BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21650.1 Length=2338 Score E Sequences producing significant alignments: (Bits) Value Ahg930127 jgi|Araly1|930127|scaffold_302584.1 2538 0.0 Ahg329973 jgi|Araly1|329973|fgenesh1_pm.C_scaffold_7002200 1288 0.0 > Ahg930127 jgi|Araly1|930127|scaffold_302584.1 Length=1671 Score = 2538 bits (1374), Expect = 0.0 Identities = 1576/1673 (94%), Gaps = 16/1673 (1%) Strand=Plus/Plus Query 565 GGGTTTGTGCCAATAGTTAGAAATGATCAAACAGATATTTGGGAAATTACCTAGAAAGCC 624 |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 1 GGGTTTGTGCCAATAGTTAGAAATGATCAAGCAGATATTTGGGAAATTACCTCGAAAGCC 60 Query 625 TTCCAAATCATTGCAGAATGACTCCAATGGTGAAGGAGGTGTTAATAATTCTTATTATGC 684 ||||||||| ||||||||||| || |||||||||||||||| | ||| ||||||||||| Sbjct 61 TTCCAAATCTTTGCAGAATGATTCTAATGGTGAAGGAGGTG-T--TAACTCTTATTATGC 117 Query 685 TTCGAATTCGAGTACTACTAGTATCTCTAAACCTTCTTCAACATCTTCGAAATCATCATC 744 |||||||||||||| || ||||||||| |||||||||||| ||||||| ||||||||||| Sbjct 118 TTCGAATTCGAGTAGTAGTAGTATCTCGAAACCTTCTTCAGCATCTTCCAAATCATCATC 177 Query 745 AGCCTCGGGTTCGCGTGTAGCTAATGGAACTCTTGCTCCTAACTCAATGAGCTCTAATAG 804 |||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | | Sbjct 178 AGCCTCGGGTTCACGTGTAGCTAATGGAACTCTTGCTCCTAACTCATTGAGCTCT-A-A- 234 Query 805 GAATACTAATCAAGGGAAGAAACCATTGGGAGGAGATGCTGTTGTACAAGCTGGACCG-T 863 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 235 CAAGACTAATCAAGGGAAGAAACCATTGGGAGGAGATGCTGTTGTACAAGCTGGACCGTT 294 Query 864 TTCCGTCTTCTGGTGGGGTTTATGAGGCTTTGCCTAGCTTTAGAGATGTTCCTATATCGG 923 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 295 TTCC-CCTTCTGGTGGGGTTTATGAGGCTTTGCCTAGCTTTAGAGATGTTCCTATCTCGG 353 Query 924 AGAAACCGAATCTCTTTATCGGGAAGTTGAGTATGTGCTGTGTTGTTTTTGACTTTAGTG 983 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 354 AGAAACCGAATCTCTTTATCGGGAAGTTGAGTATGTGCTGTGTTGTCTTTGACTTTAGTG 413 Query 984 ATCCGTCTAAGAACCTTAAGGAGAAAGAGATTAAGAGGCAGACATTGCTTGAGCTTGTTG 1043 |||| || |||||||| || ||||||||||||||| ||||||||||||||||||| |||| Sbjct 414 ATCCATCGAAGAACCTAAAAGAGAAAGAGATTAAGCGGCAGACATTGCTTGAGCTCGTTG 473 Query 1044 ATTATGTTGCATCAGTTGGTTTTAAGTTTAACGATGTTTCGATGCAAGAGTTAACGAAGA 1103 |||||||||||||||||||| | |||||||| |||||| ||||||||||| | || |||| Sbjct 474 ATTATGTTGCATCAGTTGGTGTGAAGTTTAATGATGTTGCGATGCAAGAGCTCACAAAGA 533 Query 1104 TGGTAGCGGTTAATCTGTTTAGAACTTTTCCTTCTGCGAATCACGAGAGTAAAATTCTTG 1163 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 534 TGGTAGCGATTAATCTGTTTAGAACGTTTCCTTCTGCGAATCACGAGAGTAAAATTCTTG 593 Query 1164 AAATACATGATATGGATGATGAAGAACCTTCTTTGGAGCCAGCTTGGCCTCATGTTCAAG 1223 |||| ||||||||||||||||| |||||||| ||||||||||||||||||||| |||||| Sbjct 594 AAATGCATGATATGGATGATGAGGAACCTTCGTTGGAGCCAGCTTGGCCTCATATTCAAG 653 Query 1224 TTGTGTATGAGATTCTT-CTCAGATTCGTGGCTTCTCCCATGACTGATGCAAAGCTTGCC 1282 |||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| Sbjct 654 TTGTGTATGAGATT-TTGCTCAGATTCGTGGCTTCTCCCATGACTGACGCAAAGCTTGCA 712 Query 1283 AAGAGATATATTGACCATTCTTTTGTCTTGAAGCTCTTAGACTTGTTTGATTCTGAAGAT 1342 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 713 AAGAGATATATTGACCATTCCTTTGTCTTGAAGCTGTTAGACTTGTTTGATTCTGAAGAT 772 Query 1343 CAAAGAGAGAGGGAATATCTAAAAACTATTCTGCATCGGGTGTACGGGAAGTTCATGGTG 1402 |||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||| Sbjct 773 CAAAGAGAGAGGGAATATTTGAAAACTATTCTGCATCGGGTCTACGGGAAGTTCATGGTG 832 Query 1403 CATCGACCTTACATCAGAAAGGCGATAAACAATATCTTCTACAGATTCATATCCGAGACT 1462 |||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 833 CATCGACCCTATATCAGAAAGGCGATAAACAATATCTTCTACAGATTCATTTCCGAGACT 892 Query 1463 GAAAAGCATAATGGCATTGCGGAGTTGCTAGAGATTCTTGGAAGTATAATTAATGGTTTT 1522 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 893 GAAAAGCATAATGGCATTGCAGAGTTGCTAGAGATTCTTGGAAGTATAATTAATGGGTTT 952 Query 1523 GCTTTGCCTTTAAAAGAAGAGCACAAGCTCTTCCTTTTGCGAGCCTTGATTCCTCTCCAC 1582 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 953 GCTTTGCCTTTAAAAGAAGAGCACAAGCTCTTCCTTTTGCGAGCCTTGATTCCTCTCCAC 1012 Query 1583 AAGCCTAAATGTTCATCAGTCTATCACCAACAGCTTTCGTATTGCATTGTTCAGTTTGTA 1642 ||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 1013 AAGCCTAAATGTTCATCGGTCTATTTCCAACAGCTTTCGTATTGCATAGTTCAGTTTGTA 1072 Query 1643 GAAAAGGACTTCAAGCTCGCTGATACCGTTATTAGAGGTCTTTTAAAATATTGGCCTGTG 1702 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1073 GAAAAGGACTTCAAGCTCGCTGATACCGTTATTAGAGGCCTTTTAAAATATTGGCCTGTG 1132 Query 1703 ACTAACAGCTCAAAGGAAGTTATGTTTCTTGGAGAGTTAGAAGAAGTCTTGGAAGCAACT 1762 |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 1133 ACTAACAGCTCAAAGGAAGTAATGTTTCTTGGAGAGTTAGAAGAAGTCTTGGAGGCAACG 1192 Query 1763 CAAGCCGCTGAGTTTCAACGTTGTATGGTTCCATTATCCCGACAAATTGCTCGATGCCTC 1822 ||||||||||||||||| || |||||||| || ||||||||||||||||||||||||||| Sbjct 1193 CAAGCCGCTGAGTTTCAGCGCTGTATGGTCCCTTTATCCCGACAAATTGCTCGATGCCTC 1252 Query 1823 AACAGTTCACATTTCCAGGTTGCTGAAAGAGCATTGTTTCTATGGAACAACGATCACATA 1882 ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1253 AACAGTTTGCATTTTCAGGTTGCTGAAAGAGCATTGTTTCTATGGAACAACGATCATATA 1312 Query 1883 AGAAACCTGATCACTCAGAACCATAAAGTGATAATGCCTATAGTCTTCCCAGCTCTTGAG 1942 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 1313 AGAAACCTGATCACTCAGAACCATAAAGTAATAATGCCTATAGTCTTCCCAGCTCTCGAG 1372 Query 1943 AGAAACACGCGTGGACATTGGAACCAAGCAGTTCAAAGTCTGACTATAAACGTGAGGAAA 2002 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1373 AGAAACACGCGAGGACACTGGAACCAAGCAGTTCAAAGTCTGACTATAAACGTGAGGAAA 1432 Query 2003 GTATTATGCGAGATTGACCAAGTTCTTTTCGACGAGTGTTTAGCCAAATTCCAAGTAGAA 2062 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1433 GTATTCTGCGACATTGACCAAGTTCTTTTCGACGAGTGTTTAGCCAAATTCCAAGTAGAA 1492 Query 2063 GAAGTGAATAAAACAGAGGTTAAAGCGAAACGGGAAAGGACATGGCAACGGTTAGAAGAT 2122 |||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 1493 GAAGAGAATAAAACAGAGGTTAAAGCGAAACGGGAAAGAACATGGCAGCGGTTAGAAGAT 1552 Query 2123 TTAGCTACTTCAAAGACCGTTGTAACCAACGAGGCAGTACTGGTTCCAAGATTTGTGTCC 2182 ||||| ||||||||||||||||||||||||||| || | ||||||||||||||||||||| Sbjct 1553 TTAGCAACTTCAAAGACCGTTGTAACCAACGAGACAATGCTGGTTCCAAGATTTGTGTCC 1612 Query 2183 TCAGTCAATCTTACTACAAGCAGCTCTGAGTCCACAGGGTCGTAGTAGGCTCT 2235 |||||||||||| | | | ||||||||||||||||| | ||||||||||| Sbjct 1613 TCAGTCAATCTTGC-A-A-GCAGCTCTGAGTCCACAAA--C-TAGTAGGCTCT 1659 > Ahg329973 jgi|Araly1|329973|fgenesh1_pm.C_scaffold_7002200 Length=2847 Score = 1288 bits (697), Expect = 0.0 Identities = 1116/1316 (85%), Gaps = 37/1316 (3%) Strand=Plus/Plus Query 877 TGGGGTTTATGAGGCTTTGCCTAGCTTTAGAGATGTTCCTATATCGGAGAAACCGAATCT 936 |||||||||||| || ||||| | |||||| |||||||||| ||||||||||| ||||| Sbjct 1506 TGGGGTTTATGAAGCATTGCCAAACTTTAGGGATGTTCCTAGCTCGGAGAAACCTAATCT 1565 Query 937 CTTTATCGGGAAGTTGAGTATGTGCTGTGTTGTTTTTGACTTTAGTGATCCGTCTAAGAA 996 |||||| |||||||||| |||| || ||||| || ||||||||||||||||| ||||| Sbjct 1566 GTTTATCAAGAAGTTGAGTTTGTGTTGCGTTGTGTTCGACTTTAGTGATCCGTCCAAGAA 1625 Query 997 CCTTAAG-GAGAAAGAGATTAAGAGGCAGACATTGCTTGAGCTTGTTGATTATGTTGCAT 1055 | | || ||||||||||| ||||| ||||| ||||| ||||||||||||||| ||||| Sbjct 1626 TC-TGAGAGAGAAAGAGATAAAGAGACAGACTTTGCTGGAGCTTGTTGATTATATTGCAA 1684 Query 1056 CAGTTGGTTTTAAGTTTAACGATGTTTCGATGCAAGAG-TTAACG-AAGATGG-TAGCGG 1112 | ||| | ||||| | |||| | ||||||||||| || || ||| ||| | | || Sbjct 1685 CGGTTTCTACAAAGTTGAGTGATGCTGCGATGCAAGAGATT-GCGAAAG-TGGCT-GTGG 1741 Query 1113 TTAATCTGTTT-AGAACTTTTCCTTCTGCGAATCACGAGAGTAAAATTCTTGAAATACAT 1171 ||||||| ||| || || |||||| |||||||||||||||||||||||||||||| | | Sbjct 1742 TTAATCT-TTTCAGGACGTTTCCTACTGCGAATCACGAGAGTAAAATTCTTGAAACGCTT 1800 Query 1172 GATATGGATGATGAAGAACCTTCTTTGGAGCCAGCTTGGCCTCATGTTCAAGTTGTGTAT 1231 ||| |||||||||| |||||| |||| ||||| |||||||||||| |||||||||| ||| Sbjct 1801 GATGTGGATGATGAGGAACCTGCTTTAGAGCCGGCTTGGCCTCATCTTCAAGTTGTTTAT 1860 Query 1232 GAGATTCTTCTCAGATTCGTGGCTTCTCCCATGACTGATGCAAAGCTTGCCAAGAGATAT 1291 ||| ||||||||||||| ||||| || || ||||||||||| |||||||| ||||||||| Sbjct 1861 GAGCTTCTTCTCAGATTTGTGGCCTCGCCTATGACTGATGCGAAGCTTGCAAAGAGATAT 1920 Query 1292 ATTGACCATTCTTTTGTCTTGAAGCTCTTAGACTTGTTTGATTCTGAAGATCAAAGAGAG 1351 || ||||||||||| |||||||||||||| || |||||||| |||||||| ||||||||| Sbjct 1921 ATCGACCATTCTTTCGTCTTGAAGCTCTTGGATTTGTTTGACTCTGAAGACCAAAGAGAG 1980 Query 1352 AGGGAATATCTAAAAACTATTCTGCATCGGGTGTACGGGAAGTTCATGGTGCATCGACC- 1410 |||||||||||||| || |||||||||||| | |||||||| ||||||||||| ||||| Sbjct 1981 AGGGAATATCTAAAGACCATTCTGCATCGGATATACGGGAAATTCATGGTGCACCGACCC 2040 Query 1411 TTACATCAGAAAGGCGATAAACAATATCTTCTACAGATTCATATCCGAGACTGAAAAGCA 1470 || ||||||||||| || ||||||||||||||||||||||| | ||| ||||||||||| Sbjct 2041 TTT-ATCAGAAAGGCCATCAACAATATCTTCTACAGATTCATTTTCGAAACTGAAAAGCA 2099 Query 1471 TAATGGCATTGCGGAGTTGCTAGAGATTCTTGGAAGTATAATTAATGGTTTTGCTTTGCC 1530 |||||||||||| |||||||| |||||||| ||||||||||| || ||||| |||||||| Sbjct 2100 TAATGGCATTGCAGAGTTGCTTGAGATTCTAGGAAGTATAATCAACGGTTTCGCTTTGCC 2159 Query 1531 TTTAAAAGAAGAGCACAAGCTCTTCCTTTTGCGAGCCTTGATTCCTCTCCACA-AGCCTA 1589 |||||||| ||||| ||||||||||| | || ||||||||||| ||||||| | |||| Sbjct 2160 GTTAAAAGAGGAGCATAAGCTCTTCCTAATCCGGGCCTTGATTCCACTCCACAGA-CCTA 2218 Query 1590 AATGTTCATCAGTCTATCACCAACAGCTTTCGTATTGCATTGTTCAGTTTGTAGA-AAAG 1648 ||||| |||| | |||||| |||||||| || |||||||||||||| |||||||| |||| Sbjct 2219 AATGTGCATCTGCCTATCATCAACAGCTATCTTATTGCATTGTTCAATTTGTAGAGAAAG 2278 Query 1649 GACTTCAAGCTCGCTGATACCGTTATTAGAGGTCTTTTAAAATATTGGCCTGTGACTAAC 1708 |||| ||||| || |||||||| |||||||| ||| |||| |||||||||||||||||| Sbjct 2279 -ACTTTAAGCTTGCCGATACCGTCATTAGAGGCCTTCTAAAGTATTGGCCTGTGACTAAC 2337 Query 1709 AGCTCAAAGGAAGTTATGTTTCTTGGAGAGTTAGAAGAAGTCTTGGAAGCAACTCAAGCC 1768 || ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| Sbjct 2338 AGTTCAAAGGAAGTTATGTTTCTTGGGGAGTTGGAAGAAGTTTTGGAAGCAACTCAAGCA 2397 Query 1769 GCTGAGTTTCAACGTTGTATGGTTCCATTATCCCGACAAATTGCTCGATGCCTCAACAGT 1828 ||||||||||| || ||||||||||| |||| ||| ||||| || ||||||||||||||| Sbjct 2398 GCTGAGTTTCAGCGATGTATGGTTCCTTTATTCCGTCAAATCGCCCGATGCCTCAACAGT 2457 Query 1829 TCACATTTCCAGGTTGCTGAAAGAGCAT-TGTTTCTATGGAACAACGATCACATAAGAAA 1887 |||||||| ||||| |||||||| || | ||||||| ||||||||||||||||||||||| Sbjct 2458 TCACATTTTCAGGTGGCTGAAAGGGC-TCTGTTTCTGTGGAACAACGATCACATAAGAAA 2516 Query 1888 CCTGATCACTCAGAACCATAAAGTGATAATGCCTATAGTCTTCCCAGCTCTTGAGAGAAA 1947 |||||| ||||| |||||||||||||||||||| || || ||||| ||| | |||||||| Sbjct 2517 CCTGATTACTCAAAACCATAAAGTGATAATGCCAATCGTGTTCCCGGCTATGGAGAGAAA 2576 Query 1948 CACGCGTGGACATTGGAACCAAGCAGTTCAAAGTCTGACTATAAACGTGAGGAAAG-TAT 2006 ||| || || |||||||||||||||||||| ||||||||| | || ||||| |||| ||| Sbjct 2577 CACACGGGGCCATTGGAACCAAGCAGTTCAGAGTCTGACTTTGAATGTGAG-AAAGGTAT 2635 Query 2007 TATGC-GAGATTGACCAAGTTCT-TTTCGACGAGTGTTTAGCCAAATTCCAAGTAGAAGA 2064 | || |||| |||||| |||| ||| || || || |||||||| ||||||| ||| || Sbjct 2636 TG-GCAGAGACAGACCAAATTCTGTTT-GATGAATGCTTAGCCAAGTTCCAAGAAGATGA 2693 Query 2065 AGTGAAT-AAAACAGAGGTTAAAGCGAAACGGGAAAGGA-CATGGCAA-CGGTTAGAAGA 2121 || ||| ||||| |||||| ||| ||||| ||| | | ||||| || | || ||||| Sbjct 2694 AGCAAATGAAAAC-GAGGTTGTAGCCAAACGAGAA-GCAACATGG-AAGCTTTTGGAAGA 2750 Query 2122 TTTAGCTA-CTTC-AAAGACCGTTGTAACCAACGAGGCAGTACTGGTTCCAAGATT 2175 || || | |||| ||| |||| || |||||||||||| || || || ||||| Sbjct 2751 CTTGGC-AGCTTCCAAAT-CCGT---AAGCAACGAGGCAGTGCTCGTCCCCAGATT 2801 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88064646440 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5