BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21740.1
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318914 jgi|Araly1|318914|fgenesh1_pm.C_scaffold_3001930 1568 0.0
> Ahg318914 jgi|Araly1|318914|fgenesh1_pm.C_scaffold_3001930
Length=1014
Score = 1568 bits (849), Expect = 0.0
Identities = 960/1015 (95%), Gaps = 2/1015 (0%)
Strand=Plus/Plus
Query 132 ATGTCGAATTGGAGACATAAACTATGGAGAAAATTGAGCTCATTTC-AGAGAGCTAGTTA 190
||||||||||||||||||||| | |||||||| ||||||||| ||| || || || ||||
Sbjct 1 ATGTCGAATTGGAGACATAAAGTGTGGAGAAATTTGAGCTCAATTCAAG-GATCTTGTTA 59
Query 191 CTCAACTACATCTTCAAGAAACAACAAATTAAAGCTTGATGACCTTAGAAAACTCCGGCC 250
||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |||||||
Sbjct 60 CTCAACTACGCCTTCAAGAACCAACAAAATAAAGCTTGATGACCTTAGAAAAATCCGGCC 119
Query 251 AATGATTCTAAAGAGAATCGAAAATCGAGCTAAAGATTACCCGGTTAAAGAGATTGTTCC 310
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 AATGATTCTAAGGAGAATCGAAAATCGAGCAAAAGATTACCCGGTTAAAGAGATTGTTCC 179
Query 311 TGTAGCTGAAGAAATCCTTATAGCTAGAAAGAATCTAATCAGTAACATCGCCGCTCTTCT 370
||| ||||||||||||||||||||||||||||||||| ||||||| || | || |||||
Sbjct 180 TGTGGCTGAAGAAATCCTTATAGCTAGAAAGAATCTACTCAGTAATGTCACTGCGCTTCT 239
Query 371 TAAGGTGTTTCCTGTCTTGACATGCAAATTCTGTTCAGAAGTGTTTGTTGGCAAAGAAGG 430
||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 240 TAAAGTGTTTCCTGTCTTGACATGCAAATTCTGCTCAGAAGTTTTTGTTGGTAAAGAAGG 299
Query 431 ACATTTGATTGAGACATGTCGTAGTTATATACGGCGTGGTAACAATAGGCTACACGAATG 490
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 300 ACACTTGATTGAGACATGTCGTAGTTATATAAGGCGTGGTAACAATAGGCTACACGAATG 359
Query 491 GGTTCCAGGTTCCATAAACGATATACTTGTGCCAGTTGAATCCTATCACTTACACAACAT 550
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 360 GGTTCCAGGTTCCATAAACGATATACTTGTGCCCGTCGAATCTTATCACTTACACAACAT 419
Query 551 CTCTCAAGGTGTTATCAGACACCAAGAGAGGTTTGATTATGATCGTGTTCCCGCAATCTT 610
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 420 TTCTCAAGGTGTTATCAGACACCAACATAGGTTTGATTATGATCGTGTTCCCGCAATCTT 479
Query 611 GGAACTATGTTGTCAAGCAGGAGCCATCCATCCTGAAGAAATCCTTCAATATTCGGAAAT 670
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||
Sbjct 480 GGAACTATGTTGTCAAGCAGGAGCCATCCATCCCGAAGAAATCCTGCAATATTCGAAAAT 539
Query 671 TCACGATAACCCGCAAATCTCTGAGGAAGATATCAGGAGTTTACCCGCTGGAGATCTCAA 730
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 TCATGATAACCCGCAAATCTCTGATGAAGATATCAGGAGTTTACCCGCTGGAGATCTCAA 599
Query 731 ATATGTTGGGGCAAACGCTCTTATGGCGTGGGAGAAAGTGAGAGCTGGTGTGAAGAAACT 790
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 600 ATATGTTGGGACAAACGCTCTAATGGCGTGGGAGAAAGTGAGAGCTGGTGTAAAGAAACT 659
Query 791 ATTGCTTGTTTATCCTTCAAAAGTTTGCAAACGATGTAAGGAGGTTCATGTGGGTCCGAG 850
||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 660 ATTGCTTGTTTATCCTTCAAAAGTTTGCAAACGGTGCAAGGAGGTTCACGTGGGTCCGAG 719
Query 851 TGGTCATAAAGCTCGGTTATGTGGTGTGTTCAAATATGAGAGCTGGCGCGGCACTCATTA 910
|||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 720 TGGTCATAAAGCTCGGCTATGTGGTGTGTTCAAATACGAGAGTTGGCGCGGCACTCATTA 779
Query 911 CTGGGAAAAAGCCGGTGTGAATGATTTGGTACCCGAGAAAATGGTGTGGCACCGGAGGCC 970
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 780 CTGGGAAAAAGCCGGTGTGAACGATTTGGTACCCGAGAAAGTGGTGTGGCACCGGAGGCC 839
Query 971 TCAGGACCCAGTGGTTCTTGTTGACGAAGGGCGGAGTTATTATGGGCATGCCCCTGCTAT 1030
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 840 TCAGGACCCAGTGGTTCTTGTTGACGAAGGGCGGAGTTATTATGGACATGCCCCTGCTAT 899
Query 1031 TGTGAGCCTTTGTAGCCATACCGGTGCCATTGTTCCTGTAAAATACGCTTGCAAGATGAA 1090
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGTGAGCCTTTGTAGCCATGCCGGTGCCATTGTTCCTGTAAAATACGCTTGCAAGATGAA 959
Query 1091 GCCCCAAGGTTTATCTTTTTCTTTCACTAATCCAGTTCCAAATCTCGAAACGTAG 1145
|||||||||||||||||||||||||||| || ||||||||||||||||||| |||
Sbjct 960 GCCCCAAGGTTTATCTTTTTCTTTCACTTATTCAGTTCCAAATCTCGAAACATAG 1014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49597915017
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5