BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21710.2
Length=923
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479695 jgi|Araly1|479695|fgenesh2_kg.3__2396__AT3G21710.2 1397 0.0
> Ahg479695 jgi|Araly1|479695|fgenesh2_kg.3__2396__AT3G21710.2
Length=918
Score = 1397 bits (756), Expect = 0.0
Identities = 870/922 (94%), Gaps = 20/922 (2%)
Strand=Plus/Plus
Query 16 CTCTACATGATGGATACATTCTCTTGTAATTCTTATGAACAAAACCACCCCCATGATGAT 75
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 CTCTACATGATGGATACATTCTCTTGTAATTCTTATGAACAAAACCACCCACATGATGAT 60
Query 76 GATATTGATATTGATGCTCATGATCATGATTCTCATGGTGGTGATCATCAAGAGGAGAGT 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATATTGATATTGATGCTCATGATCATGATTCTCATGGTGGTGATCATCAAGAGGAGAGT 120
Query 136 GGATGGACAACTTATCTTGATGATTTCTCAAATCAATATAGAACTACTCATCATGAAGAA 195
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 121 GGATGGACAACTTATCTTGATGATTTCTCAAATCAATACAAAACTACTCATCATGAAGAA 180
Query 196 AATGATCATCAAGACAAGAGTTCTTATTCACTTCTTGCCACCTCTACTTCTCTGGTCTCT 255
| |||||||||||| |||||||||| ||||||||||| | |||||||||| |||||||||
Sbjct 181 AGTGATCATCAAGAAAAGAGTTCTTGTTCACTTCTTGGCGCCTCTACTTCCCTGGTCTCT 240
Query 256 GACGCCGCCACCCATGCCTTTTCCGGCAAGAGTTTTCCCGTTAATTTTCCGGCGAAACT- 314
||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| |
Sbjct 241 GACGCGGCCACCCATGCCTTTTCCGGCAAGAGTTTTCCTGTTAATTTTCCGGC-AAATTT 299
Query 315 GAAGTTTGGGAGGGGAAGAACCAAAAAGATTTGTGAGGATGATTCTTTGGAGGACACGGC 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAAGTTTGGGAGGGGAAGAACCAAAAAGATTTGTGAGGATGATTCTTTGGAGGACACGGC 359
Query 375 TAGCTCTCCGGTCAACAGCCCTAAGGTCAGTCACTTTGAACATATTCAGACGCCTCCTAG 434
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 TAGCTCTCCGGTCAACAGCCCTAAGGTCAGTCAGTTTGAACATATTCAGACGCCTCCTAG 419
Query 435 AAAAATTGAGGACTATGTCTCTTCTAGTTTCGTTATGGGAAATATTAGAGGCATGGGGGA 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAAAATTGAGGACTATGTCTCTTCTAGTTTCGTTATGGGAAATATTAGAGGCATGGGGGA 479
Query 495 TCATCAAATCCAAATACAAGAAGGTGGTGAACAAAAAGTGACGCTGATGAGAAATCTCAT 554
|||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 480 TCATAAAATCCAAATACAAGAAGGTGATGAACAAAAAATGACGCTGATGAGAAATCTCAT 539
Query 555 TGACGGAaacaacaacaacaacaacaacaaTA----T--------GGATTTGAGGAGTAG 602
||| |||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 540 TGAAGGAAACAACAACAACAACAACAACAATAACAATAACAATATGGATTTGAGGAGTAG 599
Query 603 AGGATTATGCGTCGTCCCTATCTCCATGTTGGCTAATTTTAACGGTCGCTGCTGAATAAT 662
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 600 AGGATTATGCGTCGTCCCTATCTCCATGTTGGCTAATTATAAAGGTCGCTGCTGAATAAT 659
Query 663 GATAATCAATTCTATAAACATCCTTAATTAACTATATAAACCCTTGTAAATTTGGTGGTG 722
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GATAATCGATTCTGTAAACATCCTTAATTAACTATATAAACCCTTGTAAATTTGGTGGTG 719
Query 723 TTTATATTCGTACCTATCTTGTATATATGTACTTGATGTGTGTATATATGTACATCTTGA 782
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTTATATCCGTACCCATCTTGTATATATGTACTTGATGTGTGTATATATGTACATCTTGA 779
Query 783 TGGGTATGTGCTTTACAT-ATATATGTATAGCTTTCGTGTACATATATAAAACACATCGG 841
||||||||||||| | || | |||||||||||||| |||||||| |||||||||||||||
Sbjct 780 TGGGTATGTGCTT-A-ATTACATATGTATAGCTTTTGTGTACATGTATAAAACACATCGG 837
Query 842 TGGATATGTGTAAAGTA--CGACGTCTATGTTTGCAAACATTTTCTAAGAGCTACTATAT 899
||||||||||| ||||| | ||||||||||||| |||||||| ||||||||||||||||
Sbjct 838 TGGATATGTGTGAAGTATACAACGTCTATGTTTGTAAACATTT-CTAAGAGCTACTATAT 896
Query 900 CATAAACTTTATGAAAGTTTTC 921
||||| || ||||||| |||||
Sbjct 897 CATAAGCTATATGAAACTTTTC 918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34234379466
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5