BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21800.1
Length=1580
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479703 jgi|Araly1|479703|fgenesh2_kg.3__2404__AT3G21800.1 1879 0.0
Ahg930144 jgi|Araly1|930144|scaffold_302601.1 1013 0.0
> Ahg479703 jgi|Araly1|479703|fgenesh2_kg.3__2404__AT3G21800.1
Length=1446
Score = 1879 bits (1017), Expect = 0.0
Identities = 1310/1453 (90%), Gaps = 14/1453 (1%)
Strand=Plus/Plus
Query 1 ATGAACAAATTTGCGCTTGTCTTCGTACCATTTCCTAT-ACTTGGTCATCTCAAATCAAC 59
||||||||||||| ||||||||||||||| |||||| | | |||||||||| | |||| |
Sbjct 1 ATGAACAAATTTGAGCTTGTCTTCGTACCGTTTCCTGTGA-TTGGTCATCTTAGATCAGC 59
Query 60 CGCCGAGATGGCTAAGCTACTAGTGGAGCAAGAAACTCGCCTCTCTATCTCCATTATCAT 119
| |||||||| |||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 60 AGTGGAGATGGCGAAGCTACTAGTGGAGCAAGAAAATCGCCTCTCTATCTCCGTTATCAT 119
Query 120 CCTTCCTCTTCTTTCCGGAGACGACGTCAG-TGCTTCCGCTTATATCTCAGCTCTTTCCG 178
||||||||| |||||||| |||||| |||| | |||||||||||||| |||| || ||||
Sbjct 120 CCTTCCTCTCCTTTCCGGTGACGACATCAGCT-CTTCCGCTTATATCGCAGCCCTCTCCG 178
Query 179 CCGCATCCAACGACCGCCTTCACTATGAAGTGAT-CTCGGACGGAGATCAACCAACCGTC 237
||| ||||||||||||||| | ||||| ||| || | |||| | ||||||||||||||||
Sbjct 179 CCGAATCCAACGACCGCCTCCGCTATGTAGTTATCCCCGGA-GAAGATCAACCAACCGTC 237
Query 238 GGGTTACATGTCGATAACCACATCCCGATGGTGAAACGTACCGTTGCAAAACTCGTTGAT 297
| |||||||||||| || || ||||||| |||||||||| | || || |||||||| ||
Sbjct 238 GAGTTACATGTCGAGAATCATATCCCGAAGGTGAAACGTGCTGTCGCCAAACTCGTCGAC 297
Query 298 GACTACTC-AAGGCGGCCGGACTCGCCGAGGCTCGCTGGTTTAGTTGTTGACATGTTTTG 356
|||||||| |||| ||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 298 GACTACTCAAAGG-TACCGGACTCGCCGAGGCTAGCTGGTTTAGTCGTCGACATGTTTTG 356
Query 357 TATCTCGGTGATAGACGTGGCTAATGAGGTTAGTGTTCCGTGTTACTTGTTTTACACGTC 416
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 357 TACCTCGGTGATAGACGTGGCTAATGAGTTTAGTGTTCCGTGTTACTTGTTTTACACGTC 416
Query 417 AAACGTTGGGATTCTTGCTCTTGGGTTACATATTCAGATGTTGTTTGATAAGAAGGAGTA 476
||| |||||| |||| ||||| || |||||||| |||||||||| ||||||||||| ||
Sbjct 417 AAATGTTGGGGTTCTCGCTCTCGGATTACATATCCAGATGTTGTACGATAAGAAGGAATA 476
Query 477 CAGTGTC-AGTGAAACTGATTTTGAAGACTCGGAAGTTGTGTTGGATGTTCCGAGTTTGA 535
|| || | | ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 477 CAATG-CTACTGAAACTGATTTTGAAGACTCGGAAGTCCTGTTGGATGTTCCGAGTTTGA 535
Query 536 CTTGTCCTTATCCGGTGAAGTGTCTTCCTTATGGTTTGGCAACGAAAGAGTGGCTTCCTA 595
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 536 CTTGTCCTTATCCGGTGAAGTGTCTTCCTTACGGTTTGGCAACGAAAGAGTGGCTTCCTA 595
Query 596 TGTATCTAAATCAAGGTAGAAGATTCAGAGAGATGAAAGGTATTTTGGTAAATACTTTTG 655
||| | || |||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 596 TGTTTGTACATCAAGCAAGAAGATTCAGGGAGATGAAAGGTATTTTGGTAAATACTTTTG 655
Query 656 CTGAGCTTGAACCTTATGCGTTGGAGTCTCTTCACTCTAGTGGTGATACTCCTCGTGCTT 715
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 656 CTGATCTTGAACCTTATGCGTTGGAGTCTCTTCACTCTAGTGGTGATACTCCTCGGGCTT 715
Query 716 ATCCAGTGGGACCATTGTTGCATCTCGAGAACCATGTTGACGGTTCTAAAGACGAGAAGG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ATCCAGTGGGACCATTGTTGCATCTCGAGAACCATGTTGACGGTTCTAAAGACGAGAAGG 775
Query 776 GTTCGGACATTTTACGGTGGTTAGATGAACAACCACCTAAATCGGTAGTGTTCCTCTGCT 835
||| ||| |||||||| ||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 776 GTTTGGAGATTTTACGTTGGTTAGATGACCAACCACCTAAATCGGTAGTGTTTCTTTGCT 835
Query 836 TTGGAAGCATAGGAGGCTTTAACGAGGAACAAGCAAGAGAAATGGCCATTGCACTTGAGA 895
|||||||| ||||||||||| |||||||||||||||||||| || || || ||||||
Sbjct 836 TTGGAAGCGTAGGAGGCTTTCGTGAGGAACAAGCAAGAGAAATCGCTATCGCCCTTGAGC 895
Query 896 GAAGTGGTCACCGCTTCTTGTGGTCTCTTCGCCGTGCATCTCGAGATATAGATAAGGAAC 955
|||||||||| || |||||||||||||| ||||| ||||||| |||| ||||||||||||
Sbjct 896 GAAGTGGTCATCGTTTCTTGTGGTCTCTCCGCCGCGCATCTCAAGATTTAGATAAGGAAC 955
Query 956 TTCCCGGAGAATTCAAGAATCTTGAAGAAATTCTCCCGGAAGGATTCTTTGATCGGAC-A 1014
|||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 956 TTCCTGGAGAATTCACGAATCTTGAAGAAATTCTTCCGGAAGGATTCTTTGATCGGACGA 1015
Query 1015 AAGGATAAAGGAAAGGTGATCGGATGGGCTCCACA-AGTAGCCGTGCTGGCTAAGCCAGC 1073
||| |||||||||||||||| |||||||||||||| | | || |||||||| ||||| ||
Sbjct 1016 AAG-ATAAAGGAAAGGTGATTGGATGGGCTCCACAGA-TGGCGGTGCTGGCAAAGCCGGC 1073
Query 1074 AATCGGAGGTTTTGTTACTCATTGCGGGTGGAACTCGATACTCGAGAGTCTTTGGTTCGG 1133
|||||||||| |||||||| |||||||||| ||||| || |||||||||||||||||
Sbjct 1074 GGTCGGAGGTTTCGTTACTCACGGCGGGTGGAATTCGATCCTTGAGAGTCTTTGGTTCGG 1133
Query 1134 TGTTCCTATAGCGCCATGGCCGTTATACGCTGAGCAGAAGTTTAATGCTTTCGTGATGGT 1193
|||||||||||||||||||||||||||||| ||||| || || || |||||| ||||||
Sbjct 1134 TGTTCCTATAGCGCCATGGCCGTTATACGCAGAGCAAAAATTCAACGCTTTCATGATGGC 1193
Query 1194 GGAGGAGCTTGGTTTGGCAGTGAAGATAAGAAAGTATTGGCGAGGCGATCAGTTGGTGGG 1253
|||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1194 GGAGGAGCTTGGTTTGGCGGTGAAGATAAGGAAGTGTTGGCGAGGCGATCAGTTGGTGGG 1253
Query 1254 AACGGCGACGGTCATAGTGACGGCAGAGGAGATAGAGAGAGGAATCAGATGTTTGATGGA 1313
| ||||| |||||| |||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1254 AGCGGCGTCGGTCACGGTGATGGCGGAGGAGATAGAGAGAGGAATCAGATGTTTGATGGA 1313
Query 1314 GCAAGATAGTGACGTGAGGAATAGAGTGAAGGAGATGAGTAAGAAATGTCACATGGCTTT 1373
|||||||||||||||||||| |||||||||||||||||| ||||||| ||| |||| ||
Sbjct 1314 ACAAGATAGTGACGTGAGGAAGAGAGTGAAGGAGATGAGTGAGAAATGCCACGTGGCGTT 1373
Query 1374 AAAGGATGGTGGCTCGTCTCAATCTGCTTTGAAATTATTTATTCAAGACGTTACGAAGTA 1433
||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct 1374 AAAAGATGGTGGATCGTCTCAATCTGCTTTGAAAATATTTATTCAAGACGTTACAAAGAA 1433
Query 1434 TATTGCTTGAGAA 1446
|||||||||||||
Sbjct 1434 TATTGCTTGAGAA 1446
> Ahg930144 jgi|Araly1|930144|scaffold_302601.1
Length=1527
Score = 1013 bits (548), Expect = 0.0
Identities = 1171/1467 (80%), Gaps = 62/1467 (4%)
Strand=Plus/Plus
Query 7 AAATTTGCGCTTGTCTTCGTACCATTTCCTATACTTGGTCATCTCAAATCAACCGCCGAG 66
||||||| |||||||||| | || | |||| | | ||||||||| |||||| | |||
Sbjct 26 AAATTTGAGCTTGTCTTCATCCCCTATCCTGGAATCGGTCATCTCCGATCAACGGTGGAG 85
Query 67 ATGGCTAAGCTACTAGTGGAGCAAGAAACTC-GCCTCTCTATCTCCATTATCATCCTTCC 125
||||| |||||||||||||| | ||||| | | |||||||||||| | |||||||||||
Sbjct 86 ATGGCAAAGCTACTAGTGGACCGTGAAAC-CAGTCTCTCTATCTCCGTAATCATCCTTCC 144
Query 126 TCTTC-TTTCCGGAGACGACGTCAGTGCTTCCGCTTATATCTCAGCTCTTTCCGCCGCAT 184
| ||| | |||| || ||| ||| ||||||||| ||| ||| |||| || |||||| |||
Sbjct 145 T-TTCATGTCCGAAGGCGAAGTCGGTGCTTCCGATTACATCGCAGCCCTCTCCGCCTCAT 203
Query 185 CCAA-CGACCGCCTTCACTATGAAGTGATCT-CGGACGGAGATCAACCAA-C-C---G-T 236
||| |||||| || | ||||||||| |||| || | | ||||||||||| | | | |
Sbjct 204 -CAAGCGACCGTCTCCGCTATGAAGTCATCTCCGCA-GAAGATCAACCAACCGCAAAGAT 261
Query 237 --CG-----GG--TTACATGTCGATAACCACATCCCGATGGTGA-A-ACGTACCGTTGCA 285
|| || | ||| || | ||||| | || | ||||| | ||| |||||| |
Sbjct 262 GACGACTATGGAAATCCATATCAAAAACCAGGTGCCAAAGGTGAGACACG--CCGTTGAA 319
Query 286 AAACTCGTTGATGACTACTCAAGGCGGCCGGACTCGCCGAGGCTC-GCTGGTTTAGTTGT 344
|||||||| || |||||||| | ||| ||||||| ||| || | ||||| || |
Sbjct 320 AAACTCGTCGAAGACTACTCTACTAAACCGAACTCGCCCAGGATCTTCGGGTTT-GTCCT 378
Query 345 TGACATGTTTTGTATC-TCGGTGATAGA-CGTGGCTAATGAGGTTAGTGTTCCGTGTTAC 402
||||||||||| | | ||| || |||| | |||| || ||| ||||||||||| |||||
Sbjct 379 CGACATGTTTTGCA-CATCGATGGTAGATC-TGGCGAAAGAGTTTAGTGTTCCGAGTTAC 436
Query 403 TTGTTTTACACGTCAAACGTTGGGATTCT-TGCTCTTGGGTTA-CATATTCAGATGTTGT 460
|||||||||||||| | || |||||||| | | ||| || || ||| ||||||||||||
Sbjct 437 TTGTTTTACACGTCGAGCGCCGGGATTCTCT-CACTT-GGATATCATGTTCAGATGTTGT 494
Query 461 TTGATAAGAAGGAGTACAG-TGTCAGTGAAACTGATTTTGAAGACTCGGAAGTTGTGTTG 519
||| |||| ||||| | ||| ||||||| ||||| || ||||| |||| |||||||
Sbjct 495 GCGATGAGAACAAGTAC-GATGTTAGTGAAAGTGATTATGCCGACTCAGAAGCTGTGTTG 553
Query 520 GATGTTCCGAGTTTGACTTGTCCTTATCCGGTGAAGTGTCTTCCTTATGGTTTGGCAACG 579
|| ||||||||||||||| |||||||||||||||||||||||||| | | | | ||| |
Sbjct 554 GACGTTCCGAGTTTGACTCGTCCTTATCCGGTGAAGTGTCTTCCTCACGCTCTCGCATCT 613
Query 580 AAAGA-GTGGCTTCCTATGTATCTAAATCAAGGTAG-AAGATTCAGAGAGATGAAAGGTA 637
||| | |||||| || |||| | ||||||||| || ||| || ||||||||||||||||
Sbjct 614 AAA-ATGTGGCTCCCGATGTTTGTAAATCAAGCAAGAAAG-TTTAGAGAGATGAAAGGTA 671
Query 638 TTTTGGTAAATACTTTTGCTGAGCTTGAACCTTATGCGTTGGAGTCTCTTCACTCTAGTG 697
|||||||||||||| ||||||||||||||||| ||| |||| ||| |||| || |||
Sbjct 672 TTTTGGTAAATACTGTTGCTGAGCTTGAACCTCATGTGTTGAAGTTTCTT---TCGAGTA 728
Query 698 GTGATACTCCTCGTGCTTATCCAGTGGGACCATTGTTGCATCTCGAGAACCATGTTGACG 757
|||||||||||| || |||||| || |||||||||||||||||||||||||| ||||| |
Sbjct 729 GTGATACTCCTCCTGTTTATCCTGTTGGACCATTGTTGCATCTCGAGAACCAAGTTGA-G 787
Query 758 G-TTCTAAAGACGAGAAGGGTTCGGACATTTTACGGTGGTTAGATGAACAACCACCTAAA 816
| ||| || || ||||| | ||||| |||||||| ||||||||||| ||||||||||
Sbjct 788 GATTCCAAGGATGAGAAACGATCGGAGATTTTACGATGGTTAGATGAGCAACCACCTAGT 847
Query 817 TCGGTAGTGTTCCTCTGCTTTGGAAGCATAGGAGGCTTTAACGAGGAACAAGCAAGAGAA 876
||||| ||||| || |||||||| ||||| |||||||| || ||||||||| |||||||
Sbjct 848 TCGGTTGTGTTTCTTTGCTTTGGGAGCATGGGAGGCTTCAATAAGGAACAAGTAAGAGAA 907
Query 877 ATGGCCATTGCACTTGAGAGAAGTGGTCACCGCTT-CTTGTGGTCTCTTCGCCGTGCATC 935
|| || || || || ||| ||||||| ||||| || || |||||||| || ||||||||
Sbjct 908 ATCGCAATAGCCCTAGAGCGAAGTGGCCACCGGTTTCTC-TGGTCTCTCCGTCGTGCATC 966
Query 936 TCG-AGATATAGATAAGGAACTTCCCGGAGAATTCAAGAATCTTGAAGAAATTCTCCCGG 994
|| | ||||| ||| |||| ||| |||| || | ||||| || ||| |||||||||
Sbjct 967 TCCTA-ATATATTTAAAGAACCTCCAAGAGAGTTTACTAATCTAGAGGAAGTTCTCCCGG 1025
Query 995 AAGGATTCTTTGATCGGACAAAGGATAAAGG-AAAGGTGATCGGATGGGCTCCACAAGTA 1053
||||||||||||| | || ||||| ||||| |||| |||| |||||||||||||| ||
Sbjct 1026 AAGGATTCTTTGAAAGAACGAAGGAGAAAGGTAAAG-TGATAGGATGGGCTCCACAGGTG 1084
Query 1054 GCCGTGCTGGCTAAGCCAGCAATCGGAGGTTTTGTTACTCATTGCGGGTGGAACTCGATA 1113
|| ||||| || || || || || |||||||| || || || || || ||||| ||||
Sbjct 1085 GCGGTGCTTGCGAATCCGGCTATAGGAGGTTTCGTCACACACTGTGGATGGAATTCGACG 1144
Query 1114 CTCGAGAGTCTTTGGTTCGGTGTTCCTATAGC-GCCATGGCCGTTATACGCTGAGCAGAA 1172
|| |||||||| |||||||||||||| | ||| || ||||||||||||||| || |||||
Sbjct 1145 CTAGAGAGTCTCTGGTTCGGTGTTCCAACAGCTGC-ATGGCCGTTATACGCAGAACAGAA 1203
Query 1173 GTTTAATGCTTTCGTGATGGTGGAGGAGCTTGGTTTGGCAGTGAAGATAAGAAAGTATTG 1232
||| || |||||| ||||||||||||||||||| ||||| ||| ||||||| ||||||||
Sbjct 1204 GTTCAACGCTTTCTTGATGGTGGAGGAGCTTGGATTGGCGGTGGAGATAAGGAAGTATTG 1263
Query 1233 GCGAGGCGATCAGTTGGTGGGAACGGCGACGGTCATAGTGACGGCAGAGGAGATAGAGAG 1292
|||||| ||||| || | |||| | |||| || | |||||||| || ||||||||||
Sbjct 1264 GCGAGGTGATCATTTAGCGGGAGTGCCGACAGTTACGGTGACGGCGGATGAGATAGAGAA 1323
Query 1293 AGGAATCA-GATGTTTGATGGAGCAAGATAGTGACGTGAGGAATAGAGTGAAGGAGATGA 1351
|| ||||| | ||| | ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1324 AGCAATCATG-TGTCTAATGGAGCAAGATAGTGACGTGAGAAAAAGAGTGAAGGAGATGA 1382
Query 1352 GTAAGAAATGTCACATGGCTTTAAAGGATGGTGGCTCGTCTCA-ATCTGCTTTG-AAATT 1409
|| ||||||| ||| ||||||||| ||| ||||| ||||| | || || ||| |||
Sbjct 1383 GTGAGAAATGCCACGTGGCTTTAATGGACGGTGGATCGTCGCGGAT-TGGGTTGCAAAAG 1441
Query 1410 ATTTATTCAAGACGTTACGAAGTATAT 1436
|||||| |||||||||||||| ||||
Sbjct 1442 -TTTATTGAAGACGTTACGAAGAATAT 1467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59192240730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5