BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21640.1
Length=1342
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930126 jgi|Araly1|930126|scaffold_302583.1 1757 0.0
> Ahg930126 jgi|Araly1|930126|scaffold_302583.1
Length=1139
Score = 1757 bits (951), Expect = 0.0
Identities = 1065/1121 (95%), Gaps = 3/1121 (0%)
Strand=Plus/Plus
Query 131 CAGGTTGATTTGG-GAAATAATGGATGAATCTCTGGAGCATCAAACTCAAACACATGACC 189
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 CAGGTTGATTTGGAAAAATAATGGATCAATCTCTGGAGCATCAAACTCAAACACATGACC 60
Query 190 AAGA-GAGCGAAATAGTTACTGAAGGAAGTGCCGTTGTGCATAGTGAGCCATCTCAAGAG 248
|||| || |||||||||||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct 61 AAGAGGA-CGAAATAGTTACTGAAGGAAGTGCTGTTGTGCATGGTGAGCCTTCTCAAGAT 119
Query 249 GGTAATGTTCCTCCTAAAGTTGATAGTGAAGCTGAGGTCTTGGATGAGAAAGTCAGTAAG 308
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 GGTAGTGTTCCTCCTAAAGTTGATAGTGAAGCTGAGGTTTTGGATGAGAAAGTCAGTAAG 179
Query 309 CAGATTATAAAGGAAGGTCACGGTTCCAAACCATCCAAGTACTCTACATGCTTTTTGCAC 368
||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 180 CAGATCATAAAGGAAGGTCATGGTTCCAAACCATCCAAGTACTCGACATGCTTTTTACAC 239
Query 369 TACAGGGCATGGACCAAAAACTCGCAGCACAAATTTGAGGATACATGGCATGAGCAGCAA 428
|| ||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||
Sbjct 240 TATAGGGCATGGACCAAAAATTCGCAGCATAAATTTGAAGATACATGGCAAGAGCAGCAA 299
Query 429 CCTATTGAATTGGTTCTTGGAAAAGAGAAAAAAGAACTAGCCGGTTTAGCCATCGGTGTT 488
|||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||
Sbjct 300 CCTATTGAATTGGTTCTTGGAAAAGAGAAAAAAGAATTGGCCGGTTTGGCCATCGGTGTT 359
Query 489 GCTAGCATGAAGTCTGGTGAACGTGCGCTTGTGCATGTTGGCTGGGAATTAGCTTATGGG 548
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 360 TCTAGCATGAAGTCTGGTGAACGTGCGCTTGTGCATGTTGGCTGGGAATTGGCTTATGGG 419
Query 549 AAAGAAGGAAACTTTTCTTTTCCGAATGTTCCACCTATGGCAGACTTGTTATATGAGGTG 608
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 420 AAAGAAGGAAACTTTTCTTTTCCGAATGTTCCACCTATGGCGGACTTGTTGTATGAGGTT 479
Query 609 GAAGTTATTGGGTTTGATGAAACAAAGGAGGGAAAAGCTCGCAGTGATATGACTGTAGAG 668
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 480 GAAGTTATTGGATTTGATGAAACAAAGGAGGGAAAGGCTCGCAGTGATATGACTGTGGAG 539
Query 669 GAAAGGATTGGTGCAGCAGACAGAAGAAAAATGGATGGGAATTCTCTTTTTAAGGAGGAG 728
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 540 GAAAGGATTGGTGCAGCAGACAGAAGAAAAATGGATGGAAATTCTCTGTTTAAGGAGGAG 599
Query 729 AAACTGGAGGAAGCCATGCAACAGTATGAAATGGCCATAGCATACATGGGGGACGATTTT 788
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAACTGGAGGAGGCCATGCAACAGTATGAAATGGCCATAGCATACATGGGGGACGATTTT 659
Query 789 ATGTTTCAGCTGTATGGGAAGTACCAGGATATGGCTTTAGCAGTTAAAAACCCATGCCAT 848
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 ATGTTTCAGCTGTATGGGAAGTATCAGGATATGGCTTTAGCAGTTAAAAACCCATGCCAC 719
Query 849 CTTAACATAGCAGCTTGCCTCATCAAACTAAAACGATACGATGAAGCAATTGGTCACTGC 908
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 720 CTAAACATAGCAGCTTGCCTCATCAAGCTAAAACGATACGATGAAGCAATTGGTCACTGC 779
Query 909 AACATTGTGTTGACAGAAGAAGAGAAAAACCCAAAAGCACTGTTCAGAAGAGGGAAAGCA 968
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 780 AACATTGTGTTGACAGAAGAAGAGAAAAACCCAAAAGCACTGTTCAGAAGAGGGAAGGCA 839
Query 969 AAGGCAGAGCTAGGACAGATGGACTCAGCACGTGATGATTTCCGAAAGGCACAAAAGTAT 1028
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 840 AAGGCAGAGCTAGGACAAATGGACTCAGCACGTGATGATTTCCGAAAGGCGCAAAAGTAT 899
Query 1029 GCTCCTGACGACAAGGCGATTAGAAGAGAGCTACGAGCACTTGCAGAGCAAGAGAAAGCC 1088
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GCTCCTGATGACAAGGCGATTAGAAGAGAGCTACGAGCACTTGCAGAGCAAGAGAAAGCT 959
Query 1089 TTGTACCAAAAGCAGAAAGAAATGTACAAAGGAATATTCAAAGGGAAAGATGAAGGTGGT 1148
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 960 TTGTACCAAAAGCAGAAAGAAATGTACAAAGGAATATTCAAAGGGAAAGAAGAAGGCGGT 1019
Query 1149 GCTAAGTCAAAGAGCCTTTTTTGGTTGATAGTGTTATGGCAATGGTTTGTTTCCCTTTTC 1208
|| ||| ||| ||||| | ||||||||| |||||||||||||||| ||||||||||||
Sbjct 1020 GCCAAGGCAATGAGCCGTAACTGGTTGATACTGTTATGGCAATGGTTGGTTTCCCTTTTC 1079
Query 1209 TCCCGTATCTTTCGACGCCACAGAGTTAAAGCAGATTAATG 1249
||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1080 TCCCGGATCTTTCGACGCCACAGAGTTAAAGCAGATTGATG 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50207881689
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5