BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21700.3
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479691 jgi|Araly1|479691|fgenesh2_kg.3__2392__AT3G21700.3 1801 0.0
> Ahg479691 jgi|Araly1|479691|fgenesh2_kg.3__2392__AT3G21700.3
Length=1249
Score = 1801 bits (975), Expect = 0.0
Identities = 1192/1285 (93%), Gaps = 62/1285 (5%)
Strand=Plus/Plus
Query 12 AAAAAAGAGGAAGAAACACAGAAAAGCTAAAGCTTCGGGCATTATGTATTGAAATCAAAT 71
|||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1 AAAAAA-AGGAAGAAACACAGAAAAGCTAAAGCTTC-GGCATTATGTATTG--ATCAAAT 56
Query 72 CTCTCTCTCTTTTTCTTCCGTGGCCAAAATGGATCCAAGCAGCTTCTCTTTGGCCA---- 127
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 57 CTCTCTCTCTTTTTCTTCCATGGCCAAAATGGATCCAAGCAGCTTCTCTTTGGCCATCTC 116
Query 128 -TC-TCTTCTTGAAGCTGctttcttcctcaaattcttttttttccaga-t-tcttctcct 183
|| ||||||||||||||| ||||||||| || |||||||||| | || |||||
Sbjct 117 TTCTTCTTCTTGAAGCTGC-TTCTTCCTCCAA------TTTTTCCAGATTATCCTCTCC- 168
Query 184 ttcttcttccttcttccttatttcgatttcgaattttg--aattt-tctCAATGGCTCAA 240
||||||||||||||||||||||||||||||| |||||| ||||| | | ||||||||||
Sbjct 169 TTCTTCTTCCTTCTTCCTTATTTCGATTTCG-ATTTTGAAAATTTAT-TAAATGGCTCAA 226
Query 241 TCGTGTCTTAAAATTGTTCGAATCAACAATCTAAGGAACAGAGTGAATCGTCGGATTTTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 TCGTGTCTTAAAATTGTTCGAATCAACAATCTAAGGAACAGAGTGAATCGTCGGATTTTG 286
Query 301 ATTCTCCGACGATTCACACGGTTGTTATGGAGTAGAATCGTTGCTTGTACTCCTGGCAAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 ATTCTCCGACGATTCACACGGTTGTTATGGAGTAGAATCGTTGCTTGTACTCCTGGCAAA 346
Query 361 TCTCGGAGATATCTCTTGCTTTCTCGCGCTCTTCCGTCTCCGACTGTTTCTCGTCCTTCT 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 347 TCTCGGAGATATCTCTTGCTTTCTCGCGCTGTTCCGTCTCCGACTGTTTCTCGTCCTTCT 406
Query 421 CCT--TC-TCCGATCCCCGCCGTCGATGTCG-TCGTCggtggtggt-ggtggtggtggtg 475
||| || ||| ||||||||||| ||||||| | |||| | || || |||||||||||||
Sbjct 407 CCTCCTCCTCCAATCCCCGCCGTGGATGTCGAT-GTCG-TCGTCGTCGGTGGTGGTGGTG 464
Query 476 AGTTTGTTCGTCGTTCGTCGGTTGTTTACGATAATGATAACAGTCATCGGAGATCGGATT 535
|||| ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 465 AGTTCGTTCGTCGTTCATCGGTTGTCTACGATAACGATAACAGTCATCGGAGATCGGATT 524
Query 536 CTGATTTGGTTTCTTTGAAGATTAGTCTCTTAGGAGATCCAGAAATCGGAAAAACTAGCT 595
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 525 CTGATTTGGTTTCTTTGAAGATCAGCCTCTTAGGAGATCCAGAAATCGGAAAAACTAGCT 584
Query 596 TCCTGGCGAAATATGTTGGAGAAGAGAAAGAAGTAGAAATGAGAGAATTGGAGAAAGGTA 655
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
Sbjct 585 TCCTGGCGAAATATGTTGGAGAAGGGAAAGAAGTGGAAATGAGAGAATTGGAGAAAGGGA 644
Query 656 TAAATTGTACGGACAAGACGTTATACATGGGAGGTGCTCGCATTTCATATAGTATCTGGG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TAAATTGTACGGACAAGACGTTATACATGGGAGGTGCTCGCATTTCATATAGTATCTGGG 704
Query 716 AATTAGAAGGAGCTGAGAGATCACGAGATCAAATCCCTGTGGCTTGCAAGGACTCTGTTG 775
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 705 ACTTAGAAGGAGCTGAGAGATCACGAGATCAAATCCCTATGGCTTGCAAGGACTCTGTTG 764
Query 776 CCATTCTCTTTATGTTTGAT-TTAACCAGTCGTTGCACGCTTAATAGTGTCATTAGCTGG 834
| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 765 CTATTCTCTTTATGTTTGATCTTA-CCAGTCGTTGCACGCTTAATAGTGTCATTAGCTGG 823
Query 835 TATCAACAAGCTAGGAAGTCTAATCAGACGGCGATACCAGTTATGGTAGGAACCAAGTTT 894
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 824 TATCAACAAGCTAGGAAGTCTAATCAGACGGCAATACCAGTTATGGTAGGAACCAAGTTT 883
Query 895 GATGAGTTTATTCAGCTTCCTATTGATCTGCAATGGACAATTGCTAGCCAGGCGAGAACA 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 GATGAGTTTATTCAGCTTCCTATTGATCTGCAATGGACAATTGCTAGCCAGGCGAGAACA 943
Query 955 TATGCGAAGGCTTTAAACGCGACGCTCTTCTTCTCGAGTGCTTCATACAACATAAACGTG 1014
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 944 TATGCGAAGGCTTTAAACGCGACACTCTTCTTCTCGAGTGCTTCATACAACATAAACGTG 1003
Query 1015 AATAAGATCTTTAAGTTTGTGACGGCGAAGCTCTTCGACTTACCATGGACGGTGGAGCGC 1074
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1004 AATAAGATCTTCAAGTTTGTGACGGCGAAGCTCTTCGACTTACCTTGGACGGTAGAGCGC 1063
Query 1075 AATCTCACAATCGGAGAACCAATCATCGACTTCTAGAATATGTATTTGTATATAATATAA 1134
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 AATCTCACAATTGGAGAACCAATCATCGACTTCTAGAATATGTATTTGTATATAATATAA 1123
Query 1135 AAGAAGCGAATCCTGAAGAATGCGttttttttttttttttttAATTCACCGCTAAAGCTT 1194
||||||||||| | || ||||||| |||||||||| |||||||
Sbjct 1124 AAGAAGCGAATT-T------TG--TTTTTTTC----------AATTCACCGCCAAAGCTT 1164
Query 1195 GTCGCCGTGGGACTGATCGGAC-----T----AGTCGAATTTAAGCGAAATGGAGAGATG 1245
|||||||||||||||||||||| | ||||| ||||||||||||||||||||||
Sbjct 1165 GTCGCCGTGGGACTGATCGGACCACAGTTTCTAGTCGTATTTAAGCGAAATGGAGAGATG 1224
Query 1246 AAGCGGCGGAGATTTCGCCCGCTTT 1270
|||||||||||||||||||||||||
Sbjct 1225 AAGCGGCGGAGATTTCGCCCGCTTT 1249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47653646250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5