BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21650.1
Length=2338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930127 jgi|Araly1|930127|scaffold_302584.1 2538 0.0
Ahg329973 jgi|Araly1|329973|fgenesh1_pm.C_scaffold_7002200 1288 0.0
> Ahg930127 jgi|Araly1|930127|scaffold_302584.1
Length=1671
Score = 2538 bits (1374), Expect = 0.0
Identities = 1576/1673 (94%), Gaps = 16/1673 (1%)
Strand=Plus/Plus
Query 565 GGGTTTGTGCCAATAGTTAGAAATGATCAAACAGATATTTGGGAAATTACCTAGAAAGCC 624
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1 GGGTTTGTGCCAATAGTTAGAAATGATCAAGCAGATATTTGGGAAATTACCTCGAAAGCC 60
Query 625 TTCCAAATCATTGCAGAATGACTCCAATGGTGAAGGAGGTGTTAATAATTCTTATTATGC 684
||||||||| ||||||||||| || |||||||||||||||| | ||| |||||||||||
Sbjct 61 TTCCAAATCTTTGCAGAATGATTCTAATGGTGAAGGAGGTG-T--TAACTCTTATTATGC 117
Query 685 TTCGAATTCGAGTACTACTAGTATCTCTAAACCTTCTTCAACATCTTCGAAATCATCATC 744
|||||||||||||| || ||||||||| |||||||||||| ||||||| |||||||||||
Sbjct 118 TTCGAATTCGAGTAGTAGTAGTATCTCGAAACCTTCTTCAGCATCTTCCAAATCATCATC 177
Query 745 AGCCTCGGGTTCGCGTGTAGCTAATGGAACTCTTGCTCCTAACTCAATGAGCTCTAATAG 804
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 178 AGCCTCGGGTTCACGTGTAGCTAATGGAACTCTTGCTCCTAACTCATTGAGCTCT-A-A- 234
Query 805 GAATACTAATCAAGGGAAGAAACCATTGGGAGGAGATGCTGTTGTACAAGCTGGACCG-T 863
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 235 CAAGACTAATCAAGGGAAGAAACCATTGGGAGGAGATGCTGTTGTACAAGCTGGACCGTT 294
Query 864 TTCCGTCTTCTGGTGGGGTTTATGAGGCTTTGCCTAGCTTTAGAGATGTTCCTATATCGG 923
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 295 TTCC-CCTTCTGGTGGGGTTTATGAGGCTTTGCCTAGCTTTAGAGATGTTCCTATCTCGG 353
Query 924 AGAAACCGAATCTCTTTATCGGGAAGTTGAGTATGTGCTGTGTTGTTTTTGACTTTAGTG 983
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 354 AGAAACCGAATCTCTTTATCGGGAAGTTGAGTATGTGCTGTGTTGTCTTTGACTTTAGTG 413
Query 984 ATCCGTCTAAGAACCTTAAGGAGAAAGAGATTAAGAGGCAGACATTGCTTGAGCTTGTTG 1043
|||| || |||||||| || ||||||||||||||| ||||||||||||||||||| ||||
Sbjct 414 ATCCATCGAAGAACCTAAAAGAGAAAGAGATTAAGCGGCAGACATTGCTTGAGCTCGTTG 473
Query 1044 ATTATGTTGCATCAGTTGGTTTTAAGTTTAACGATGTTTCGATGCAAGAGTTAACGAAGA 1103
|||||||||||||||||||| | |||||||| |||||| ||||||||||| | || ||||
Sbjct 474 ATTATGTTGCATCAGTTGGTGTGAAGTTTAATGATGTTGCGATGCAAGAGCTCACAAAGA 533
Query 1104 TGGTAGCGGTTAATCTGTTTAGAACTTTTCCTTCTGCGAATCACGAGAGTAAAATTCTTG 1163
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 534 TGGTAGCGATTAATCTGTTTAGAACGTTTCCTTCTGCGAATCACGAGAGTAAAATTCTTG 593
Query 1164 AAATACATGATATGGATGATGAAGAACCTTCTTTGGAGCCAGCTTGGCCTCATGTTCAAG 1223
|||| ||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||
Sbjct 594 AAATGCATGATATGGATGATGAGGAACCTTCGTTGGAGCCAGCTTGGCCTCATATTCAAG 653
Query 1224 TTGTGTATGAGATTCTT-CTCAGATTCGTGGCTTCTCCCATGACTGATGCAAAGCTTGCC 1282
|||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 654 TTGTGTATGAGATT-TTGCTCAGATTCGTGGCTTCTCCCATGACTGACGCAAAGCTTGCA 712
Query 1283 AAGAGATATATTGACCATTCTTTTGTCTTGAAGCTCTTAGACTTGTTTGATTCTGAAGAT 1342
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 713 AAGAGATATATTGACCATTCCTTTGTCTTGAAGCTGTTAGACTTGTTTGATTCTGAAGAT 772
Query 1343 CAAAGAGAGAGGGAATATCTAAAAACTATTCTGCATCGGGTGTACGGGAAGTTCATGGTG 1402
|||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||
Sbjct 773 CAAAGAGAGAGGGAATATTTGAAAACTATTCTGCATCGGGTCTACGGGAAGTTCATGGTG 832
Query 1403 CATCGACCTTACATCAGAAAGGCGATAAACAATATCTTCTACAGATTCATATCCGAGACT 1462
|||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 833 CATCGACCCTATATCAGAAAGGCGATAAACAATATCTTCTACAGATTCATTTCCGAGACT 892
Query 1463 GAAAAGCATAATGGCATTGCGGAGTTGCTAGAGATTCTTGGAAGTATAATTAATGGTTTT 1522
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 893 GAAAAGCATAATGGCATTGCAGAGTTGCTAGAGATTCTTGGAAGTATAATTAATGGGTTT 952
Query 1523 GCTTTGCCTTTAAAAGAAGAGCACAAGCTCTTCCTTTTGCGAGCCTTGATTCCTCTCCAC 1582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 GCTTTGCCTTTAAAAGAAGAGCACAAGCTCTTCCTTTTGCGAGCCTTGATTCCTCTCCAC 1012
Query 1583 AAGCCTAAATGTTCATCAGTCTATCACCAACAGCTTTCGTATTGCATTGTTCAGTTTGTA 1642
||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1013 AAGCCTAAATGTTCATCGGTCTATTTCCAACAGCTTTCGTATTGCATAGTTCAGTTTGTA 1072
Query 1643 GAAAAGGACTTCAAGCTCGCTGATACCGTTATTAGAGGTCTTTTAAAATATTGGCCTGTG 1702
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1073 GAAAAGGACTTCAAGCTCGCTGATACCGTTATTAGAGGCCTTTTAAAATATTGGCCTGTG 1132
Query 1703 ACTAACAGCTCAAAGGAAGTTATGTTTCTTGGAGAGTTAGAAGAAGTCTTGGAAGCAACT 1762
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1133 ACTAACAGCTCAAAGGAAGTAATGTTTCTTGGAGAGTTAGAAGAAGTCTTGGAGGCAACG 1192
Query 1763 CAAGCCGCTGAGTTTCAACGTTGTATGGTTCCATTATCCCGACAAATTGCTCGATGCCTC 1822
||||||||||||||||| || |||||||| || |||||||||||||||||||||||||||
Sbjct 1193 CAAGCCGCTGAGTTTCAGCGCTGTATGGTCCCTTTATCCCGACAAATTGCTCGATGCCTC 1252
Query 1823 AACAGTTCACATTTCCAGGTTGCTGAAAGAGCATTGTTTCTATGGAACAACGATCACATA 1882
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1253 AACAGTTTGCATTTTCAGGTTGCTGAAAGAGCATTGTTTCTATGGAACAACGATCATATA 1312
Query 1883 AGAAACCTGATCACTCAGAACCATAAAGTGATAATGCCTATAGTCTTCCCAGCTCTTGAG 1942
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1313 AGAAACCTGATCACTCAGAACCATAAAGTAATAATGCCTATAGTCTTCCCAGCTCTCGAG 1372
Query 1943 AGAAACACGCGTGGACATTGGAACCAAGCAGTTCAAAGTCTGACTATAAACGTGAGGAAA 2002
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 AGAAACACGCGAGGACACTGGAACCAAGCAGTTCAAAGTCTGACTATAAACGTGAGGAAA 1432
Query 2003 GTATTATGCGAGATTGACCAAGTTCTTTTCGACGAGTGTTTAGCCAAATTCCAAGTAGAA 2062
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 GTATTCTGCGACATTGACCAAGTTCTTTTCGACGAGTGTTTAGCCAAATTCCAAGTAGAA 1492
Query 2063 GAAGTGAATAAAACAGAGGTTAAAGCGAAACGGGAAAGGACATGGCAACGGTTAGAAGAT 2122
|||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1493 GAAGAGAATAAAACAGAGGTTAAAGCGAAACGGGAAAGAACATGGCAGCGGTTAGAAGAT 1552
Query 2123 TTAGCTACTTCAAAGACCGTTGTAACCAACGAGGCAGTACTGGTTCCAAGATTTGTGTCC 2182
||||| ||||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 1553 TTAGCAACTTCAAAGACCGTTGTAACCAACGAGACAATGCTGGTTCCAAGATTTGTGTCC 1612
Query 2183 TCAGTCAATCTTACTACAAGCAGCTCTGAGTCCACAGGGTCGTAGTAGGCTCT 2235
|||||||||||| | | | ||||||||||||||||| | |||||||||||
Sbjct 1613 TCAGTCAATCTTGC-A-A-GCAGCTCTGAGTCCACAAA--C-TAGTAGGCTCT 1659
> Ahg329973 jgi|Araly1|329973|fgenesh1_pm.C_scaffold_7002200
Length=2847
Score = 1288 bits (697), Expect = 0.0
Identities = 1116/1316 (85%), Gaps = 37/1316 (3%)
Strand=Plus/Plus
Query 877 TGGGGTTTATGAGGCTTTGCCTAGCTTTAGAGATGTTCCTATATCGGAGAAACCGAATCT 936
|||||||||||| || ||||| | |||||| |||||||||| ||||||||||| |||||
Sbjct 1506 TGGGGTTTATGAAGCATTGCCAAACTTTAGGGATGTTCCTAGCTCGGAGAAACCTAATCT 1565
Query 937 CTTTATCGGGAAGTTGAGTATGTGCTGTGTTGTTTTTGACTTTAGTGATCCGTCTAAGAA 996
|||||| |||||||||| |||| || ||||| || ||||||||||||||||| |||||
Sbjct 1566 GTTTATCAAGAAGTTGAGTTTGTGTTGCGTTGTGTTCGACTTTAGTGATCCGTCCAAGAA 1625
Query 997 CCTTAAG-GAGAAAGAGATTAAGAGGCAGACATTGCTTGAGCTTGTTGATTATGTTGCAT 1055
| | || ||||||||||| ||||| ||||| ||||| ||||||||||||||| |||||
Sbjct 1626 TC-TGAGAGAGAAAGAGATAAAGAGACAGACTTTGCTGGAGCTTGTTGATTATATTGCAA 1684
Query 1056 CAGTTGGTTTTAAGTTTAACGATGTTTCGATGCAAGAG-TTAACG-AAGATGG-TAGCGG 1112
| ||| | ||||| | |||| | ||||||||||| || || ||| ||| | | ||
Sbjct 1685 CGGTTTCTACAAAGTTGAGTGATGCTGCGATGCAAGAGATT-GCGAAAG-TGGCT-GTGG 1741
Query 1113 TTAATCTGTTT-AGAACTTTTCCTTCTGCGAATCACGAGAGTAAAATTCTTGAAATACAT 1171
||||||| ||| || || |||||| |||||||||||||||||||||||||||||| | |
Sbjct 1742 TTAATCT-TTTCAGGACGTTTCCTACTGCGAATCACGAGAGTAAAATTCTTGAAACGCTT 1800
Query 1172 GATATGGATGATGAAGAACCTTCTTTGGAGCCAGCTTGGCCTCATGTTCAAGTTGTGTAT 1231
||| |||||||||| |||||| |||| ||||| |||||||||||| |||||||||| |||
Sbjct 1801 GATGTGGATGATGAGGAACCTGCTTTAGAGCCGGCTTGGCCTCATCTTCAAGTTGTTTAT 1860
Query 1232 GAGATTCTTCTCAGATTCGTGGCTTCTCCCATGACTGATGCAAAGCTTGCCAAGAGATAT 1291
||| ||||||||||||| ||||| || || ||||||||||| |||||||| |||||||||
Sbjct 1861 GAGCTTCTTCTCAGATTTGTGGCCTCGCCTATGACTGATGCGAAGCTTGCAAAGAGATAT 1920
Query 1292 ATTGACCATTCTTTTGTCTTGAAGCTCTTAGACTTGTTTGATTCTGAAGATCAAAGAGAG 1351
|| ||||||||||| |||||||||||||| || |||||||| |||||||| |||||||||
Sbjct 1921 ATCGACCATTCTTTCGTCTTGAAGCTCTTGGATTTGTTTGACTCTGAAGACCAAAGAGAG 1980
Query 1352 AGGGAATATCTAAAAACTATTCTGCATCGGGTGTACGGGAAGTTCATGGTGCATCGACC- 1410
|||||||||||||| || |||||||||||| | |||||||| ||||||||||| |||||
Sbjct 1981 AGGGAATATCTAAAGACCATTCTGCATCGGATATACGGGAAATTCATGGTGCACCGACCC 2040
Query 1411 TTACATCAGAAAGGCGATAAACAATATCTTCTACAGATTCATATCCGAGACTGAAAAGCA 1470
|| ||||||||||| || ||||||||||||||||||||||| | ||| |||||||||||
Sbjct 2041 TTT-ATCAGAAAGGCCATCAACAATATCTTCTACAGATTCATTTTCGAAACTGAAAAGCA 2099
Query 1471 TAATGGCATTGCGGAGTTGCTAGAGATTCTTGGAAGTATAATTAATGGTTTTGCTTTGCC 1530
|||||||||||| |||||||| |||||||| ||||||||||| || ||||| ||||||||
Sbjct 2100 TAATGGCATTGCAGAGTTGCTTGAGATTCTAGGAAGTATAATCAACGGTTTCGCTTTGCC 2159
Query 1531 TTTAAAAGAAGAGCACAAGCTCTTCCTTTTGCGAGCCTTGATTCCTCTCCACA-AGCCTA 1589
|||||||| ||||| ||||||||||| | || ||||||||||| ||||||| | ||||
Sbjct 2160 GTTAAAAGAGGAGCATAAGCTCTTCCTAATCCGGGCCTTGATTCCACTCCACAGA-CCTA 2218
Query 1590 AATGTTCATCAGTCTATCACCAACAGCTTTCGTATTGCATTGTTCAGTTTGTAGA-AAAG 1648
||||| |||| | |||||| |||||||| || |||||||||||||| |||||||| ||||
Sbjct 2219 AATGTGCATCTGCCTATCATCAACAGCTATCTTATTGCATTGTTCAATTTGTAGAGAAAG 2278
Query 1649 GACTTCAAGCTCGCTGATACCGTTATTAGAGGTCTTTTAAAATATTGGCCTGTGACTAAC 1708
|||| ||||| || |||||||| |||||||| ||| |||| ||||||||||||||||||
Sbjct 2279 -ACTTTAAGCTTGCCGATACCGTCATTAGAGGCCTTCTAAAGTATTGGCCTGTGACTAAC 2337
Query 1709 AGCTCAAAGGAAGTTATGTTTCTTGGAGAGTTAGAAGAAGTCTTGGAAGCAACTCAAGCC 1768
|| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 2338 AGTTCAAAGGAAGTTATGTTTCTTGGGGAGTTGGAAGAAGTTTTGGAAGCAACTCAAGCA 2397
Query 1769 GCTGAGTTTCAACGTTGTATGGTTCCATTATCCCGACAAATTGCTCGATGCCTCAACAGT 1828
||||||||||| || ||||||||||| |||| ||| ||||| || |||||||||||||||
Sbjct 2398 GCTGAGTTTCAGCGATGTATGGTTCCTTTATTCCGTCAAATCGCCCGATGCCTCAACAGT 2457
Query 1829 TCACATTTCCAGGTTGCTGAAAGAGCAT-TGTTTCTATGGAACAACGATCACATAAGAAA 1887
|||||||| ||||| |||||||| || | ||||||| |||||||||||||||||||||||
Sbjct 2458 TCACATTTTCAGGTGGCTGAAAGGGC-TCTGTTTCTGTGGAACAACGATCACATAAGAAA 2516
Query 1888 CCTGATCACTCAGAACCATAAAGTGATAATGCCTATAGTCTTCCCAGCTCTTGAGAGAAA 1947
|||||| ||||| |||||||||||||||||||| || || ||||| ||| | ||||||||
Sbjct 2517 CCTGATTACTCAAAACCATAAAGTGATAATGCCAATCGTGTTCCCGGCTATGGAGAGAAA 2576
Query 1948 CACGCGTGGACATTGGAACCAAGCAGTTCAAAGTCTGACTATAAACGTGAGGAAAG-TAT 2006
||| || || |||||||||||||||||||| ||||||||| | || ||||| |||| |||
Sbjct 2577 CACACGGGGCCATTGGAACCAAGCAGTTCAGAGTCTGACTTTGAATGTGAG-AAAGGTAT 2635
Query 2007 TATGC-GAGATTGACCAAGTTCT-TTTCGACGAGTGTTTAGCCAAATTCCAAGTAGAAGA 2064
| || |||| |||||| |||| ||| || || || |||||||| ||||||| ||| ||
Sbjct 2636 TG-GCAGAGACAGACCAAATTCTGTTT-GATGAATGCTTAGCCAAGTTCCAAGAAGATGA 2693
Query 2065 AGTGAAT-AAAACAGAGGTTAAAGCGAAACGGGAAAGGA-CATGGCAA-CGGTTAGAAGA 2121
|| ||| ||||| |||||| ||| ||||| ||| | | ||||| || | || |||||
Sbjct 2694 AGCAAATGAAAAC-GAGGTTGTAGCCAAACGAGAA-GCAACATGG-AAGCTTTTGGAAGA 2750
Query 2122 TTTAGCTA-CTTC-AAAGACCGTTGTAACCAACGAGGCAGTACTGGTTCCAAGATT 2175
|| || | |||| ||| |||| || |||||||||||| || || || |||||
Sbjct 2751 CTTGGC-AGCTTCCAAAT-CCGT---AAGCAACGAGGCAGTGCTCGTCCCCAGATT 2801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88064646440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5