BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21670.1
Length=2155
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930129 jgi|Araly1|930129|scaffold_302586.1 2870 0.0
> Ahg930129 jgi|Araly1|930129|scaffold_302586.1
Length=1815
Score = 2870 bits (1554), Expect = 0.0
Identities = 1733/1820 (95%), Gaps = 10/1820 (1%)
Strand=Plus/Plus
Query 177 TCTAACTGCTCAAATAAGAAAATGGTTCATGTGTCATCATCTCATGGAGCCAAAGATGGC 236
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 TCTAACTTCTCAAATAAGAAAATGGTTCATGTGTCATCATCTCATGGAGCAAAAGATGGC 60
Query 237 TCTGAAGAAGCCTAT-GATTACAGAGGAAACCCACCAGATAAGTCTAAAACCGGTGGATG 295
|| ||||||| || | |||||| ||||||| ||||| |||||||||||||||||||||||
Sbjct 61 TCAGAAGAAG-CTTTCGATTACCGAGGAAATCCACCGGATAAGTCTAAAACCGGTGGATG 119
Query 296 GTTAGGCGCCGGTTTAATTTTAGGGAGCGAGCTATCAGAGAGAATATGCGTGATGGGCAT 355
|||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 120 GTTAGGCGCCGGTTTAATCTTAGGGAGTGAGCTATCGGAGAGAATATGCGTGATGGGCAT 179
Query 356 ATCAATGAATCTAGTGACGTACCTTGTTGGAGATTTACACATCTCATCAGCTAAATCAGC 415
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 ATCAATGAATCTAGTGACTTACCTTGTCGGAGATTTACACATCTCATCAGCTAAATCAGC 239
Query 416 GACCATAGTCACCAACTTCATGGGAACTCTTAACCTTC-TAGGGCTTCTCGGTGGTTTTT 474
||| ||||||||||||||||||||||||||||||| || |||| ||||| |||||||| |
Sbjct 240 GACTATAGTCACCAACTTCATGGGAACTCTTAACC-TCTTAGGACTTCTTGGTGGTTTCT 298
Query 475 TGGCTGACGCTAAACTCGGTCGCTACAAGATGGTTGCAATCTCAGCTTCTGTCACAGCTC 534
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 299 TGGCTGACGCTAAACTCGGTCGCTACAAGATGGTTGCAATCTCAGCTTCTGTTACAGCTC 358
Query 535 TGGGAGTGTTGCTTTTGACGGTGGCTACAACTATCTCAAGCATGAGACCACCAATATGTG 594
|||||||||| |||||||||||||||||||| ||||| || |||||||||||| |||||
Sbjct 359 TGGGAGTGTTACTTTTGACGGTGGCTACAACCATCTCGAGTATGAGACCACCACCATGTG 418
Query 595 ACGATTTCAGGAGACTTCATCATCAGTGCATAGAAGCAAACGGACACCAGTTGGCTCTTC 654
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATGATTTCAGGAGACTTCACCATCAGTGCATAGAAGCAAACGGACACCAGTTGGCTCTTC 478
Query 655 TCTATGTTGCTCTCTATACCATAGCTCTAGGCGGAGGAGGAATCAAATCCAACGTCTCTG 714
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 479 TCTATGTTGCTCTCTATACCATAGCTCTAGGTGGAGGAGGAATCAAATCCAACGTCTCGG 538
Query 715 GTTTTGGGTCTGACCAGTTCGATACTAGTGATCCTAAAGAAGAGAAACAGATGATTTTCT 774
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 539 GTTTCGGGTCTGACCAGTTCGATACTAGTGATCCTAAGGAAGAGAAACAGATGATTTTCT 598
Query 775 TCTTCAACAGATTCTATTTCTCCATCAGCGTCGGCTCTCTCTTCGCCGTGATTGCTCTTG 834
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 599 TCTTCAACAGATTCTATTTCTCCATCAGCGTTGGCTCTCTTTTCGCCGTGATTGCTCTGG 658
Query 835 TTTACGTTCAGGACAACGTCGGGAGAGGCTGGGGTTACGGGATCTCTGCCGCGACTATGG 894
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 659 TTTACGTTCAGGATAACGTCGGGAGAGGCTGGGGTTACGGGATCTCGGCCGCGACTATGG 718
Query 895 TGGTTGCAGCCATTGTTTTACTCTGCGGAACGAAACGGTACCGTTTCAAGAAACCTAAAG 954
||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||
Sbjct 719 TGGTTGCAGCCATTGTTTTGCTTTGTGGAACCAAACGGTACCGTTTCAAGAAACCTAAAG 778
Query 955 GAAGCCCTTTTACAACAATATGGAGGGTTGGTTTCTTGGCTTGGAAGAAAAGAAAGGAGA 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GAAGCCCTTTTACAACAATATGGAGGGTTGGTTTCTTGGCTTGGAAGAAAAGAAAGGAGA 838
Query 1015 GTTACCCTGCGCATCCAAGTCTTTTGAACGGTTATGACAACACCACGGTTCCACACACAG 1074
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GTTACCCAGCGCATCCGAGTCTTTTGAACGGTTATGACAACACCACGGTTCCACACACAG 898
Query 1075 AGATGCTTAAGTGTTTAGACAAAGCCGCAATT-TCCAAGAACGAGAGCTCTCCTAGCTCG 1133
||| ||| |||||||||||||||||||| ||| || ||||||||||| |||||||| |||
Sbjct 899 AGAGGCTAAAGTGTTTAGACAAAGCCGCGATTCTC-AAGAACGAGAGTTCTCCTAGTTCG 957
Query 1134 AAGGACTTCGAAGAGAAGGATCCGTGGATCGTTTCGACTGTTACACAAGTCGAAGAAGTG 1193
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AAGGACTTAGAAGAGAAGGATCCGTGGATCGTTTCGACTGTTACACAAGTCGAAGAAGTG 1017
Query 1194 AAACTCGTGATGAAATTGGTACCGATTTGGGCAACGAACATTCTTTTCTGGACGATTTAC 1253
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 1018 AAACTCGTGATGAAATTGGTGCCTATTTGGGCAACAAACATTCTTTTCTGGACGATTTAC 1077
Query 1254 TCCCAAATGACGACTTTCACGGTCGAACAAGCGACGTTTATGGACCGAAAACTCGGATCT 1313
|| |||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||
Sbjct 1078 TCTCAAATGACGACTTTCACGGTAGAACAAGCAACGTTTATGGACCGAGAACTCGGATCT 1137
Query 1314 TTCACTGTTCCTGCAGGCTCTTACTCTGCTTTCCTCATACTCACAATTCTCCTCTTCACT 1373
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1138 TTCACTGTTCCTGCAGGCTCCTACTCTGCTTTTCTCATACTCACAATTCTCCTCTTCACT 1197
Query 1374 TCCCTTAACGAGAGAGTCTTTGTTCCTTTAACAAGAAGGCTCACAAAAAAGCCTCAAGGA 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TCCCTTAACGAGAGAGTCTTTGTTCCTTTAACAAGAAGGCTCACAAAAAAGCCTCAAGGA 1257
Query 1434 ATCACAAGCCTACAGAGAATCGGAGTAGGGCTAGTATTCTCAATGGCTGCAATGGCTGTA 1493
||||| ||||| ||||||||||||||||| || || |||||||||||||||||||| |||
Sbjct 1258 ATCACCAGCCTCCAGAGAATCGGAGTAGGCCTTGTGTTCTCAATGGCTGCAATGGCCGTA 1317
Query 1494 GCCGCGGTTATAGAGAACGCTAGACGCGAGGCAGCGGTTAACAACGATAAGAAAATAAGC 1553
|| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1318 GCTGCGGTTATAGAGAACGCTAGACGCGAGGCAGCGGTTAACAACGGTACGAAAATAAGC 1377
Query 1554 GCGTTTTGGTTGGTTCCACAATATTTCTTAGTCGGTGCGGGTGAGGCCTTTGCTTACGTT 1613
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GCGTTTTGGTTGGTTCCACAGTATTTCTTAGTCGGTGCGGGTGAGGCCTTTGCTTACGTT 1437
Query 1614 GGACAGCTTGAGTTCTTTATAAGAGAAGCACCAGAGAGGATGAAATCGATGAGCACCGGA 1673
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 GGACAGCTTGAGTTCTTCATAAGAGAAGCACCAGAGAGGATGAAATCGATGAGCACCGGA 1497
Query 1674 TTGTTTCTAAGCACGATATCGATGGGATTCTTCGTGAGTAGCTTGCTTGTTTCGCTTGTT 1733
||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1498 TTGTTTCTAAGTACGATTTCGATGGGATTCTTCGTGAGTAGCTTGCTCGTTTCGCTTGTG 1557
Query 1734 GATAGGGTTACAGACAAAAGCTGGCTTAGAAGTAACCTTAACAAAGCGAGATTGAACTAC 1793
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1558 GATAGGGTTACAGACAAAAGATGGCTTAGAAGTAACCTTAACAAAGCGAGATTGAACTAC 1617
Query 1794 TTCTACTGGTTACTTGTTGTCTTGGGAGCATTGAACTTCTTGATTTTTATTGTGTTTGCC 1853
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1618 TTCTACTGGTTACTTGTTGTCTTGGGAGCATTGAACTTCTTGATTTTTCTTGTGTTTGCC 1677
Query 1854 ATGAAACATCAGTATAAAGCTGATGTGATTACTGTTGTTG-T-GACTGATGATGATTCAG 1911
||||||||||||||||||||||||||||||| |||||| | | || ||||||||||||||
Sbjct 1678 ATGAAACATCAGTATAAAGCTGATGTGATTAGTGTTGT-GATTGA-TGATGATGATTCAG 1735
Query 1912 TGGAGAAGGAAGTGACGAAGAAAGAGAGCTCTGAATTTGAGCTTAAGGACATTCCTTGAA 1971
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 TGGAGAAGGAGGTGAAGAAGAAAGAGAGCTCTGAATTTGAGCTTAAGGACATTCCTTGAA 1795
Query 1972 ACCAGATTTAGAAGAAGaaa 1991
|| |||||| ||||||||||
Sbjct 1796 ACAAGATTTTGAAGAAGAAA 1815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81094131605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5