BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G21730.1

Length=741
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg905201 jgi|Araly1|905201|Al_scaffold_0003_2329                    749    0.0  


> Ahg905201 jgi|Araly1|905201|Al_scaffold_0003_2329
Length=483

 Score =  749 bits (405),  Expect = 0.0
 Identities = 457/483 (95%), Gaps = 0/483 (0%)
 Strand=Plus/Plus

Query  54   ATGCATAGCTCACTGAAAACAATGGCTCCAGCAAAGTTGGAACGACTATGTGTTCTCTCA  113
            |||||||||||||||||||||| ||||||||||| ||||||||| |||||| |||||| |
Sbjct  1    ATGCATAGCTCACTGAAAACAACGGCTCCAGCAACGTTGGAACGGCTATGTATTCTCTTA  60

Query  114  TTCTTTCTTTTTTGTGCAACAGTTTTTGGAACAGAATCATTGGAGTCATTGCCTGAGGAT  173
            |||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||
Sbjct  61   TTCTTTCTTTTTTGTGCAACAGTTCTTGGAACAGAATCATTGGAGCCATTGCATGAGGAT  120

Query  174  AAACTGATACTGAGAGGGTTGAAATTTTATGGTTTCCATGGAGTGCTTCCAGAAGAGAGG  233
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct  121  AAACTGATACTGAGAGGGTTGAAATTTTACGGTTTCCATGGAGTGCTTCCAGAAGAGAAG  180

Query  234  GAATTGGGTGGTCTGTTTATCGTTGACATTAATTTGTGGTTGAGTCTGAAAAAGGCCATT  293
             ||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct  181  AAATTGGGGGGTCTGTTTACCGTTGACATTGATTTGTGGTTGAGTCTGAAAAAGGCCATT  240

Query  294  GAATCAGACAACTTAGCAGATACAGTTAGCTTTGCTGATACTTTTAGGCTAGTGAAGAAA  353
            || ||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||
Sbjct  241  GAGTCAGACAACTTAGCAGATACAGTCAGCTTTGCCGATACTTTCAGCCTAGTGAAGAAA  300

Query  354  ATTGTTGAAGGGCCACCAAGAAACCTTTACGAGACGGTTGCGGATGACATAGCGTCTGAA  413
            ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||
Sbjct  301  ATTGTTGAAGGGCCACCAAAAAACCTTTACGAGACGGTTGCGGATCACATAGCGTCTAAA  360

Query  414  ATGCTTGAAACGTTTCCTAAGATAAATGTTATTCGAGTGAAGTTCGGAAAGCCAAATCCC  473
            |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct  361  ATGCTTGAAACGTTTCCTAAGATAAACGTTATTCGAGTCAAGTTCGGAAAGCCAAATCCC  420

Query  474  TCACTAGTTAATAGCACCGTTGATTTCTTAGGGGCCGAGCTTTTCAGGAAGCGAAATCAC  533
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct  421  TCACTAGTTAATAGCACCGTTGATTTCTTAGGTGCCGAGCTTTTCAGGAAGCGAAAGCAC  480

Query  534  TAA  536
            |||
Sbjct  481  TAA  483



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27296008572


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5