BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21700.3 Length=1275 Score E Sequences producing significant alignments: (Bits) Value Ahg479691 jgi|Araly1|479691|fgenesh2_kg.3__2392__AT3G21700.3 1801 0.0 > Ahg479691 jgi|Araly1|479691|fgenesh2_kg.3__2392__AT3G21700.3 Length=1249 Score = 1801 bits (975), Expect = 0.0 Identities = 1192/1285 (93%), Gaps = 62/1285 (5%) Strand=Plus/Plus Query 12 AAAAAAGAGGAAGAAACACAGAAAAGCTAAAGCTTCGGGCATTATGTATTGAAATCAAAT 71 |||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 1 AAAAAA-AGGAAGAAACACAGAAAAGCTAAAGCTTC-GGCATTATGTATTG--ATCAAAT 56 Query 72 CTCTCTCTCTTTTTCTTCCGTGGCCAAAATGGATCCAAGCAGCTTCTCTTTGGCCA---- 127 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 57 CTCTCTCTCTTTTTCTTCCATGGCCAAAATGGATCCAAGCAGCTTCTCTTTGGCCATCTC 116 Query 128 -TC-TCTTCTTGAAGCTGctttcttcctcaaattcttttttttccaga-t-tcttctcct 183 || ||||||||||||||| ||||||||| || |||||||||| | || ||||| Sbjct 117 TTCTTCTTCTTGAAGCTGC-TTCTTCCTCCAA------TTTTTCCAGATTATCCTCTCC- 168 Query 184 ttcttcttccttcttccttatttcgatttcgaattttg--aattt-tctCAATGGCTCAA 240 ||||||||||||||||||||||||||||||| |||||| ||||| | | |||||||||| Sbjct 169 TTCTTCTTCCTTCTTCCTTATTTCGATTTCG-ATTTTGAAAATTTAT-TAAATGGCTCAA 226 Query 241 TCGTGTCTTAAAATTGTTCGAATCAACAATCTAAGGAACAGAGTGAATCGTCGGATTTTG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 227 TCGTGTCTTAAAATTGTTCGAATCAACAATCTAAGGAACAGAGTGAATCGTCGGATTTTG 286 Query 301 ATTCTCCGACGATTCACACGGTTGTTATGGAGTAGAATCGTTGCTTGTACTCCTGGCAAA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 287 ATTCTCCGACGATTCACACGGTTGTTATGGAGTAGAATCGTTGCTTGTACTCCTGGCAAA 346 Query 361 TCTCGGAGATATCTCTTGCTTTCTCGCGCTCTTCCGTCTCCGACTGTTTCTCGTCCTTCT 420 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 347 TCTCGGAGATATCTCTTGCTTTCTCGCGCTGTTCCGTCTCCGACTGTTTCTCGTCCTTCT 406 Query 421 CCT--TC-TCCGATCCCCGCCGTCGATGTCG-TCGTCggtggtggt-ggtggtggtggtg 475 ||| || ||| ||||||||||| ||||||| | |||| | || || ||||||||||||| Sbjct 407 CCTCCTCCTCCAATCCCCGCCGTGGATGTCGAT-GTCG-TCGTCGTCGGTGGTGGTGGTG 464 Query 476 AGTTTGTTCGTCGTTCGTCGGTTGTTTACGATAATGATAACAGTCATCGGAGATCGGATT 535 |||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| Sbjct 465 AGTTCGTTCGTCGTTCATCGGTTGTCTACGATAACGATAACAGTCATCGGAGATCGGATT 524 Query 536 CTGATTTGGTTTCTTTGAAGATTAGTCTCTTAGGAGATCCAGAAATCGGAAAAACTAGCT 595 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 525 CTGATTTGGTTTCTTTGAAGATCAGCCTCTTAGGAGATCCAGAAATCGGAAAAACTAGCT 584 Query 596 TCCTGGCGAAATATGTTGGAGAAGAGAAAGAAGTAGAAATGAGAGAATTGGAGAAAGGTA 655 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| | Sbjct 585 TCCTGGCGAAATATGTTGGAGAAGGGAAAGAAGTGGAAATGAGAGAATTGGAGAAAGGGA 644 Query 656 TAAATTGTACGGACAAGACGTTATACATGGGAGGTGCTCGCATTTCATATAGTATCTGGG 715 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 645 TAAATTGTACGGACAAGACGTTATACATGGGAGGTGCTCGCATTTCATATAGTATCTGGG 704 Query 716 AATTAGAAGGAGCTGAGAGATCACGAGATCAAATCCCTGTGGCTTGCAAGGACTCTGTTG 775 | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 705 ACTTAGAAGGAGCTGAGAGATCACGAGATCAAATCCCTATGGCTTGCAAGGACTCTGTTG 764 Query 776 CCATTCTCTTTATGTTTGAT-TTAACCAGTCGTTGCACGCTTAATAGTGTCATTAGCTGG 834 | |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 765 CTATTCTCTTTATGTTTGATCTTA-CCAGTCGTTGCACGCTTAATAGTGTCATTAGCTGG 823 Query 835 TATCAACAAGCTAGGAAGTCTAATCAGACGGCGATACCAGTTATGGTAGGAACCAAGTTT 894 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 824 TATCAACAAGCTAGGAAGTCTAATCAGACGGCAATACCAGTTATGGTAGGAACCAAGTTT 883 Query 895 GATGAGTTTATTCAGCTTCCTATTGATCTGCAATGGACAATTGCTAGCCAGGCGAGAACA 954 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 884 GATGAGTTTATTCAGCTTCCTATTGATCTGCAATGGACAATTGCTAGCCAGGCGAGAACA 943 Query 955 TATGCGAAGGCTTTAAACGCGACGCTCTTCTTCTCGAGTGCTTCATACAACATAAACGTG 1014 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 944 TATGCGAAGGCTTTAAACGCGACACTCTTCTTCTCGAGTGCTTCATACAACATAAACGTG 1003 Query 1015 AATAAGATCTTTAAGTTTGTGACGGCGAAGCTCTTCGACTTACCATGGACGGTGGAGCGC 1074 ||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 1004 AATAAGATCTTCAAGTTTGTGACGGCGAAGCTCTTCGACTTACCTTGGACGGTAGAGCGC 1063 Query 1075 AATCTCACAATCGGAGAACCAATCATCGACTTCTAGAATATGTATTTGTATATAATATAA 1134 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1064 AATCTCACAATTGGAGAACCAATCATCGACTTCTAGAATATGTATTTGTATATAATATAA 1123 Query 1135 AAGAAGCGAATCCTGAAGAATGCGttttttttttttttttttAATTCACCGCTAAAGCTT 1194 ||||||||||| | || ||||||| |||||||||| ||||||| Sbjct 1124 AAGAAGCGAATT-T------TG--TTTTTTTC----------AATTCACCGCCAAAGCTT 1164 Query 1195 GTCGCCGTGGGACTGATCGGAC-----T----AGTCGAATTTAAGCGAAATGGAGAGATG 1245 |||||||||||||||||||||| | ||||| |||||||||||||||||||||| Sbjct 1165 GTCGCCGTGGGACTGATCGGACCACAGTTTCTAGTCGTATTTAAGCGAAATGGAGAGATG 1224 Query 1246 AAGCGGCGGAGATTTCGCCCGCTTT 1270 ||||||||||||||||||||||||| Sbjct 1225 AAGCGGCGGAGATTTCGCCCGCTTT 1249 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47653646250 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5