BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21630.1
Length=2063
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479684 jgi|Araly1|479684|fgenesh2_kg.3__2385__AT3G21630.1 2782 0.0
> Ahg479684 jgi|Araly1|479684|fgenesh2_kg.3__2385__AT3G21630.1
Length=1949
Score = 2782 bits (1506), Expect = 0.0
Identities = 1769/1893 (93%), Gaps = 29/1893 (2%)
Strand=Plus/Plus
Query 52 ATGAAGCTAAAGATTTCTCTAATCGCTCCG---Attcttcttctcttctca--------t 100
|||||||| || | |||||||||||||||| ||||||||||||||||| |
Sbjct 1 ATGAAGCT-AA-A-TTCTCTAATCGCTCCGCTTCTTCTTCTTCTCTTCTCATCGTCGTTT 57
Query 101 -tcttcttcGCCGTGGAATCTAAGTGCAGG-ACTAGCTGTC-CTTTAGCTCTAGCTTCGT 157
||||||||||||| ||||||||||||||| || ||||| | ||||||||||||||| |
Sbjct 58 CTCTTCTTCGCCGTCGAATCTAAGTGCAGGAAC-AGCTG-CGATTTAGCTCTAGCTTCTT 115
Query 158 ACTATC-TCGAGAACGGAACAACACTCTCCGTCATCAACCAAAACCTCAATTCTTCAATC 216
|||| | ||| ||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 116 ACTA-CGTCGCTAACGGAACAACTCTCTCCGCCATCAACCAAAACCTCAATTCTTCAATC 174
Query 217 GCGCCTTACGATCAAATCAATTTCGATCCAATCCTCAGGTACAA-CAGTAACATTAAAGA 275
||||||||||||||| ||||||||||||||||||| |||||||| | | ||||||| |||
Sbjct 175 GCGCCTTACGATCAAGTCAATTTCGATCCAATCCTTAGGTACAACCCG-AACATTAGAGA 233
Query 276 CAAAGATAGAATCCAGATGGGCTCTAGGGTTCTTGTACCTTTCCCTTGCGAATGTCAACC 335
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 234 CAAAGATAGAATCCAGATGGGTTCTAGGGTTCTTGTACCTTTCCCTTGCGAATGTCAGCC 293
Query 336 TGGTGATTTCCTAGGGCACAATTTCAGCTACAGTGTTCGACAGGAAGATACTTACGAAAG 395
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 294 TGGTGATTTTCTAGGGCACAATTTCAGCTACAGTGTTCGACAAGAAGATACTTATGAAAG 353
Query 396 AGTCGCGATTAGTAATTACGCGAATCTCACGACGATGGAGTCGTTACAGGCGAGGAATCC 455
||| ||||| || |||||||||||| | |||||| |||| || || ||||||||||||||
Sbjct 354 AGTGGCGATCAGGAATTACGCGAATTTAACGACGGTGGAATCCTTGCAGGCGAGGAATCC 413
Query 456 TTTTCCGGCGACTAACATACCTCTCTCTGCGACGCTTAATGTATTGGTGAATTGTTCTTG 515
||||||||||||||| || || |||||||||||||||||||| |||||||||||||||||
Sbjct 414 TTTTCCGGCGACTAATATCCCGCTCTCTGCGACGCTTAATGTGTTGGTGAATTGTTCTTG 473
Query 516 TGGTGATGAGAGTGTTTCGAAAGATTTTGGTTTGTTTGTTACGTATCCGCTTCGTCCTGA 575
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 474 TGGTGATGAGAGTGTTTCTAAGGATTTTGGTTTGTTTGTTACTTATCCGCTTCGTCCTGA 533
Query 576 AGACAGTCTCAGTTCTATTGCGAGATCTTCCGGTGTATCGGCGGATATTCTGCAGAGATA 635
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 534 GGATAGTCTCAGTTCGATTGCGAGATCTTCCGGTGTATCGGCGGATATTCTGCAGAGGTA 593
Query 636 TAATCCCGGTGTTAATTTTAACTCCGGGAATGGAATCGTTTATGTGCCTGGAAGAGATCC 695
|||||| | ||||||||||||||| |||||||||||||||||||| || |||| ||||||
Sbjct 594 TAATCCTGATGTTAATTTTAACTCAGGGAATGGAATCGTTTATGTCCCGGGAAAAGATCC 653
Query 696 AAATGGTGCATTTCCACCATTCAAATCAAGTAAACAAGATGGTGTTGGTGCTGGAGTTAT 755
|| ||||||||||||| | ||||||||||||||||||| |||| ||||||||||||||||
Sbjct 654 AAGTGGTGCATTTCCAGCTTTCAAATCAAGTAAACAAGGTGGTATTGGTGCTGGAGTTAT 713
Query 756 TGCTGGTATAGTTATAGGAGTGATTGTGGCTTTGTTGTTGATCTTGTTTATCGTATATTA 815
||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 714 TGCTGGTATAGTTGTAGGAGTGATTGTGGCTTTGTTGTTAATCTTGTTTATCATATATTA 773
Query 816 TGCTTACCGGAAGAATAAGTCGAAGGGTGATTCGTTTTCTTCTTCTATTCCGTTGTCTAC 875
|||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 774 TGCTTACCGGAAGAGCAAGTCGAAGGGTGATTCGTATTCATCTTCTATTCCGTTGTCTAC 833
Query 876 TAAGGCTGATCATGCTTCTTCTACTAGTCTCCAAAGTGGAGGTTTGGGTGGTGCCGGAGT 935
||||||||||| |||||||||||| || |||||||||||||| ||||||||| |||||||
Sbjct 834 TAAGGCTGATCTTGCTTCTTCTACCAGCCTCCAAAGTGGAGGCTTGGGTGGTACCGGAGT 893
Query 936 GTCTCCTGGCATTGCTGCCATAAGCGTGGACAAATCTGTTGAGTTTTCGTTGGAGGAACT 995
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 894 ATCTCCTGGCATTGCTGCCATAAGCGTGGACAAATCTGTTGAGTTTACGTTGGAGGAGCT 953
Query 996 AGCAAAGGCTACTGATAATTTCAATTTGTCTTTTAAGATTGGGCAAGGTGGTTTTGGGGC 1055
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 954 CGCAAAGGCTACTGATAATTTCAATCTGTCTTTTAAGATTGGTCAAGGTGGTTTTGGGGC 1013
Query 1056 TGTTTACTATGCAGAGCTGAGAGGAGAAAAAGCTGCGATTAAGAAGATGGACATGGAGGC 1115
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1014 TGTTTACTATGCAGAGCTGAGAGGAGAAAAAGCTGCGATCAAGAAGATGGACATGGAGGC 1073
Query 1116 ATCGAAACAGTTCTTGGCGGAACTAAAAGTCTTAACGCGTGTACATCATGTCAACCTGGT 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 ATCGAAACAGTTCTTGGCGGAACTAAAAGTCTTAACGCGTGTACATCATGTCAACCTGGT 1133
Query 1176 TCGCCTGATTGGATATTGTGTTGAGGGATCACTTTTCTTGGTGTATGAATATGTTGAGAA 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TCGCCTGATTGGATATTGTGTTGAGGGATCACTTTTCTTGGTGTATGAATATGTTGAGAA 1193
Query 1236 TGGTAACCTTGGACAACATTTACATGGGTCAGGACGAGAACCATTACCGTGGACTAAGAG 1295
||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1194 TGGCAACCTTGGACAACATTTACATGGGTCAGGACAAGAACCACTACCGTGGACTAAGAG 1253
Query 1296 AGTGCAGATTGCACTAGACTCAGCTAGAGGTTTAGAATATATCCACGAGCACACGGTTCC 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 AGTGCAGATTGCACTAGACTCAGCTAGAGGTTTAGAATATATCCACGAGCACACGGTTCC 1313
Query 1356 AGTTTATGTCCATAGGGACATTAAATCTGCCAATATTTTGATAGACCAGAAATTCCGAGC 1415
|| |||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1314 TGTCTATGTCCACAGGGACATTAAATCTGCCAATATTTTGATAGACCAGAATTTTCGAGC 1373
Query 1416 AAAGGTAGCAGATTTCGGGTTAACAAAACTGACAGAAGTTGGAGGTTCAGCAACTCGGGG 1475
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1374 AAAGGTAGCAGATTTCGGGTTAACAAAACTGACAGAAGTTGGAGGCTCAGCAACTCGTGG 1433
Query 1476 TGCAATGGGTACATTTGGTTACATGGCACCAGAGACTGTTTATGGAGAAGTGTCTGCAAA 1535
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1434 TGCAATGGGTACATTTGGTTACATGGCACCAGAGACTGTTTATGGAGAAGTATCTGCAAA 1493
Query 1536 AGTAGATGTATATGCATTTGGAGTTGTCCTTTACGAATTGATTTCTGCGAAAGGTGCGGT 1595
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1494 AGTAGATGTATATGCATTTGGAGTTGTCCTTTACGAATTGATTTCTGCGAAAGGCGCGGT 1553
Query 1596 TGTCAAAATGACAGAAGCCGTTGGTGAATTTAGAGGCCTTGTTGGTGTGTTCGAAGAATC 1655
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1554 TGTCAAAATGACGGAAGCCGTTGGTGAATTTAGAGGCCTCGTTGGTGTGTTCGAAGAAGC 1613
Query 1656 ATTCAAGGAAACCGACAAAGAAGAAGCACTACGCAAGATTATAGACCCGAGGCTCGGTGA 1715
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 1614 ATTCAAGGAGACCGACAAAGAAGAAGCACTACGTAAGATTATAGACCCGAGGCTTGGGGA 1673
Query 1716 TAGTTACCCGTTTGATTCGGTATACAAGATGGCGGAATTAGGGAAAGCATGTACACAAGA 1775
||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1674 TAGCTACCCGTTTGATTCGGTATATAAGATGGCGGAATTAGGGAAAGCTTGTACACAAGA 1733
Query 1776 GAATGCGCAGCTACGTCCGAGTATGAGATACATTGTGGTTGCTTTATCCACTCTCTTT-T 1834
|||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1734 GAATGCTCAACTACGTCCGAGTATGAGATACATTGTGGTTGCTTTATCCACTCT-TTTCT 1792
Query 1835 CGTCTACCGGAAATTGGGATGTTGGAAACTTCCAAAACGAAGATTTAGTCAGTCTTATGT 1894
|||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1793 CGTCAACCGGAAATTGGGATGTTGCAAACTTCCAAAACGATGATTTAGTCAGTCTTATGT 1852
Query 1895 CCGGCCGGTAGACTCGTTTTCCGGTTTGCTGTT 1927
| |||||||||| |||| |||||||||||||
Sbjct 1853 CTGGCCGGTAGA---GTTT-CCGGTTTGCTGTT 1881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77589829065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5