BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21660.1 Length=1308 Score E Sequences producing significant alignments: (Bits) Value Ahg342316 jgi|Araly1|342316|fgenesh1_pg.C_scaffold_3002079 555 4e-157 > Ahg342316 jgi|Araly1|342316|fgenesh1_pg.C_scaffold_3002079 Length=1527 Score = 555 bits (300), Expect = 4e-157 Identities = 415/467 (89%), Gaps = 22/467 (5%) Strand=Plus/Plus Query 225 AAAACGTGCAGCAGCTAATCCATTTTCTAGGC--A-GAATAAACGCCGTCAAGGCGCTGG 281 ||||||||||||||||||||||||||| |||| | || ||||||||||||||||| ||| Sbjct 360 AAAACGTGCAGCAGCTAATCCATTTTCGAGGCATACGATTAAACGCCGTCAAGGCGATGG 419 Query 282 GAATGTCCGTATCGATGATTTCTCCGGCGGAACTGGAAGCGATTCCGATGAAGCGGTGGA 341 |||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| Sbjct 420 AAATGTCCGTATCGATGATTTCTCCGGTGGAACTGGTAGCGATTCCGATGAAGCTCTGGA 479 Query 342 GCACTACGGCGGAGAAGAGAATAGAGCTATAGAAAGACCTGAGCAATCATCAAGATCAAT 401 | | |||||||||||||| |||||||||||||||||| |||||| | ||| ||| | Sbjct 480 GAATTACGGCGGAGAAGATAATAGAGCTATAGAAAGAACTGAGC-A--ATC---ATC--T 531 Query 402 GTCTGAAGAAACTGTTTCATCTGAGCTTGAAGAAGAGCCTCAAAAAGTGTTTACGCACAC 461 | | |||||||| |||| |||||||||||||||||| | || ||| |||||| |||| Sbjct 532 G---G-AGAAACTGATTCACCTGAGCTTGAAGAAGAGCTTGAAGGAGTCTTTACGTACAC 587 Query 462 TGTAACAAGCTGGAGCAACGGTTTCACTGTCGATGATAGCTCGTTAAAGACGTTGGATGA 521 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 588 TGTAACAAGCTGGAGCAACGGTTTCACTGTCGATGATAGTTCGTTAAAGACGTTGGATGA 647 Query 522 CCCGGAAAATGCA-ACCTTTCTTGAGATCATATC-AAGTATGGAGTCCCCACGTGAACTC 579 |||||||||||| | ||||| ||||||||||| ||| ||||||||||| ||||||||| Sbjct 648 TCCGGAAAATGCATAT-TTTCTGGAGATCATATCGAAG-ATGGAGTCCCCGCGTGAACTC 705 Query 580 GGTCAAGTCCGTGTTCAAGTCAAAATCATTAGCCGTGAAGAAGAAAACTACACTGAATCA 639 | |||||||||||||||||||||||||||||| |||||||||||||||| ||||||| || Sbjct 706 GCTCAAGTCCGTGTTCAAGTCAAAATCATTAGGCGTGAAGAAGAAAACTTCACTGAAGCA 765 Query 640 CAAGCCGGATCAGACTCTGCCTCAACTAAGCCACCACCAGCTTTAGC 686 ||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 766 CAAGCCGGATCAGACTCTGCCTCAACTGAGCCACCA---GCTTTAGC 809 Score = 394 bits (213), Expect = 9e-109 Identities = 262/284 (92%), Gaps = 10/284 (4%) Strand=Plus/Plus Query 691 AGAGCTAAGGAGTCAGCTATAGAAAGATCTGAGCAATCATCAAAGGTATTGTCTGGAGAA 750 |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 877 AGAGCTAAGGAGTCAGCTATAGAAAGATTTGAGCAATCATCAAAGGTAATGTCTGGAGAA 936 Query 751 ACTGATTCAGCTGAGCTTCAAGAACAACAGCAAGAAGACCAGCCATATGAAGTAGTCACG 810 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 937 ACTGATTCAGCTGAGCTTCAAGAACAACAGCAAGAAGACCAGCCATATAAAGTAGTCACG 996 Query 811 TACACTGTAACTATTTGGAGGAACGGTTTCACTGTCGATGATGATCCGTTTAAGAGTTTG 870 | ||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||| Sbjct 997 TCCACTGTAACTATTTGGAGGAATGGTTTTACTATCGATGATGATCCGTTTAAGAGTTTG 1056 Query 871 GATGATCCAGAAAATGCAGCTTTTCTCGAGTATATGCCAGAGGATAACAAGTTTGGAGTC 930 ||||| || ||||||||||| ||||| | | |||||||||||||||||||||| Sbjct 1057 GATGACCCGGAAAATGCAGCCTTTCT----T----G--AGAGGATAACAAGTTTGGAGTC 1106 Query 931 CCCACGACTACTCGATCCACTTCGTGTTCAAGTCAAACTCATCA 974 |||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 1107 CCCACGACTACTTGATCCACTTAGTGTTCAAGTCAAACTCATCA 1150 Score = 387 bits (209), Expect = 1e-106 Identities = 291/330 (88%), Gaps = 7/330 (2%) Strand=Plus/Plus Query 984 AACTCTAGCCGGATCAGAGTCTACCTCTACTGAGCCACC-A-TTGA-CGA-CTACACAAC 1039 ||||||||||| |||||| ||| |||||| |||| ||| | || | | | || ||| | Sbjct 1200 AACTCTAGCCGAATCAGACTCTGTCTCTACCGAGCTACCAACTTTAGCCACCT-CACCGC 1258 Query 1040 CACCATCCATGAGCTCATTAGTGGTGGATCCTGCAGCGCCAACAACCTCGATCCAGCTTA 1099 ||||||| ||| ||| | ||||||| |||||| ||||||||||||||||||| ||||| | Sbjct 1259 CACCATCAATGGGCTTAATAGTGGTAGATCCTACAGCGCCAACAACCTCGATTCAGCTCA 1318 Query 1100 TATTAGCAGACAGCACACGCATTGTCACCCAG-TTCAATACTCACCACACCATTAGAGAC 1158 |||||||||| |||||||| | ||||||| | ||||| ||||||||||||||||||||| Sbjct 1319 GATTAGCAGACGGCACACGCCTAGTCACCC-GTTTCAACACTCACCACACCATTAGAGAC 1377 Query 1159 ATTCGATGCTTCATAGACACGTCTAGACCAGATGGCTCCAAAGACTACCAATTACTCATC 1218 |||||| ||||||||||| ||||||||||||| ||||||||||||||| ||||||||||| Sbjct 1378 ATTCGAGGCTTCATAGACGCGTCTAGACCAGACGGCTCCAAAGACTACGAATTACTCATC 1437 Query 1219 ATGGGGTCTCCTCCTACACCACTGTCGGACTTTGACCAAACCATCGAGAAGGCTGGCATC 1278 ||||||||||||||||||| |||| | ||||||||||||||||| ||||| ||||||||| Sbjct 1438 ATGGGGTCTCCTCCTACACGACTGCCTGACTTTGACCAAACCATAGAGAAAGCTGGCATC 1497 Query 1279 GCCAACTCTGTCCTCGTCCAAAAATTCTAG 1308 |||||||||||||||||||||||||||||| Sbjct 1498 GCCAACTCTGTCCTCGTCCAAAAATTCTAG 1527 Score = 207 bits (112), Expect = 1e-52 Identities = 154/174 (89%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 53 CCGACGCCGCCAAGCCAAATGTTCCAAACCCTAACGACG---AACTTCTCCGGCGTAATC 109 ||| ||||||| |||||||||||||||||||||| |||| |||||||||| |||||| Sbjct 152 CCGTCGCCGCCGAGCCAAATGTTCCAAACCCTAAAGACGAACAACTTCTCCGACGTAATA 211 Query 110 CAAGTTCGTTTCCAAATCTACGAATCAAAATCCCTACTTCATCTTTTTCTACGTTTGATG 169 |||| ||||||| ||||| ||| || ||||||| ||||||||||||| ||||||||| Sbjct 212 GAAGTCCGTTTCCGAATCTTCGAGTCCGTATCCCTAATTCATCTTTTTCTGCGTTTGATG 271 Query 170 GCTCTTCCGGTTACTCTCCGTCGCGGTTACAGTTACGACCACCGTGGCCGTCGT 223 ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 272 GCTCTTCCGGTTACTCTCCGTCGCGGTTACAGTTACGACCACCGTTTCCGTCGT 325 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48911702511 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5