BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21780.1
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342328 jgi|Araly1|342328|fgenesh1_pg.C_scaffold_3002091 819 0.0
Ahg930144 jgi|Araly1|930144|scaffold_302601.1 625 3e-178
Ahg493362 jgi|Araly1|493362|fgenesh2_kg.7__2795__AT4G15260.1 422 5e-117
Ahg946800 jgi|Araly1|946800|scaffold_703029.1 414 8e-115
> Ahg342328 jgi|Araly1|342328|fgenesh1_pg.C_scaffold_3002091
Length=1182
Score = 819 bits (443), Expect = 0.0
Identities = 619/701 (88%), Gaps = 23/701 (3%)
Strand=Plus/Plus
Query 5 ATGAAAATAGAGCTAGTATTCATTCCCTCTCCGGCAATTAGTCATCTCATGGCGACGGTA 64
|||||||| |||||| |||| ||||| ||||| || || |||||||||||| | |||||
Sbjct 1 ATGAAAATTGAGCTAATATTGATTCCTTCTCCCGCGATCAGTCATCTCATGTCTACGGTG 60
Query 65 GAGATGGCGGAGCAACTAGTTGATAAAAACGACAACCTCTCTATCACCGTAATCATCATA 124
||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 61 GAGATGGCGGAGCGACTAGTTGATCTAAACGACCACCTCTCTATCACCGTAATCATCATA 120
Query 125 TCTTTTAGTTCTAAAAATACATCCATGATCACCTCTCT---TA---CATCCAACAACCGC 178
||||| | |||| ||| || || |||||| ||||||| | ||||||| || ||
Sbjct 121 TCTTTCAATTCTCAAAGCACCTCGATGATCGCCTCTCTCACCACCGCATCCAATAAACGA 180
Query 179 CTCCGGTACGAAATAATCTCCGGAGGAGATCAACAACCAACGGAGCTCAAAGCAACTGAT 238
|||| |||||||||||||| ||||||||||||||||| || ||||||| ||| ||||||
Sbjct 181 ATCCGCTACGAAATAATCTCTGGAGGAGATCAACAACCCACAGAGCTCAGAGCGACTGAT 240
Query 239 TCCCACATCCAAAGTCTAAAGCCACTGGTGAGAGACGCGGTTGCTAAACTCGTAGATTCC 298
||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| ||
Sbjct 241 TCCCACATCCAAAGTCTAAAGCCACTGGTGAGAGATGCTGTTGCGAAACTCGTAGAT-CC 299
Query 299 -ACTCTACCAGACGCGCCTCGTCTTGCGGGATTCGTTGTTGACATGTACTGCACGTCGAT 357
|||| ||||||| ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 300 GACTCGACCAGACTTGCCTCGTCTTGCGGGATTCGTCGTCGACATGTACTGCACGTCGAT 359
Query 358 GATCGATGTCGCTAACGAATTTGGCGTCCCTAGTTACTTGTTTTACACCTCTAACGCTGG 417
||||||||||||| |||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 360 GATCGATGTCGCTGACGAATTTGGAGTCCCTAGTTACTTGTTTTACACCTCCAATGCTGG 419
Query 418 ATTTCTTGGACTTTTGCTTCACATTCAGTTCATGTACGA-T--G---CAGAGGATATCTA 471
|||||| |||||||||||||||||||| ||||||||||| | | ||||||||| |||
Sbjct 420 ATTTCTCGGACTTTTGCTTCACATTCAATTCATGTACGACTTAGAGTCAGAGGATACCTA 479
Query 472 TGACATGAGCGAATTAGAAGACTCTGACGTAGAGTTGGTGGTTCCGAGTTTGACTAGTCC 531
||||||||| | |||||||||||| |||| ||||||||||||||||||||||| || |||
Sbjct 480 TGACATGAGTGGATTAGAAGACTCGGACGCAGAGTTGGTGGTTCCGAGTTTGATTAATCC 539
Query 532 TTATCCGTTGAAATGT--CTTCCTTA--C---A--TTTTCAAATCAAAAGAGTGGCTCAC 582
|||||||||||||||| |||||||| | | |||||||||||||||||||||||||
Sbjct 540 TTATCCGTTGAAATGTGTCTTCCTTAATCCTTACATTTTCAAATCAAAAGAGTGGCTCAC 599
Query 583 tttttttGTAACTCAAGCGAGAAGATTCAGAGAAACTAAGGGCATTTTGGTAAACACGGT 642
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 600 TTTTTTTGTAACTCAAGCGAGAAGATTCAGAGAGACTAAGGGCATTTTGGTAAATACGGT 659
Query 643 TCCTGACTTGGAACCTCAAGCGTTGACGTTTCTTTCCAATG 683
|||||||||||| ||||||||||||| |||||| |||||||
Sbjct 660 TCCTGACTTGGAGCCTCAAGCGTTGAAGTTTCTCTCCAATG 700
Score = 595 bits (322), Expect = 3e-169
Identities = 424/473 (90%), Gaps = 8/473 (2%)
Strand=Plus/Plus
Query 809 GTGTTCCTCTGTTTCGGGAGCATGGGAGGGTTCAGTGAGGAACAAGTGAGAGAAACCGCA 868
||||||||||| |||||||| |||||||| |||||||| ||||||| ||||||| |||
Sbjct 700 GTGTTCCTCTGCTTCGGGAGTATGGGAGGCTTCAGTGACGAACAAGCAAGAGAAATCGCC 759
Query 869 TTAGCTCTCGATCGAAGCGGCCACCGGTTTCTTTGGTCTCTCCGTCGTGCATCTCCGAAT 928
||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 760 GTAGCTCTGGATCGAAGCGGCCACCGGTTTCTCTGGTCTCTCCGCCGTGCATCTCCGAAT 819
Query 929 ATATTGAGAGAGCCTCCCGGAGAATTCACAAACCTAGAGGAGATTCTCCCAGAAGGGTTT 988
||| ||| ||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 820 ATAATGAAAGAGCCTCCCGGAGAATTCACTAACCTAGACGAGATTCTCCCGGAAGGGTTT 879
Query 989 -TTCGATCGGACGGCTAACAGAGGAAAGGTTATCGGATGGGCTGAACAGGTGGCCATATT 1047
|| ||||||||| | || ||||| || |||||||||||| ||| |||||| | ||
Sbjct 880 CTT-GATCGGACGAAGGAGAGGGGAAACGTGATCGGATGGGCTCCACAAGTGGCCGTGTT 938
Query 1048 GGCGAAGCCGGCGATCGGAGGTTTTGTTTCTCACGGCGGATGGAATTCGACGTTGGAGAG 1107
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 939 GGCGAAGCCGGCGATCGGGGGTTTTGTTTCTCACGGTGGATGGAATTCAACGTTGGAGAG 998
Query 1108 TTTGTGGTTTGGTGTTCCGATGGCGATTTGGCCGCTTTACGCTGAACAGAAGTTTAACGC 1167
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 999 TTTGTGGTTTGGTGTTCCGATGGCGATTTGGCCGCTTTACGCCGAACAGAAGTTTAACGC 1058
Query 1168 TTTCGAGATGGTGGAAGAGCTTGGTTTGGCTGTGGAGATCAAGAAGCATTGGCGAGGAGA 1227
||| ||||||||||| |||||||| ||||| |||||||||||||| || |||||||||||
Sbjct 1059 TTTTGAGATGGTGGAGGAGCTTGGCTTGGCGGTGGAGATCAAGAATCACTGGCGAGGAGA 1118
Query 1228 TCTTTTGTTGGGGAGGTCGGAGAT-----T-GTGACGGCGGAGGAGATTGAGA 1274
|||||||||||||||||||||||| | ||||||||||||||||| ||||
Sbjct 1119 TCTTTTGTTGGGGAGGTCGGAGATGGAGATTGTGACGGCGGAGGAGATAGAGA 1171
> Ahg930144 jgi|Araly1|930144|scaffold_302601.1
Length=1527
Score = 625 bits (338), Expect = 3e-178
Identities = 864/1113 (78%), Gaps = 56/1113 (5%)
Strand=Plus/Plus
Query 338 GACATGTACTGCACGTCGATGATCGATGTCGCTAACGAATTTGGCGTCCCTAGTTACTTG 397
||||||| ||||| |||||| | ||| | || || || ||| | || || |||||||||
Sbjct 380 GACATGTTTTGCACATCGATGGTAGATCTGGCGAAAGAGTTTAGTGTTCCGAGTTACTTG 439
Query 398 TTTTACACCTCTAACG-CTGGATTTCT-TGGACTTTTGCT-TCACATTCAGTTCATGTAC 454
|||||||| || | || | ||| |||| | || || | | ||| ||||| | ||| |
Sbjct 440 TTTTACACGTCGAGCGCCGGGA-TTCTCT-CAC-TTGGATATCATGTTCAGATGTTGTGC 496
Query 455 GATGCAG-AGGA-TATCTATGACA-TG--AGCGAATTA-GAAGACTCTGACG-TAGAGTT 507
|||| || | | || | ||| | || || | |||| | ||||| || | | | |||
Sbjct 497 GATG-AGAACAAGTA-CGATGTTAGTGAAAGTG-ATTATGCCGACTCAGAAGCT-GTGTT 552
Query 508 GGTGGTTCCGAGTTTGACTAGTCCTTATCCGTTGAAATGTCTTCCTTACATTTTCAAATC 567
|| ||||||||||||||| ||||||||||| |||| ||||||||| || | || |||
Sbjct 553 GGACGTTCCGAGTTTGACTCGTCCTTATCCGGTGAAGTGTCTTCCTCACGCTCTCGCATC 612
Query 568 -AAAAGAGTGGCTCACtttttttGTAACTCAAGCGAG-AAGATTCAGAGAAACT-AAGGG 624
|||| ||||||| | | ||||||| |||||| || ||| || ||||| | | || ||
Sbjct 613 TAAAA-TGTGGCTCCCGATGTTTGTAAATCAAGCAAGAAAG-TTTAGAGAGA-TGAAAGG 669
Query 625 CATTTTGGTAAACACGGTTCCTGA-CTTGGAACCTCAAGCGTTGACGTTTCTTTCCAATG 683
||||||||||| || ||| |||| ||| |||||||| | ||||| ||||||||| | |
Sbjct 670 TATTTTGGTAAATACTGTTGCTGAGCTT-GAACCTCATGTGTTGAAGTTTCTTTCGAGTA 728
Query 684 GTAACATTCCACGTGCTTACCCAGTAGGACCATTGTTGCATCTCAAAAACGTAAATTG-T 742
|| | | ||| | || ||| || || |||||||||||||||||| | ||| || |||
Sbjct 729 GTGATACTCCTCCTGTTTATCCTGTTGGACCATTGTTGCATCTCGAGAAC-CAAGTTGAG 787
Query 743 GATTACGTGGACAAGAAGCAATCGGAGATTTTACGGTGGCTAGACGAGCAACCGCCAAGA 802
|||| | ||| |||| | ||||||||||||||| ||| |||| |||||||| || ||
Sbjct 788 GATTCCAAGGATGAGAAACGATCGGAGATTTTACGATGGTTAGATGAGCAACCACCTAGT 847
Query 803 TCTGTAGTGTTCCTCTG-TTTCGGGAGCATGGGAGGGTTCAGTGAGGAACAAGTGAGAGA 861
|| || ||||| || || ||| |||||||||||||| |||| | |||||||||| |||||
Sbjct 848 TCGGTTGTGTTTCTTTGCTTT-GGGAGCATGGGAGGCTTCAATAAGGAACAAGTAAGAGA 906
Query 862 AACCGCATTAGCTCTCGATCGAAGCGGCCACCGGTTTCTTTGGTCTCTCCGTCGTGCATC 921
|| |||| |||| || || ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 907 AATCGCAATAGCCCTAGAGCGAAGTGGCCACCGGTTTCTCTGGTCTCTCCGTCGTGCATC 966
Query 922 TCCGAATATATTGAGAGAGCCTCCCGGAGAATTCACAAACCTAGAGG-AGATTCTCCCAG 980
||| |||||||| | ||| ||||| |||| || || || ||||||| || ||||||| |
Sbjct 967 TCCTAATATATTTAAAGAACCTCCAAGAGAGTTTACTAATCTAGAGGAAG-TTCTCCCGG 1025
Query 981 AAGGGTT-TTTCGATCGGACGGCTAACAGAGG-AAAGGTTATCGGATGGGCTGAACAGGT 1038
|||| || ||| || | ||| | | ||| ||| || || ||||||||| ||||||
Sbjct 1026 AAGGATTCTTT-GAAAGAACGAAGGAGAAAGGTAAA-GTGATAGGATGGGCTCCACAGGT 1083
Query 1039 GGCCAT-ATTGGCGAAGCCGGCGATCGGAGGTTTTGTTTCTCACGGCGGATGGAATTCGA 1097
||| | || ||||| ||||| || |||||||| || | ||| | |||||||||||||
Sbjct 1084 GGCGGTGCTT-GCGAATCCGGCTATAGGAGGTTTCGTCACACACTGTGGATGGAATTCGA 1142
Query 1098 CGTTGGAGAGTTTGTGGTTTGGTGTTCCGATGGC-GATTTGGCCGCTT-TACGCTGAACA 1155
|| | |||||| | ||||| |||||||| | || | |||||| || ||||| |||||
Sbjct 1143 CGCTAGAGAGTCTCTGGTTCGGTGTTCCAACAGCTG-CATGGCCG-TTATACGCAGAACA 1200
Query 1156 GAAGTTTAACGCTTTCGAGATGGTGGAAGAGCTTGGTTTGGCTGTGGAGATCAA-GAAGC 1214
|||||| ||||||||| ||||||||| |||||||| ||||| |||||||| || ||||
Sbjct 1201 GAAGTTCAACGCTTTCTTGATGGTGGAGGAGCTTGGATTGGCGGTGGAGAT-AAGGAAGT 1259
Query 1215 ATTGGCGAGGAGATCTTTTGTTG-GGGAGGT-CGGAGA-TT---GTGACGGCGGAGGAGA 1268
|||||||||| |||| || | | |||| || | || | || ||||||||||| ||||
Sbjct 1260 ATTGGCGAGGTGATC-ATT-TAGCGGGA-GTGCCGACAGTTACGGTGACGGCGGATGAGA 1316
Query 1269 TTGAGAAAGGAATCATATGTTTGATGGAGCAAGACAGTGACGTCAGGAAGAGAGTGAATG 1328
| ||||||| |||||| ||| | ||||||||||| |||||||| || || |||||||| |
Sbjct 1317 TAGAGAAAGCAATCATGTGTCTAATGGAGCAAGATAGTGACGTGAGAAAAAGAGTGAAGG 1376
Query 1329 AGATCAGCGAGAAGTGCCACGTGGCTTTAATGGACGGTGGATCGTCA-GAAACTGCTTTG 1387
|||| || ||||| |||||||||||||||||||||||||||||||| | | || |||
Sbjct 1377 AGATGAGTGAGAAATGCCACGTGGCTTTAATGGACGGTGGATCGTCGCGGAT-TGGGTTG 1435
Query 1388 -AAAAGATTTATTCAAGACGTAACGGAGAATAT 1419
||||| |||||| ||||||| ||| |||||||
Sbjct 1436 CAAAAG-TTTATTGAAGACGTTACGAAGAATAT 1467
> Ahg493362 jgi|Araly1|493362|fgenesh2_kg.7__2795__AT4G15260.1
Length=1550
Score = 422 bits (228), Expect = 5e-117
Identities = 535/678 (79%), Gaps = 42/678 (6%)
Strand=Plus/Plus
Query 763 ATC-GGAGATTTTACGGTGGCTAGACGAGCAACCGCC-AAGATCTGTAGTGTTCCTCTG- 819
||| ||||||||| |||||||| || ||||||||||| || |||||| ||||| || ||
Sbjct 717 ATCTGGAGATTTTGCGGTGGCTCGATGAGCAACCGCCGAA-ATCTGTTGTGTTTCTTTGC 775
Query 820 TTTCGGGAGCATGGGAGGGTTCAGTGAGGAAC-AAGTGAGAGAAACCGCAT-TAGC-TCT 876
||| || ||||||||||| |||| |||||| | || | ||||| || | |||| | |
Sbjct 776 TTT-GGAAGCATGGGAGGTTTCACTGAGGAGCAAACT-AGAGAGGTAGC-TGTAGCGT-T 831
Query 877 CGATCGAAGCGGCCACCGGTTTCTTTGGTCTCTCCGTCGTGCATCTCCGAATATATTGA- 935
|||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 832 AGATCGAAGTGGTCACCGGTTTCTTTGGTCTCTCCGTCGTGCATCGCCGAATATAATGAT 891
Query 936 GAGAGCCTCCCGGAGAAT-TCACAAACCTAGAGGAGATTCTCCCAGAAGGGTTTTTCGAT 994
| || | ||||||||| | | || || || |||||| || | || || ||||| || ||
Sbjct 892 G-GAACGTCCCGGAGATTAT-ACGAATCTTGAGGAGGTTTTACCGGAGGGGTTCTTGGAG 949
Query 995 CGGACGGCTAACAGAGG-AAAGGTTATCGGATGGGCTGAACAGGTGGCCATATTGGCGAA 1053
|||||| | | ||||| |||| | ||||||||||| ||| ||||| | | | |||
Sbjct 950 CGGACGTCGGATAGAGGGAAAG-TGATCGGATGGGCACCACAAGTGGCGGTGCTAGAGAA 1008
Query 1054 GCCGGCGATCGGAGGTTTTGTTTCTCACGGCGGATGGAATTCGACGTTGGAGAGTTTGTG 1113
|||||||| ||||| |||||| |||| | || ||||| |||| | | ||||| |||||
Sbjct 1009 ACCGGCGATAGGAGGGTTTGTTACTCATTGTGGTTGGAACTCGATGCTAGAGAGCTTGTG 1068
Query 1114 GTTTGGTGTTCCGATGGCGATTTGGCCGCTTTACGCTGAACAGAAGTTTAACGC-TTTCG 1172
||||||||||||||||| || |||||||||||||| || |||||| ||||||| ||| |
Sbjct 1069 GTTTGGTGTTCCGATGGTGACGTGGCCGCTTTACGCGGAGCAGAAGGTTAACGCGTTT-G 1127
Query 1173 AGATGGTGGAAGAGCTTGGT-TTGGCTGTGGAGATCAAG-AAG--CATTGGCGAGGAGAT 1228
|||||||||| ||| |||| ||||| |||||||| | | ||| |||| | |||||||
Sbjct 1128 AGATGGTGGAGGAG-TTGGGGTTGGCGGTGGAGAT-ACGTAAGTGCATTAG--AGGAGAT 1183
Query 1229 CTT-TTGTTGG--GGAGG--TCGGAGATTGTGACGGCGGAGGAGATTGAGAAAGGAATCA 1283
|| |||||| |||| | ||||| || ||||||||||| || |||| || ||||
Sbjct 1184 -TTGTTGTTGATCGGAGAAAT-GGAGACGGTTACGGCGGAGGATATAGAGAGAGCTATCA 1241
Query 1284 TATGTTTGATGGAGCAAGACAGTGACGTCAGGAAG-AGAGTGAATGAGATCAGCG-AGAA 1341
|| |||||||||| || ||||| || |||| | |||||||| ||||| ||| ||||
Sbjct 1242 GGCGTGTGATGGAGCAGGATAGTGATGTAAGGA-GTAGAGTGAAGGAGATG-GCGGAGAA 1299
Query 1342 GTGCCACGTGGCTTTAATGGACGGTGGATCGTCAGAA-ACTGCTTTG-AAAAGATTTATT 1399
||| |||||||| ||||||||||||||||| || ||| || |||||| ||||| ||||||
Sbjct 1300 GTGTCACGTGGCGTTAATGGACGGTGGATCTTC-GAAGACGGCTTTGGAAAAG-TTTATT 1357
Query 1400 CAAGACGTAACGGAGAAT 1417
||||||| | ||||||
Sbjct 1358 GAAGACGTGATAGAGAAT 1375
> Ahg946800 jgi|Araly1|946800|scaffold_703029.1
Length=1442
Score = 414 bits (224), Expect = 8e-115
Identities = 826/1105 (75%), Gaps = 87/1105 (8%)
Strand=Plus/Plus
Query 353 TCGATGATCGATGTCGCTAACGAATTTGGCG-TCCCTAGTTACT-TGTTTTACACCTCTA 410
|||||||| ||||| ||||||||||| || | ||| | |||| | || | ||||| || |
Sbjct 369 TCGATGATTGATGTAGCTAACGAATTCGGAGTTCCGT-GTTA-TATGATCTACACATCGA 426
Query 411 ACGCT--GGATTTCTTGGACTTTTGCTTCACATTCAGTTCATGTACGATGCAGAGGATAT 468
||||| || |||| ||| | |||||||| |||| ||||||||| || | || |
Sbjct 427 ACGCTACGG--TTCTAGGAATCATGCTTCACCTTCAACAAATGTACGAT-CAAAAGA-A- 481
Query 469 CTATGACATGAGCGAATTAGAAGACTCTGACGTA-GAGTTGGTGGTTCCGAGTTTGACTA 527
|||||| | || || || ||||| || | | | ||||||| | ||||| | ||| |
Sbjct 482 GTATGACGTCAGTGAGTTGGAAGAGTCAGTC-AACGAGTTGGAGTTTCCGTCTCTGAGTC 540
Query 528 GTCCTTATCC-GTTGAAATGTCTTCCTTACATTT--TCAAATCAAAAGAGTGGCTCACtt 584
|||||||||| | |||| |||||||| | ||||| ||| ||||| |||||| | ||||
Sbjct 541 GTCCTTATCCAG-TGAAGTGTCTTCC-T-CATTTCCTCACTTCAAAGGAGTGG-TTACTT 596
Query 585 -tttttGTAACTCAAGCGAGAAG-ATTCA-GAGAA-ACT-AAGGGCATTTTGGTAAACAC 639
| ||| || | ||||| || | ||| | | ||| | | || || ||||||||||| ||
Sbjct 597 CTCTTTCTAGCACAAGCCAG--GTATTTACG-GAAGA-TGAAAGGTATTTTGGTAAATAC 652
Query 640 GGTTCCTGA-CTTGGAACCTCAAGCGTTGACGTTTCTTT-CCAATGGT-AACATTCCACG 696
||| |||| ||| |||||| | || || | | ||| |||| | | | |||| |
Sbjct 653 AGTTGCTGAGCTT-GAACCTTACGC-TTTAAAAATGTTTAATAATGTTGATC-TTCCTCA 709
Query 697 TGCTTACCCAGTAGGACCATTGTTGCATCTCAAAAACGTAAATTGTGATTACGTGGACAA 756
||||| || ||||||||| |||||||| || ||| | | | | | ||
Sbjct 710 AGCTTATCCGGTAGGACCAGTGTTGCATTTC---GACG---A---CG---A--T-G--AA 752
Query 757 GAAGCAATCGGAGATTTTACGGTGGCTAGACGAGCAACCGCC-AAGATCTGTAGTGTTCC 815
|||||||| |||||||| | |||||| || ||||||||||| || |||||| ||||| |
Sbjct 753 -AAGCAATCAGAGATTTTGCAGTGGCTCGATGAGCAACCGCCGAA-ATCTGTTGTGTTTC 810
Query 816 TCTGTTTCGGGAGCATGGGAGGGTTCA-GTGAGGAACAAG-TGAGAGAAACCG-CATTAG 872
||||||| || ||||||||||| |||| | |||||||||| | ||||||| | |||| |
Sbjct 811 TCTGTTTTGGAAGCATGGGAGGTTTCACG-GAGGAACAAGCT-AGAGAAATGGCCATT-G 867
Query 873 CTCTCGATCGAAGCGGCCACCGGTTTCTTTGGTCTCTCCGTCGTGCATCTCCGAATATAT 932
| || ||||| ||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct 868 CGCTTGATCGTAGCGGTTATCGGTTTCTTTGGTCTCTCCGTCGTGCATCGCCGAATATAA 927
Query 933 TGAGAGAGCC-TCCCGGAGAATTCACAAACCTAGAGGA-GATTCTCCCAGAAGGGTTTTT 990
||| || || ||| |||| ||||| | | || || | ||||||| | ||||| |
Sbjct 928 TGACCGA-CCGTCCTAGAGATTTCACGGATTTGGATGAAG-TTCTCCCGGTGGGGTTCCT 985
Query 991 CGATCGGACGGCTA-ACAGAGGAAAGGTTATCGGATGGGCTGAACAGGTGGCCA-TATTG 1048
|||||||| | | ||||| ||||| | |||||||| ||| ||||| | | |
Sbjct 986 AGATCGGACAT-TGGATAGAGGGAAGGTGGTGGGATGGGCACCACAAGTGGC-AGTGCTA 1043
Query 1049 GCGAAGCCGGCGATCGGAGGTTTTGTTTCTCACGGCGGATGGAATTCGACG-TTGGAGAG 1107
|| || |||||||| ||||| |||||| |||| | || ||||| |||| | ||| | ||
Sbjct 1044 GCAAAACCGGCGATAGGAGGATTTGTTACTCATTGTGGGTGGAACTCGATGCTTGAA-AG 1102
Query 1108 TTTGTGGTTTGGTGTTCCGATGGCGATTTGGCCGCTTTACGCTGAACAGAAGTTTAACGC 1167
|||||||| ||||||||||||| || |||||||| ||||| || |||||| | |||||
Sbjct 1103 CTTGTGGTTCGGTGTTCCGATGGTGACATGGCCGCTCTACGCCGAGCAGAAGATAAACGC 1162
Query 1168 -TTTCGAGATGGTGGAAGAGCTTGGTTTGGCTGTGGAGATCAAG-AAGCA-TTGGCGAGG 1224
||| ||||||||||| ||||| || ||||| |||||||| | | ||| | || |||
Sbjct 1163 GTTT-GAGATGGTGGAGGAGCTGGGATTGGCGGTGGAGAT-ACGTAAGTACTTAAA-AGG 1219
Query 1225 AGATCTT-TT-GTTGGGGAGGTCGGAGATTGTGACGGCGGAGGAGATTGAGAAAGGAATC 1282
|||| || || | || ||| | ||||| || ||||| ||||| || |||| || |||
Sbjct 1220 AGAT-TTGTTCGCCGGAGAGAT-GGAGACGGTTACGGCCGAGGATATAGAGAGAGCTATC 1277
Query 1283 ATATGTTTGATGGAGCAAGACAGTGACGTCAGGAAGAGAGTGAATGAGATCAGC-GAGAA 1341
| || |||||||||| || ||||| || ||||| |||||||| || || || ||||
Sbjct 1278 AGGCGTGTGATGGAGCAGGATAGTGATGTAAGGAATAGAGTGAAGGAAATG-GCTGAGAT 1336
Query 1342 GTGCCACGTGGCTTTAATGGACGGTGGATCGTCAGAA-ACTGCTTTG-AAAAGATTTATT 1399
||| || ||||| ||||||||||||||||| || || ||||||||| ||||| ||||||
Sbjct 1337 GTGTCATGTGGCGTTAATGGACGGTGGATCTTCC-AAGACTGCTTTGCAAAAG-TTTATT 1394
Query 1400 CAAGACGTAACGGAGAATATTGCTT 1424
|||||||| | |||||| ||||||
Sbjct 1395 CAAGACGTGATAGAGAATGTTGCTT 1419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55802208925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5