BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21770.1
Length=1237
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930141 jgi|Araly1|930141|scaffold_302598.1 1530 0.0
> Ahg930141 jgi|Araly1|930141|scaffold_302598.1
Length=1031
Score = 1530 bits (828), Expect = 0.0
Identities = 969/1037 (93%), Gaps = 10/1037 (1%)
Strand=Plus/Plus
Query 49 CAAAATCGAGGTAACTACTAGATGAAGACGATGACGCAATTAAATATTGCGGTTGTGGTT 108
||||||| |||||||| | | |||| |||||||| |||||| ||||||||||||| ||||
Sbjct 3 CAAAATCAAGGTAACT-C-A-ATGACGACGATGAAGCAATTGAATATTGCGGTTGCGGTT 59
Query 109 GTAGTGACGGTTCTTATTGGAATGTTGAGATCATCGGAGGCTCAACTTCAAATGAATTTC 168
| |||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 60 GCAGTGACAGTTCTTATTGGAATGTTGGGATCATCAGAGGCTCAACTTCAAATGAATTTC 119
Query 169 TACGCGAAGAGCTGTCCAAACGCAGAGAAAATCATTTCAGATCATATTCAAAATCATATC 228
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 120 TACGCGAAGAGCTGTCCAAACGCAGAGAAAATCATTTCTGACCATATTCAAAATCATATC 179
Query 229 CAC-AATGGTCCTTCTCTTGCAGCTCCTCTCATCCGAATGCACTTCCATGATTGCTTCGT 287
| | |||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 180 C-CTAATGGTCCTTCTCTTGCAGCTCCTCTCATCAGGATGCACTTCCATGATTGCTTCGT 238
Query 288 TAGGGGATGTGACGGATCGGTGTTGATAAATTCAACATCTGGTAACGCAGAGAGAGATGC 347
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 239 TAGGGGATGTGATGGATCGGTGTTGATAAATTCAACATCTGGGAACGCAGAGAGAGATGC 298
Query 348 ACCACCGAATCTAACACTTAGAGGATTCGGTTTCGTGGAAAGGATTAAGGCTCTTCTTGA 407
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 299 ACCACCGAATCTAACACTTAGAGGATTCGGTTTCGTAGAAAGGATTAAGGCTCTTCTTGA 358
Query 408 AAAAGTGTGTCCTAAGACTGTTTCTTGCGCAGATATCATTGCTTTGACTGCTAGAGACGC 467
|||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 359 AAAAGTGTGTCCTAAGACTGTTTCTTGCGCTGATATCATCGCTTTGACCGCTAGAGACGC 418
Query 468 AGTTGTCGCCACCGGAGGTCCTTCATGGAGTGTTCCAACGGGTAGAAGAGACGGTAGGAT 527
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 419 AGTTGTTGCCACCGGAGGTCCTTCATGGAATGTTCCAACGGGTAGAAGAGACGGTAGGAT 478
Query 528 CTCAAATAAGACGGAGGCTACTAATAACATTCCACCTCCAACGAGTAATTTCACGACTTT 587
||||||| |||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 479 CTCAAATGTGACGGAGGCTACGAACAACATTCCACCGCCAACGAGTAATTTCACGACTTT 538
Query 588 ACAACGACTTTTCAAAAACCAAGGCCTTAATCTCAAGGACCTTGTTCTGCTCTCTGGGGC 647
||| |||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 539 ACAGCGACTTTTCAAAAACCAAGGCCTTAATCTCAAAGATCTTGTTCTGCTCTCCGGGGC 598
Query 648 TCACACGATTGGCGTCTCACATTGTTCTTCCATGAATACGCGTCTCTACAACTTCTCGAC 707
|||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 599 TCACACGATTGGTGTCTCGCATTGTTCTTCCATGAACACACGTCTCTACAACTTCTCGAC 658
Query 708 TACAGTAAAACAAGATCCATCTCTCGATAGCCAGTATGCAGCAAATCTAAAGGCTAACAA 767
|||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 659 TACAGTCAAACAAGATCCATCTCTCGATAGCCAGTACGCAGCTAATCTAAAGGCTAACAA 718
Query 768 ATGTAAGAGCCTTAACGACAATAGCACCATCCTCGAGATGGATCCCGGTAGTAGCAGAAG 827
||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 719 ATGTAAGAGCCTTAACGACAACACCACTATCCTCGAGATGGATCCCGGTAGTAGCAGAAC 778
Query 828 CTTCGATCTCAGTTATTATAGGCTTGTCTTGAAGAGGAGAGGCTTGTTTCAGTCTGATTC 887
|||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||
Sbjct 779 CTTCGATCTCAGTTATTATAGGCTTGTCCTGAAGAGAAGAGGCTTTTTTCAGTCTGATTC 838
Query 888 TGCATTAACAACGAACTCAGCGACTTTGAAGGTGATCAACGACTTGGTCAACGGTTCTGA 947
|||||||||||||||||||||||| |||||| |||||||| | |||||||||||| ||||
Sbjct 839 TGCATTAACAACGAACTCAGCGACGTTGAAGATGATCAACAATTTGGTCAACGGTCCTGA 898
Query 948 A-AAGAAGTTTTTCAAAGCTTTTGCTAAGTCAATGGAGAAGATGGGGAGAGTTAAAGTGA 1006
| || ||||||| | ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 899 ACAA-AAGTTTTACGAAGCTTTTGCTAAGTCAATGGAGAAGATGGGGAGAGTCAAAGTGA 957
Query 1007 AGACTGGCTCAGCTGGTGTGATCAGGACACGGTGTTCTGTCGCTGGAAGTTAGTAAGCTT 1066
|||| |||||||| ||||||||||||||||||||||||||||| |||||||||| | |||
Sbjct 958 AGACGGGCTCAGCCGGTGTGATCAGGACACGGTGTTCTGTCGCCGGAAGTTAGTTATCTT 1017
Query 1067 CAGGGTCGGAATGTGGT 1083
|| |||||| |||||
Sbjct 1018 --GG-TCGGAAAGTGGT 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46204975404
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5