACTAAGCGAGCAAA-TAA-TGG 916
Query 1098 AAGAGA--AAGAGACAGTAATGA--GCA-GCACAAAA-TC-ACTCGTACCTGCAGCTTTT 1150
|||| | |||||| | ||| || | | | |||||| | | | | || ||||||||
Sbjct 917 AAGAAAGGAAGAGA-A-TAAAGAAAG-ATG-ACAAAAGTGTAAT-G--CCAGCAGCTTTC 969
Query 1151 GTATCCTTCAAAAAGCGTTGGGGCGCTGTTGTTTGCTCTCAAACTCAACAGTCTC-GAAA 1209
|| || || |||| |||||||||||||| || ||| | || || |||||| | |||
Sbjct 970 GTGTCTTTTAAAACGCGTTGGGGCGCTGCAGTCTGCGCACAGACACAACAGACGAAGAAT 1029
Query 1210 CCCGACAGAGTGGCTAACCGAGTGGGCTCCAGAGCCGCGAGACATATACTGGGACAATCT 1269
|| || || ||| ||||||| |||||||| ||| | |||| || |||||||| |||||
Sbjct 1030 CCA-ACGGAATGGTTAACCGAATGGGCTCCCGAGGCAAGAGAAATGTACTGGGAAAATCT 1088
Query 1270 AGCATTACCATATGT-TCAGCTCACAATCCGGAGACTAGTAATAGCTG-TAGCTTTCTTC 1327
||| | || || | || ||||| | ||||| | ||||| || | || ||||||
Sbjct 1089 CGCAATGCCTTACGCATCT-CTCACTTTAAGGAGATTTGTAAT-GCACATTGCCTTCTTC 1146
Query 1328 TTCCTCACTTTCTTCTTCATGATCCCTATAGC-TTTCGTACAGA-CACTC-GCCAATATC 1384
|||||||| ||||| ||||| ||||| || || ||| || || | | || || | |||
Sbjct 1147 TTCCTCACATTCTTTTTCATCATCCCAATCGCATTT-GTGCA-ATC-CTTAGCGAGTATT 1203
Query 1385 GAAGGCATCGA-AAAGGCTGTTCCGTTCTTGAAACCGC-TTATCGAAGTGAAAACTGT-A 1441
||||| ||| | ||| | | ||||||| | | || | || ||||| ||| | | |
Sbjct 1204 GAAGGTATCCAGAAATCC-GCTCCGTTCCTCAGTCC-CATTGTCGAAAAGAAGTTTATGA 1261
Query 1442 AAGTCATTTATCCAAGGTTTTCTTCCGGGTATCGCATTGAAGATATTCCTCAT-TGTCCT 1500
|| ||||| ||||||||||||||||| ||||| | |||||| | || | || | || |
Sbjct 1262 AA-TCATTGATCCAAGGTTTTCTTCCCGGTATTGTTTTGAAGCTCTTTTTGATATTTC-T 1319
Query 1501 CCCAAGTATACTAATGCTAATGTCGAAGTTCGAAGGCTTCATAAGCAA-ATCTTCACTAG 1559
|||| || | ||| | |||||||| |||||||| || || ||| ||| || |||
Sbjct 1320 ACCAACAATTTTGATGATCATGTCGAAATTCGAAGGGTTTATTT-CAATATCATCGTTAG 1378
Query 1560 AAAGAAG-GTGTGCAAG-CAGATACTACATGTTCCAG-TTCATCAACGTTTTCCTCTGTA 1616
| ||||| | | || | ||||||| || ||| | || | || ||||||||| |||
Sbjct 1379 AGAGAAGAGCG-GCTTTTC-GATACTATATTTTCAACCTTG-TGAATGTTTTCCTCGGTA 1435
Query 1617 GCATAATCGCGGGAACTGCGCTTCAACAACTTGACAGCTTC-CT-AAACCAATCTGCAAC 1674
|||||||| | ||| |||| || |||| || || ||| || |||| |||| ||||
Sbjct 1436 GCATAATCACTGGATCTGCATTTGAACAGCTCGATT-CTTTTCTTAAAC-AATCCGCAAA 1493
Query 1675 CGAAATACCGAAGACAATTGGTGTCTCGATACCAATGAAAGCCACTTTCTTTATCACCTA 1734
||| || ||| |||| |||| || ||||||| || ||||| || |||||||| || ||
Sbjct 1494 CGACATTCCGCGGACAGTTGGAGTAGCGATACCGATAAAAGCAACCTTCTTTATAACATA 1553
Query 1735 CATAATGGTAGACGGATGGGCTGGTGTTGCTGGAGAGATACTGAGGTT-AAAGCCATT-G 1792
|||||||||||||| ||||| ||||| || ||||| || | ||| | ||| ||||| |
Sbjct 1554 TATAATGGTAGACGGTTGGGCGGGTGTGGCCGGAGAAATTTTTAGGCTGAAA-CCATTAG 1612
Query 1793 ATAATATATC-ATCTCAAGAACTTCTTCCTTGTGAAAACAGAGAAGGACAGAGAAGAAGC 1851
| || | || || | |||||||||||| |||||||||| || |||||||||||||||||
Sbjct 1613 -TCATTT-TCCATTTAAAGAACTTCTTCTTTGTGAAAACTGAAAAGGACAGAGAAGAAGC 1670
Query 1852 AATGGATCCTGGA-ACCATAGGTTTCAATACTGGTGAACCTCAGATACAACTCTACTTCA 1910
|||||||| ||| | || | |||| | || || |||| ||| ||||| || |||
Sbjct 1671 TATGGATCCGGGACAG-ATCGATTTCTACGCTACAGAGCCTCGGATTCAACTATATTTCC 1729
Query 1911 TTCTTGGTCTAGTTTACGC-CGCTGTTA-GCCCCATTCTCCTTCCTTTTATCCTCGTCTT 1968
| ||||| || || ||||| | | || | ||| |||| |||||||| ||| || ||||
Sbjct 1730 TCCTTGGCCTTGTCTACGCTC-CGGTCACGCCTG-TTCTACTTCCTTTCATCATCTTCTT 1787
Query 1969 CTTCGCCTTAGCTTACGTGGT-TTACCGTCATCAGATTATAAATGTGTATAACCAAGA-G 2026
||||| || || ||| | || || |||||||||||| ||||||||||| | || || |
Sbjct 1788 CTTCGGTTTCGCCTACCTCGTCTT-CCGTCATCAGATCATAAATGTGTACGATCA-GAAG 1845
Query 2027 TATGAGAGTGCTGCAGCGTTCTGGCCAGATGTTCATAGACGTGTAGTGATTG-CACTGAT 2085
|||||||| || || || |||||||| || |||||| ||||| || | || | || ||||
Sbjct 1846 TATGAGAGCGCGGCTGCATTCTGGCCTGACGTTCATGGACGTATAAT-ATCGGCATTGAT 1904
Query 2086 CGTATCTCAGCTTCTTTTGATGGGATTGCTTAGCACGAAA 2125
| | || || |||||||| ||||||| | |||||||||
Sbjct 1905 CATCTCACAAATTCTTTTGTTGGGATTAATGAGCACGAAA 1944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95911236910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5