BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21720.1
Length=2171
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479696 jgi|Araly1|479696|fgenesh2_kg.3__2397__AT3G21720.1 3251 0.0
> Ahg479696 jgi|Araly1|479696|fgenesh2_kg.3__2397__AT3G21720.1
Length=2155
Score = 3251 bits (1760), Expect = 0.0
Identities = 2039/2171 (94%), Gaps = 29/2171 (1%)
Strand=Plus/Plus
Query 14 TTTGCCAATGCAGAAATTAGTATATAAGGAGATGATAGGGAAGAAGAGCAAATATGCTTG 73
||| ||||||||||||||||||||||||||||||||||| ||||||||| || |||||||
Sbjct 1 TTTCCCAATGCAGAAATTAGTATATAAGGAGATGATAGGCAAGAAGAGC-AACATGCTTG 59
Query 74 AAGCTTCTCTAA-TTTCATAGCTCCTAACAAAGCAATATCATTTCCAATTTAT-AAAAGT 131
||||||||| || ||| |||| |||| ||||||||| ||||||||||||| || ||||||
Sbjct 60 AAGCTTCTC-AAGTTT-ATAGGTCCTTACAAAGCAAAATCATTTCCAATTCATAAAAAGT 117
Query 132 TAAAGCCATGGCTGCATCTTTCTCTGTCCCCTCTATGATAATGGAAGAAGAAGGGAGATT 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TAAAGCCATGGCTGCATCTTTCTCTGTCCCCTCTATGATAATGGAAGAAGAAGGGAGATT 177
Query 192 CGAAGCGGAGGTTGCGGAAGTGCAGACTTGGTGGAG-CTCAGAGAGGTTCAAGCTAACAA 250
||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 178 CGAGGCGGAGGTTGCGGAAGTGCAGACTTGGTGG-GCCTCAGAGAGGTTCAAGCTAACAA 236
Query 251 GGCGCCCTTACACTGCCCGTGACGTGGTGGCTCTACGTGGCCATCTCAAGCAAGGCTATG 310
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 237 GGCGTCCTTACACTGCCCGTGACGTGGTGGCTCTACGTGGCCATCTCAAGCAAGGCTACG 296
Query 311 CTTCGAACGAGATGGCTAAGAAGCTGTGGAGAACGCTCAAAAGCCATCAAGCCAACGGTA 370
||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||| |
Sbjct 297 CTTCGAACGAGATGGCTAAGAAGCTGTGGCGAACGCTCAAAAGTCACCAAGCCAACGGCA 356
Query 371 CGGCCTCTCGCACCTTCGGAGCGTTGGACCCTGTTCAGGTGACCATGATGGCTAAACATT 430
||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CGGCCTCTCGCACGTTTGGTGCGTTGGACCCTGTTCAGGTGACCATGATGGCTAAACATT 416
Query 431 TGGACACCATCTATGTCTCTGGTTGGCAGTGCTCGTCCACTCACACATCCACTAATGAGC 490
||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 417 TGGACACCATCTACGTCTCTGGTTGGCAGTGCTCGTCAACTCACACCTCCACTAACGAGC 476
Query 491 CTGGTCCTGATCTTGCTGATTATCCGTACGACACCGTTCCTAACAAGGTTGAACACCTCT 550
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | |
Sbjct 477 CTGGTCCTGATCTTGCTGACTATCCATACGACACCGTTCCTAACAAGGTTGAACACTTAT 536
Query 551 TCTTCGCTCAGCAGTACCATGACAGAAAGCAGAGGGAGGCAAGAATGAGCATGAGCAGAG 610
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 537 TCTTCGCTCAGCAGTACCATGACAGAAAGCAGAGGGAAGCAAGAATGAGCATGAGCAGAG 596
Query 611 AAGAGAGGACAAAAACTCCGTTCGTGGACTACCTAAAGCCCATCATCGCCGACGGAGACA 670
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 597 AAGAGAGGACAAAAACTCCGTTCGTGGACTACCTGAAGCCCATCATAGCCGACGGAGACA 656
Query 671 CCGGCTTT-GGCGGCACCACCGCCACCGTCAAACTCTGCAAGCTTTTCGTTGAAAGAGGC 729
| || ||| || ||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 657 CTGG-TTTCGGAGGCACCACCGCCACCGTCAAACTTTGCAAGCTCTTCGTTGAGAGAGGT 715
Query 730 GCCGCTGGGGTCCACATCGAGGACCAGTCCTCCGTCACCAAGAAGTGTGGCCACATGGCC 789
|||||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 716 GCCGCTGGAGTCCACATCGAGGACCAGTCCTCAGTCACAAAGAAGTGTGGTCACATGGCC 775
Query 790 GGAAAGGTCCTCGTGGCAGTCAGCGAACACATCAACCGCCTTGTCGCGGCTCGGCTCCAG 849
||||| ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 776 GGAAAAGTCCTTGTGGCAGTCAGCGAACACATCAACCGCCTTGTGGCGGCGCGGCTCCAG 835
Query 850 TTCGACGTGATGGGTACAGAGACCGTCCTTGTTGCTAGAACAGATGCGGTCGCAGCTACT 909
||||||||||||||||||||||||||||| || |||||||| || |||||||||||||||
Sbjct 836 TTCGACGTGATGGGTACAGAGACCGTCCTGGTCGCTAGAACGGACGCGGTCGCAGCTACT 895
Query 910 CTGATCCAGTCGAACATTGACGCGAGGGACCACCAGTTCATCCTCGGTGCCACTAACCCG 969
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 896 CTGATCCAGTCGAACATTGACGCGAGGGACCACCAGTTCATCCTCGGTGTCACTAACCCG 955
Query 970 AGCCTTAGAGGCAAGAGTTTGTCCTCGCTTCTGGCTGAGGGAATGACTGTAGGCAAGAAT 1029
|||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 956 AGCCTTAGAGGCAAGAGTTTGTCCTCGCTTCTCGCCGAGGGAATGACGGTAGGCAAGAAC 1015
Query 1030 GGTCCGGCGTTGCAATCCATTGAAGATCAGTGGCTTGGCTCGGCCGGTCTTATGACTTTC 1089
|||||||| |||||||||||||| ||||| |||||| ||||||||||||||||||||||
Sbjct 1016 GGTCCGGCATTGCAATCCATTGAGGATCAATGGCTTACCTCGGCCGGTCTTATGACTTTC 1075
Query 1090 TCGGAAGCTGTCGTGCAGGCCATCAAGCGCATGAACCTCAACGAGAACGAGAAGAATCAG 1149
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1076 TCGGAAGCTGTCGTTCAGGCCATCAAGCGCATGAACCTCAACGAGAATGAGAAGAATCAG 1135
Query 1150 AGACTGAGCGAGTGGTTAACCCATGCAAGGTATGAGAACTGCCTGTCAAATGAGCAAGGC 1209
||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1136 AGACTGAACGAGTGGCTAACCCATGCAAGGTATGAGAACTGTCTGTCAAATGAGCAAGGC 1195
Query 1210 CGAGTGTTAGCAGCAAAACTTGGTGTGACAGATCTTTTCTGGGACTGGGACTTGCCGAGA 1269
|||| |||||||||||||| || ||||| ||||| ||||||||||||||||| || |||
Sbjct 1196 CGAGAATTAGCAGCAAAACTCGGGGTGACGGATCTCTTCTGGGACTGGGACTTACCAAGA 1255
Query 1270 ACCAGAGAAGGATTCTACCGGTTCCAAGGCTCGGTCGCAGCGGCCGTGGTCCGTGGCTGG 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 ACCAGAGAAGGATTCTACCGGTTCCAAGGCTCGGTCGCAGCGGCCGTGGTCCGTGGCTGG 1315
Query 1330 GCCTTTGCACAGATCGCAGACATCATCTGGATGGAAACGGCAAGCCCTGATCTCAATGAA 1389
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1316 GCCTTTGCACAAATCGCAGACATCATCTGGATGGAAACCGCAAGCCCTGATCTCAATGAA 1375
Query 1390 TGCACCCAATTCGCCGAAGGTATCAAGTCCAAGACACCGGAGGTCATGCTCGCCTACAAT 1449
|||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TGCACCCAGTTCTCAGAAGGTATCAAGTCCAAGACACCGGAGGTCATGCTCGCCTACAAT 1435
Query 1450 CTCTCGCCGTCCTTCAACTGGGACGCTTCCGGTATGACGGATCAGCAGATGGTTGAGTTC 1509
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1436 CTCTCGCCGTCTTTCAACTGGGACGCTTCCGGTATGACGGATCAGCAGATGGTGGAGTTC 1495
Query 1510 ATTCCGCGGATTGCTAGGCTCGGATATTGTTGGCAGTTCATAACGCTTGCGGGTTTCCAT 1569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 ATTCCGCGGATTGCTAGGCTCGGATATTGTTGGCAGTTCATAACGCTTGCGGGTTTCCAT 1555
Query 1570 GCGGATGCTCTTGTGGTTGATACATTTGCAAAGGATTACGCTAGGCGCGGGATGTTGGCT 1629
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1556 GCGGACGCTCTTGTGGTTGATACATTTGCAAAGGATTACGCGAGGCGAGGGATGTTGGCT 1615
Query 1630 TATGTGGAGAGGATACAAAGAGAAGAGAGGACCCATGGGGTTGACACTTTGGCTCACCAG 1689
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1616 TATGTGGAGAGGATACAGAGAGAAGAGAGGACCCATGGGGTTGACACTTTGGCTCATCAA 1675
Query 1690 AAATGGTCCGGTGCTAATTACTATGATCGTTATCTTAAGACCGTCCAAGGTGGAATCTCC 1749
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 AAATGGTCAGGTGCTAATTACTATGATCGTTATCTTAAGACCGTCCAAGGTGGAATCTCC 1735
Query 1750 TCCACTGCAGCCATGGGAAAAGGTGTCACTGAAGAACAGTTCAAGGAGAGTTGGACAAGG 1809
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 TCCACTGCAGCAATGGGCAAAGGTGTCACTGAAGAACAGTTCAAGGAGAGTTGGACAAGG 1795
Query 1810 CCGGGAGCTGATGGAATGGGTGAAGGGACTAGCCTTGTGGTCGCCAAGTCAAGAATGTAA 1869
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1796 CCGGGAGCTGATGGAATGGGCGAAGGGACTAGCCTTGTGGTCGCCAAGTCCAGAATGTAA 1855
Query 1870 GACATATGTTCATTACGGCGGTGCGGCCAAAGCGGTGCGGCATCTTCGTAGG-AAAGCTT 1928
|||||| ||||||| ||| |||||||||| ||||| | |||| |||||| ||| |||
Sbjct 1856 GACATACGTTCATTGCGGAGGTGCGGCCAGAGCGG--C---ATCTGCGTAGGGAAA-CTT 1909
Query 1929 GGAAACCACACTATCTTCAATA-TATATCTTTGGACACCCGAGTAAAAGaaaaaaaaaGA 1987
||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||| ||
Sbjct 1910 GGAAACCACACTATCTTTAATACTATATCTTTGGTCACCCGAGTAA--GAAAAAAA--GA 1965
Query 1988 CAGAAACAGATAATAAATGTATCTTTGTTATTGTATTTCTCTTCTTCAACGTAATAATTG 2047
|| ||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||
Sbjct 1966 CAAAAACAGATAATAAATGTATCTTTGTTATTGT-TTTCACTTCTTCTACGTAATAATTG 2024
Query 2048 GGTTAAAAGGTTTGGGGCAATATTTTATGGGGTTTGCTTCTTTGTATGGATATTTGGAAT 2107
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2025 GGTTTAAAGGTTTGGGGCAATATTTTATGGGGTTTGCTTCTTTGTATGGATATTTGGAAT 2084
Query 2108 TTGGTGTTATTGGCT-T------TGGTTATATGATTATTGATATTCTTATAATATTCGTG 2160
|||||||||| | || | ||||||||| || ||||||||||||||| ||||||||
Sbjct 2085 TTGGTGTTATCGCCTATCGGCACTGGTTATATAATGATTGATATTCTTATATTATTCGTG 2144
Query 2161 ATTCAGTTTCT 2171
|||||||||||
Sbjct 2145 ATTCAGTTTCT 2155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81703575525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5