BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21660.1
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342316 jgi|Araly1|342316|fgenesh1_pg.C_scaffold_3002079 555 4e-157
> Ahg342316 jgi|Araly1|342316|fgenesh1_pg.C_scaffold_3002079
Length=1527
Score = 555 bits (300), Expect = 4e-157
Identities = 415/467 (89%), Gaps = 22/467 (5%)
Strand=Plus/Plus
Query 225 AAAACGTGCAGCAGCTAATCCATTTTCTAGGC--A-GAATAAACGCCGTCAAGGCGCTGG 281
||||||||||||||||||||||||||| |||| | || ||||||||||||||||| |||
Sbjct 360 AAAACGTGCAGCAGCTAATCCATTTTCGAGGCATACGATTAAACGCCGTCAAGGCGATGG 419
Query 282 GAATGTCCGTATCGATGATTTCTCCGGCGGAACTGGAAGCGATTCCGATGAAGCGGTGGA 341
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 420 AAATGTCCGTATCGATGATTTCTCCGGTGGAACTGGTAGCGATTCCGATGAAGCTCTGGA 479
Query 342 GCACTACGGCGGAGAAGAGAATAGAGCTATAGAAAGACCTGAGCAATCATCAAGATCAAT 401
| | |||||||||||||| |||||||||||||||||| |||||| | ||| ||| |
Sbjct 480 GAATTACGGCGGAGAAGATAATAGAGCTATAGAAAGAACTGAGC-A--ATC---ATC--T 531
Query 402 GTCTGAAGAAACTGTTTCATCTGAGCTTGAAGAAGAGCCTCAAAAAGTGTTTACGCACAC 461
| | |||||||| |||| |||||||||||||||||| | || ||| |||||| ||||
Sbjct 532 G---G-AGAAACTGATTCACCTGAGCTTGAAGAAGAGCTTGAAGGAGTCTTTACGTACAC 587
Query 462 TGTAACAAGCTGGAGCAACGGTTTCACTGTCGATGATAGCTCGTTAAAGACGTTGGATGA 521
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 588 TGTAACAAGCTGGAGCAACGGTTTCACTGTCGATGATAGTTCGTTAAAGACGTTGGATGA 647
Query 522 CCCGGAAAATGCA-ACCTTTCTTGAGATCATATC-AAGTATGGAGTCCCCACGTGAACTC 579
|||||||||||| | ||||| ||||||||||| ||| ||||||||||| |||||||||
Sbjct 648 TCCGGAAAATGCATAT-TTTCTGGAGATCATATCGAAG-ATGGAGTCCCCGCGTGAACTC 705
Query 580 GGTCAAGTCCGTGTTCAAGTCAAAATCATTAGCCGTGAAGAAGAAAACTACACTGAATCA 639
| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||
Sbjct 706 GCTCAAGTCCGTGTTCAAGTCAAAATCATTAGGCGTGAAGAAGAAAACTTCACTGAAGCA 765
Query 640 CAAGCCGGATCAGACTCTGCCTCAACTAAGCCACCACCAGCTTTAGC 686
||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 766 CAAGCCGGATCAGACTCTGCCTCAACTGAGCCACCA---GCTTTAGC 809
Score = 394 bits (213), Expect = 9e-109
Identities = 262/284 (92%), Gaps = 10/284 (4%)
Strand=Plus/Plus
Query 691 AGAGCTAAGGAGTCAGCTATAGAAAGATCTGAGCAATCATCAAAGGTATTGTCTGGAGAA 750
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 877 AGAGCTAAGGAGTCAGCTATAGAAAGATTTGAGCAATCATCAAAGGTAATGTCTGGAGAA 936
Query 751 ACTGATTCAGCTGAGCTTCAAGAACAACAGCAAGAAGACCAGCCATATGAAGTAGTCACG 810
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 937 ACTGATTCAGCTGAGCTTCAAGAACAACAGCAAGAAGACCAGCCATATAAAGTAGTCACG 996
Query 811 TACACTGTAACTATTTGGAGGAACGGTTTCACTGTCGATGATGATCCGTTTAAGAGTTTG 870
| ||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct 997 TCCACTGTAACTATTTGGAGGAATGGTTTTACTATCGATGATGATCCGTTTAAGAGTTTG 1056
Query 871 GATGATCCAGAAAATGCAGCTTTTCTCGAGTATATGCCAGAGGATAACAAGTTTGGAGTC 930
||||| || ||||||||||| ||||| | | ||||||||||||||||||||||
Sbjct 1057 GATGACCCGGAAAATGCAGCCTTTCT----T----G--AGAGGATAACAAGTTTGGAGTC 1106
Query 931 CCCACGACTACTCGATCCACTTCGTGTTCAAGTCAAACTCATCA 974
|||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1107 CCCACGACTACTTGATCCACTTAGTGTTCAAGTCAAACTCATCA 1150
Score = 387 bits (209), Expect = 1e-106
Identities = 291/330 (88%), Gaps = 7/330 (2%)
Strand=Plus/Plus
Query 984 AACTCTAGCCGGATCAGAGTCTACCTCTACTGAGCCACC-A-TTGA-CGA-CTACACAAC 1039
||||||||||| |||||| ||| |||||| |||| ||| | || | | | || ||| |
Sbjct 1200 AACTCTAGCCGAATCAGACTCTGTCTCTACCGAGCTACCAACTTTAGCCACCT-CACCGC 1258
Query 1040 CACCATCCATGAGCTCATTAGTGGTGGATCCTGCAGCGCCAACAACCTCGATCCAGCTTA 1099
||||||| ||| ||| | ||||||| |||||| ||||||||||||||||||| ||||| |
Sbjct 1259 CACCATCAATGGGCTTAATAGTGGTAGATCCTACAGCGCCAACAACCTCGATTCAGCTCA 1318
Query 1100 TATTAGCAGACAGCACACGCATTGTCACCCAG-TTCAATACTCACCACACCATTAGAGAC 1158
|||||||||| |||||||| | ||||||| | ||||| |||||||||||||||||||||
Sbjct 1319 GATTAGCAGACGGCACACGCCTAGTCACCC-GTTTCAACACTCACCACACCATTAGAGAC 1377
Query 1159 ATTCGATGCTTCATAGACACGTCTAGACCAGATGGCTCCAAAGACTACCAATTACTCATC 1218
|||||| ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1378 ATTCGAGGCTTCATAGACGCGTCTAGACCAGACGGCTCCAAAGACTACGAATTACTCATC 1437
Query 1219 ATGGGGTCTCCTCCTACACCACTGTCGGACTTTGACCAAACCATCGAGAAGGCTGGCATC 1278
||||||||||||||||||| |||| | ||||||||||||||||| ||||| |||||||||
Sbjct 1438 ATGGGGTCTCCTCCTACACGACTGCCTGACTTTGACCAAACCATAGAGAAAGCTGGCATC 1497
Query 1279 GCCAACTCTGTCCTCGTCCAAAAATTCTAG 1308
||||||||||||||||||||||||||||||
Sbjct 1498 GCCAACTCTGTCCTCGTCCAAAAATTCTAG 1527
Score = 207 bits (112), Expect = 1e-52
Identities = 154/174 (89%), Gaps = 3/174 (2%)
Strand=Plus/Plus
Query 53 CCGACGCCGCCAAGCCAAATGTTCCAAACCCTAACGACG---AACTTCTCCGGCGTAATC 109
||| ||||||| |||||||||||||||||||||| |||| |||||||||| ||||||
Sbjct 152 CCGTCGCCGCCGAGCCAAATGTTCCAAACCCTAAAGACGAACAACTTCTCCGACGTAATA 211
Query 110 CAAGTTCGTTTCCAAATCTACGAATCAAAATCCCTACTTCATCTTTTTCTACGTTTGATG 169
|||| ||||||| ||||| ||| || ||||||| ||||||||||||| |||||||||
Sbjct 212 GAAGTCCGTTTCCGAATCTTCGAGTCCGTATCCCTAATTCATCTTTTTCTGCGTTTGATG 271
Query 170 GCTCTTCCGGTTACTCTCCGTCGCGGTTACAGTTACGACCACCGTGGCCGTCGT 223
||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 272 GCTCTTCCGGTTACTCTCCGTCGCGGTTACAGTTACGACCACCGTTTCCGTCGT 325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48911702511
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5