BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21790.1
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930144 jgi|Araly1|930144|scaffold_302601.1 1917 0.0
Ahg479703 jgi|Araly1|479703|fgenesh2_kg.3__2404__AT3G21800.1 985 0.0
> Ahg930144 jgi|Araly1|930144|scaffold_302601.1
Length=1527
Score = 1917 bits (1038), Expect = 0.0
Identities = 1348/1498 (90%), Gaps = 19/1498 (1%)
Strand=Plus/Plus
Query 1 ATGAAATTTGAGCTTGTTTTCATCCCCTATCCCGGAATCGGTCATCTCCGATCAACGGTA 60
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 23 ATGAAATTTGAGCTTGTCTTCATCCCCTATCCTGGAATCGGTCATCTCCGATCAACGGTG 82
Query 61 GAAATGGCAAAGCTACTAGTGGACCGTGAAACTC-GTCTCTCTATCTCCGTTATCATCCT 119
|| ||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||
Sbjct 83 GAGATGGCAAAGCTACTAGTGGACCGTGAAAC-CAGTCTCTCTATCTCCGTAATCATCCT 141
Query 120 TCCTTTCATTTCCGAAGGCGAAGTCGGTGCTTCCGATTACATCGCAGCCCTCTCCGCCTC 179
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 TCCTTTCATGTCCGAAGGCGAAGTCGGTGCTTCCGATTACATCGCAGCCCTCTCCGCCTC 201
Query 180 ATCCAA-CAACCGCCTCCGCTACGAAGTTATCTCCGCCGTAGATCAACCAACCATCGA-G 237
||| || | |||| |||||||| ||||| |||||||| | ||||||||||||| | | |
Sbjct 202 ATC-AAGCGACCGTCTCCGCTATGAAGTCATCTCCGCAGAAGATCAACCAACCG-CAAAG 259
Query 238 ATGACGACAATTGAAATCCATATGAAGAACCAAGAACCAAAGGTGAGA-AGCACCGTTGC 296
|||||||| || ||||||||||| || ||||| | |||||||||||| | | ||||||
Sbjct 260 ATGACGACTATGGAAATCCATATCAAAAACCAGGTGCCAAAGGTGAGACA-CGCCGTTGA 318
Query 297 AAAACTCCTTGAAGACTATTCGT-CTAAACCGGACTCGCCGAAGATCG-CTGGCTTTGTT 354
||||||| | |||||||| || | |||||||| ||||||| | |||| | || |||||
Sbjct 319 AAAACTCGTCGAAGACTACTC-TACTAAACCGAACTCGCCCAGGATCTTCGGG-TTTGTC 376
Query 355 CTAGACATGTTTTGCACTTCGATGGTAGATGTAGCGAACGAGTTTGGT-TTCCCGAGTTA 413
|| |||||||||||||| |||||||||||| | ||||| |||||| || |||| ||||||
Sbjct 377 CTCGACATGTTTTGCACATCGATGGTAGATCTGGCGAAAGAGTTTAGTGTTCC-GAGTTA 435
Query 414 -TATGTTTTACACCTCCAGTGCCGGGATTCTCTCAGTTACATATCATGTTCAAATGTTGT 472
| |||||||||| || || ||||||||||||||| || |||||||||||| |||||||
Sbjct 436 CT-TGTTTTACACGTCGAGCGCCGGGATTCTCTCACTTGGATATCATGTTCAGATGTTGT 494
Query 473 GCGATGAGAACAAGTACGATGTTAGTGAAAATGATTATGCAGACTCGGAAGCTGTGTTGA 532
|||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||
Sbjct 495 GCGATGAGAACAAGTACGATGTTAGTGAAAGTGATTATGCCGACTCAGAAGCTGTGTTGG 554
Query 533 ACTTTCCGAGTTTGAGTCGTCCTTATCCGGTGAAGTGTCTTCCTCACGCTCTGGCAGCTA 592
|| |||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 555 ACGTTCCGAGTTTGACTCGTCCTTATCCGGTGAAGTGTCTTCCTCACGCTCTCGCATCTA 614
Query 593 ATATGTGGCTCCCGGTGTTTGTAAACCAAGCGAGAAAGTTTAGGGAGATGAAAGGTATTT 652
| |||||||||||| |||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 615 AAATGTGGCTCCCGATGTTTGTAAATCAAGCAAGAAAGTTTAGAGAGATGAAAGGTATTT 674
Query 653 TGGTAAATACTGTTGCTGAGCTTGAACCTTATGTGTTAAAGTTTCTTTCTAGTAGTGATA 712
||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||
Sbjct 675 TGGTAAATACTGTTGCTGAGCTTGAACCTCATGTGTTGAAGTTTCTTTCGAGTAGTGATA 734
Query 713 CTCCTCCTGTTTATCCTGTTGGACCATTGTTGCATCTTGAGAACCAACGT-GATGATTCT 771
||||||||||||||||||||||||||||||||||||| ||||||||| || || |||||
Sbjct 735 CTCCTCCTGTTTATCCTGTTGGACCATTGTTGCATCTCGAGAACCAA-GTTGAGGATTCC 793
Query 772 AAGGACGAGAAACGGTTGGAGATTATACGGTGGTTGGATCAGCAACCACCAAGTTCGGTT 831
||||| |||||||| | ||||||| |||| ||||| ||| |||||||||| |||||||||
Sbjct 794 AAGGATGAGAAACGATCGGAGATTTTACGATGGTTAGATGAGCAACCACCTAGTTCGGTT 853
Query 832 GTGTTTCTCTGCTTTGGGAGCATGGGAGGCTTCGGTGAGGAACAAGTAAGAGAGATCGCA 891
|||||||| |||||||||||||||||||||||| | |||||||||||||||| ||||||
Sbjct 854 GTGTTTCTTTGCTTTGGGAGCATGGGAGGCTTCAATAAGGAACAAGTAAGAGAAATCGCA 913
Query 892 ATCGCGTTAGAGCGAAGTGGGCACCGGTTTCTCTGGTCTCTTCGTCGCGCATCTCCGAAT 951
|| || ||||||||||||| |||||||||||||||||||| ||||| |||||||| |||
Sbjct 914 ATAGCCCTAGAGCGAAGTGGCCACCGGTTTCTCTGGTCTCTCCGTCGTGCATCTCCTAAT 973
Query 952 ATATTCAAAGAACTTCCAGGAGAGTTTACTAATCTAGAGGAAGTTCTCCCGGAAGGATTC 1011
||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 974 ATATTTAAAGAACCTCCAAGAGAGTTTACTAATCTAGAGGAAGTTCTCCCGGAAGGATTC 1033
Query 1012 TTTGATCGAACGAAAGATATAGGTAAAGTGATTGGATGGGCTCCACAAGTAGCCGTTCTT 1071
||||| ||||||| || | |||||||||||| |||||||||||||| || || || |||
Sbjct 1034 TTTGAAAGAACGAAGGAGAAAGGTAAAGTGATAGGATGGGCTCCACAGGTGGCGGTGCTT 1093
Query 1072 GCGAATCCGGCTATAGGAGGTTTCGTAACTCATTGCGGGTGGAATTCTACGCTAGAGAGT 1131
|||||||||||||||||||||||||| || || || || |||||||| ||||||||||||
Sbjct 1094 GCGAATCCGGCTATAGGAGGTTTCGTCACACACTGTGGATGGAATTCGACGCTAGAGAGT 1153
Query 1132 CTTTGGTTTGGTGTTCCAACAGCTGCATGGCCGTTATACGCAGAGCAGAAGTTCAATGCT 1191
|| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1154 CTCTGGTTCGGTGTTCCAACAGCTGCATGGCCGTTATACGCAGAACAGAAGTTCAACGCT 1213
Query 1192 TTCTTAATGGTGGAGGAGCTTGGATTGGCGGTGGAGATAAGGAAGTATTGGCGAGGTGAA 1251
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 TTCTTGATGGTGGAGGAGCTTGGATTGGCGGTGGAGATAAGGAAGTATTGGCGAGGTGAT 1273
Query 1252 CATTTGGCGGGATTACCGACGGCTACTGTGACAGCGGAGGAGATAGAGAAAGCAATCATG 1311
||||| |||||| | ||||| | ||| ||||| ||||| |||||||||||||||||||||
Sbjct 1274 CATTTAGCGGGAGTGCCGACAGTTACGGTGACGGCGGATGAGATAGAGAAAGCAATCATG 1333
Query 1312 TGTCTAATGGAACAAGATAGTGACGTGAGGAAAAGAGTGAAGGATATGAGCGAGAAATGC 1371
||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 1334 TGTCTAATGGAGCAAGATAGTGACGTGAGAAAAAGAGTGAAGGAGATGAGTGAGAAATGC 1393
Query 1372 CATGTGGCTTTAATGGATGGTGGATCGTCGCGTACTGCGTTGCAAAAGTTTATTGAAGAG 1431
|| |||||||||||||| |||||||||||||| | || |||||||||||||||||||||
Sbjct 1394 CACGTGGCTTTAATGGACGGTGGATCGTCGCGGATTGGGTTGCAAAAGTTTATTGAAGAC 1453
Query 1432 GTTGCGAAGAATATAGTTTCACTAGATAAGGAATTTGAGCATGTA-GCTCTTAAATGA 1488
||| |||||||||| ||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1454 GTTACGAAGAATATCGTTTCACTAGATAAGGAATTTGAGCCGGTACGCTCTTAAATGA 1511
> Ahg479703 jgi|Araly1|479703|fgenesh2_kg.3__2404__AT3G21800.1
Length=1446
Score = 985 bits (533), Expect = 0.0
Identities = 1179/1480 (80%), Gaps = 88/1480 (6%)
Strand=Plus/Plus
Query 4 AAATTTGAGCTTGTTTTCATCCCCTATCCCG-GAATCGGTCATCTCCGATCAACGGTAGA 62
|||||||||||||| ||| | || | ||| | | || |||||||| ||||| | || ||
Sbjct 7 AAATTTGAGCTTGTCTTCGTACCGTTTCCTGTG-ATTGGTCATCTTAGATCAGCAGTGGA 65
Query 63 AATGGCAAAGCTACTAGTGGACCGTGAAACTCGTCTCTCTATCTCCGTTATCATCCTTCC 122
||||| |||||||||||||| | |||| ||| ||||||||||||||||||||||||||
Sbjct 66 GATGGCGAAGCTACTAGTGGAGCAAGAAAATCGCCTCTCTATCTCCGTTATCATCCTTCC 125
Query 123 TTTCATTTCCGAAGGCGA-AGTC-GGTGCTTCCGATTACATCGCAGCCCTCTCCGCCTCA 180
| || |||||| | ||| | || | | |||||| ||| |||||||||||||||||| |
Sbjct 126 TCTCCTTTCCGGTGACGACA-TCAGCT-CTTCCGCTTATATCGCAGCCCTCTCCGCCGAA 183
Query 181 TCCAACAACCGCCTCCGCTACGAAGTTATCTCCGCCGTAGATCAACCAACCATCGAGATG 240
|||||| ||||||||||||| | ||||||| ||| | ||||||||||||| ||||| |
Sbjct 184 TCCAACGACCGCCTCCGCTATGTAGTTATCCCCGGAGAAGATCAACCAACCGTCGAG-T- 241
Query 241 ACGACAATTGAAATCCATATGAAGAACCAAGA-ACCAAAGGTGAGAA-GCACCGTTGCAA 298
|| | || | | | |||| | | | || ||||||| || | | || || |
Sbjct 242 --TAC-A-TG---T-C----G-AGAATC-ATATCCCGAAGGTGA-AACGTGCTGTCGCCA 286
Query 299 AACTCCTTGAAGACTATTCGTCTAA---ACCGGACTCGCCGAAGATCGCTGGCTTT-GTT 354
||||| | || ||||| | || || |||||||||||||| | | ||||| ||| | |
Sbjct 287 AACTCGTCGACGACTA--C-TCAAAGGTACCGGACTCGCCGAGGCTAGCTGG-TTTAG-T 341
Query 355 C-TAGACATGTTTTGCACTTCGATGGTAGATGTAGCGAACGAGTTTGGT-TTCCCGAGTT 412
| | ||||||||||| || ||| || |||| || || || |||||| || || ||| |||
Sbjct 342 CGTCGACATGTTTTGTACCTCGGTGATAGACGTGGCTAATGAGTTTAGTGTT-CCGTGTT 400
Query 413 A-TATGTTTTACACCTCCAGTGCCGGGATTCTCTCAGTTACA-TATCATGTTCAAATGTT 470
| | |||||||||| || | || ||| ||||| | | | || ||| | || |||||
Sbjct 401 ACT-TGTTTTACACGTCAAATGTTGGGGTTCTCGCTCTCGGATTA-CATATCCAGATGTT 458
Query 471 GTGCGATGAGAA-CAAGTACGATGTTAGTGAAAATGATTATGCAGACTCGGAAGCT-GTG 528
|| |||| |||| || ||| ||| || ||||| ||||| || ||||||||||| | ||
Sbjct 459 GTACGATAAGAAGGAA-TACAATGCTACTGAAACTGATTTTGAAGACTCGGAAG-TCCTG 516
Query 529 TTGAACT-TTCCGAGTTTGAGTCGTCCTTATCCGGTGAAGTGTCTTCCTCACGCTCTGGC 587
||| | | |||||||||||| | |||||||||||||||||||||||||| ||| | ||||
Sbjct 517 TTGGA-TGTTCCGAGTTTGACTTGTCCTTATCCGGTGAAGTGTCTTCCTTACGGTTTGGC 575
Query 588 AGC-TAATATGTGGCTCCCGGTGTTTGTAAACCAAGCGAGAAAG-TTTAGGGAGATGAAA 645
| | || | |||||| || |||||||| | ||||| || ||| || ||||||||||||
Sbjct 576 AACGAAAGA-GTGGCTTCCTATGTTTGTACATCAAGCAAG-AAGATTCAGGGAGATGAAA 633
Query 646 GGTATTTTGGTAAATACTGTTGCTGAGCTTGAACCTTATGTGTTAAAGTTTCTT---TCT 702
|||||||||||||||||| ||||||| ||||||||||||| ||| ||| |||| |||
Sbjct 634 GGTATTTTGGTAAATACTTTTGCTGATCTTGAACCTTATGCGTTGGAGTCTCTTCACTCT 693
Query 703 AGTAGTGATACTCCTCCTGTTTATCCTGTTGGACCATTGTTGCATCTTGAGAACCAACGT 762
||| |||||||||||| | |||||| || ||||||||||||||||| |||||||| ||
Sbjct 694 AGTGGTGATACTCCTCGGGCTTATCCAGTGGGACCATTGTTGCATCTCGAGAACCAT-GT 752
Query 763 -GATGATTCTAAGGACGAGAAACGGTT-GGAGATTATACGGTGGTTGGATCAGCAACCAC 820
|| | |||||| |||||||| |||| ||||||| |||| ||||| ||| | |||||||
Sbjct 753 TGACGGTTCTAAAGACGAGAAG-GGTTTGGAGATTTTACGTTGGTTAGATGACCAACCAC 811
Query 821 C-AAGTTCGGTTGTGTTTCTCTGCTTTGGGAGCATGGGAGGCTT-CGGTGAGGAACAAGT 878
| || | |||| |||||||| |||||||| ||| | |||||||| || |||||||||||
Sbjct 812 CTAAAT-CGGTAGTGTTTCTTTGCTTTGGAAGCGTAGGAGGCTTTCG-TGAGGAACAAGC 869
Query 879 AAGAGAGATCGCAATCGCG-TTAGAGCGAAGTGGGCACCGGTTTCTC-TGGTCTCTTCGT 936
|||||| ||||| ||||| || ||||||||||| || || ||||| |||||||| ||
Sbjct 870 AAGAGAAATCGCTATCGCCCTT-GAGCGAAGTGGTCATCG-TTTCTTGTGGTCTCTCCGC 927
Query 937 CGCGCATCTCCGAATATATTC-A-AAG-AACTTCCAGGAGAGTTTACTAATCTAGAGGAA 993
|||||||||| || || || | ||| ||||||| ||||| || || ||||| || |||
Sbjct 928 CGCGCATCTC--AAGAT-TTAGATAAGGAACTTCCTGGAGAATTCACGAATCTTGAAGAA 984
Query 994 GTTCTCCCGGAAGGATTCTTTGATCGAACGAAAGATATAGGTAAAG-TGATTGGATGGGC 1052
|||| |||||||||||||||||||| |||||||||| ||| |||| |||||||||||||
Sbjct 985 ATTCTTCCGGAAGGATTCTTTGATCGGACGAAAGATAAAGG-AAAGGTGATTGGATGGGC 1043
Query 1053 TCCACA-AGTAGCCGTTCTTGCGAATCCGGCTATAGGAGGTTTCGTAACTCATTGCGGGT 1111
|||||| | | || || || || || ||||| | ||||||||||| ||||| ||||||
Sbjct 1044 TCCACAGA-TGGCGGTGCTGGCAAAGCCGGCGGTCGGAGGTTTCGTTACTCACGGCGGGT 1102
Query 1112 GGAATTCTA-CGCTAGAGAGTCTTTGGTTTGGTGTTCCAACAGCTGC-ATGGCCGTTATA 1169
||||||| | | || |||||||||||||| |||||||| | ||| || ||||||||||||
Sbjct 1103 GGAATTCGATC-CTTGAGAGTCTTTGGTTCGGTGTTCCTATAGC-GCCATGGCCGTTATA 1160
Query 1170 CGCAGAGCAGAAGTTCAATGCTTTCTTAATGGTGGAGGAGCTTGGATTGGCGGTGGAGAT 1229
||||||||| || ||||| |||||| | |||| |||||||||||| ||||||||| ||||
Sbjct 1161 CGCAGAGCAAAAATTCAACGCTTTCATGATGGCGGAGGAGCTTGGTTTGGCGGTGAAGAT 1220
Query 1230 AAGGAAGTATTGGCGAGGTGAACATTTGGCGGGATTACCGACGG-CTACTGTGACAGCGG 1288
|||||||| ||||||||| || || |||| |||| || ||| | || |||| ||||
Sbjct 1221 AAGGAAGTGTTGGCGAGGCGATCAGTTGGTGGGAGCGGCGTCGGTC-ACGGTGATGGCGG 1279
Query 1289 AGGAGATAGAGAAAGCAATCATG-TGTCTAATGGAACAAGATAGTGACGTGAGGAAAAGA 1347
|||||||||||| || ||||| | ||| | |||||||||||||||||||||||||| |||
Sbjct 1280 AGGAGATAGAGAGAGGAATCA-GATGTTTGATGGAACAAGATAGTGACGTGAGGAAGAGA 1338
Query 1348 GTGAAGGATATGAGCGAGAAATGCCATGTGGCTTTAATGGATGGTGGATCGTCGCG-TAC 1406
|||||||| ||||| ||||||||||| ||||| |||| |||||||||||||| | | |
Sbjct 1339 GTGAAGGAGATGAGTGAGAAATGCCACGTGGCGTTAAAAGATGGTGGATCGTCTCAAT-C 1397
Query 1407 TGCGTTGCAAA-AGTTTATTGAAGAGGTTGCGAAGAATAT 1445
||| ||| ||| | |||||| |||| ||| | ||||||||
Sbjct 1398 TGCTTTGAAAATA-TTTATTCAAGACGTTACAAAGAATAT 1436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55687938190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5