BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G21680.1

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930130 jgi|Araly1|930130|scaffold_302587.1                        510    2e-144


> Ahg930130 jgi|Araly1|930130|scaffold_302587.1
Length=401

 Score =  510 bits (276),  Expect = 2e-144
 Identities = 332/360 (92%), Gaps = 0/360 (0%)
 Strand=Plus/Plus

Query  1    ATGGGGAATTGCCTAAGACACGACAATGGCGTTGCCAGAAAAGAGAAAGACGATCTCGAT  60
            ||||||||||| ||  |||||||||||| | ||||| |||||||||||||||||||||| 
Sbjct  22   ATGGGGAATTGTCTGCGACACGACAATGCCATTGCCGGAAAAGAGAAAGACGATCTCGAG  81

Query  61   CCGGAGCCGCTGGTAAAGTTATTGGAAGAAGGTAAAACGAGTTTCCGTGGGGAAGAAGAA  120
            || ||||||||||| ||||||||||||||||| |||||||||| |  ||| |||||||||
Sbjct  82   CCCGAGCCGCTGGTTAAGTTATTGGAAGAAGGCAAAACGAGTTACAATGGTGAAGAAGAA  141

Query  121  AGTGAAAGATCAACGGAAGAAGAATCTAAAGTGGTAAGGATAAAAGTTGTGGTGACAAAG  180
            |||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||||||| 
Sbjct  142  AGTGAAAGATCAACGGAAGAAGTATCTAAGGTGATAAGGATTAAAGTTGTGGTGACAAAA  201

Query  181  AAAGAACTTAGACAGATCTTGGGTCACAAGAATGGTATAAACTCCATTCAACAGTTAGTT  240
            |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| |||
Sbjct  202  AAAGAACTTAGACAAATCTTGGGTCACAAGAATGGTATCAACTCCATTGAACAGTTGGTT  261

Query  241  CATGTTCTCAAAGATAGTGGCAGAAACATCTCCATGGCTAGTTATGAAGAAGATGAGAAA  300
            |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct  262  CATGTTCTCAAAGATAGTGGCAGAAACATCTCCAGGGCTAATTATGAAGAAGATGAGAAA  321

Query  301  GAGGAAGGTGATGAAAATTGGAGGCCTACGTTAGAAAGCATTCCTGAGAGTCATTATTGA  360
            || |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  322  GAAGAAGGTAATGAAAATTGGAGGCCTTCGTTAGAAAGCATTCCTGAGAGTCATTATTGA  381



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12820277904


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5