BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21810.1
Length=1840
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930146 jgi|Araly1|930146|scaffold_302603.1 1949 0.0
> Ahg930146 jgi|Araly1|930146|scaffold_302603.1
Length=1353
Score = 1949 bits (1055), Expect = 0.0
Identities = 1253/1347 (93%), Gaps = 20/1347 (1%)
Strand=Plus/Plus
Query 250 GTTGT-AATTGGTT--TATACATCATGTCTGGGTCGAGTATGTATAAGACGAAGCTTTGT 306
||||| |||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTTGTAAATTGGTTGGT-TA-ATCATGTCTGGGTCGAGTATGTATAAGACGAAGCTTTGT 58
Query 307 ATTCTGTTCAATAAGACTGGTGATTGTTCGAGGCCGAATTGTACTTTTGCTCATGGAAAT 366
||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 59 ATTCTGTTCAAGAAGACTGGTGATTGTTCTAGGCCGAATTGTTCTTTTGCTCATGGAAAT 118
Query 367 GCTGAGCTTCGTCGTCCTGGCGAATCTTCTTTTACAGG-AA-GACGTCACAATATGGATA 424
|||||||||||||||||||| |||||||| || || || || || | ||| | ||||
Sbjct 119 GCTGAGCTTCGTCGTCCTGGAGAATCTTCATTCACTGGTAATGA--TTTCAA-A--GATA 173
Query 425 GTGACT-TAAGA--GATAGACGTCACAATATGGATAGTGACTTAAGAGATAGACTTGGTA 481
| ||| | ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 GCAACTCTCAGATTGGCAGACGTCACAATATGGATAGTGACTTAAGAGATAGACTTGGTA 233
Query 482 GACAGTTTTCTCCAGAGCGGAGACCTTCCTTAGACAGAAGTGGAAGACGGGTACAAAGGT 541
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 234 GACAGTTTTCTCCAGAGCGGAGACCATCTTTAGACAGAAGTGGAAGACGGGTACAAAGGT 293
Query 542 TTAGTGGACATGACAATTCTATGCCATTTGAGAATCGAAGAGATAAAGACTACAGGGAGA 601
||||||||||||||||| ||| |||||||||||| ||||||||||| || ||||||||||
Sbjct 294 TTAGTGGACATGACAATCCTAGGCCATTTGAGAACCGAAGAGATAACGAGTACAGGGAGA 353
Query 602 ACCGTAGATTTGATGAACGACGTGATTATGCTGGTGGTTTGAAAGTTGGGAATAGGATTG 661
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 354 ACCGTAGATTTGATGAACGACGTAATTATGCTGGTGGTTTGAAAGTTGGGAATAGAATTG 413
Query 662 AAGACAGGGCAGAAGATGGAAGAAATAAGTTTCATGGTTACAATAATGTTCTGGAAGAGC 721
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 414 AAGACAGGGCAGAAGATGGAAGAAATAAGTTTCAGGGTTACAATAATGTTCTAGAGGAGC 473
Query 722 AGTTAAAAGATGTAGAGATGGATGTTAAGATGCTAACTGATGACAAACTACGATTGGAGG 781
|||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 474 AGTTAAAAGACGTAGAGATGGATGTTAAGATGCTTACTGATGACAAACAACGATTGGAGG 533
Query 782 CGTCCGTTGAAAGGAAGGCACATGAAGTAGACATTCTTA-CTTCTAGGATCCAGGAGCTT 840
| |||||||||||||||||||| |||||||||||||| | | ||||||||||| ||||||
Sbjct 534 CTTCCGTTGAAAGGAAGGCACACGAAGTAGACATTCTAAGC-TCTAGGATCCATGAGCTT 592
Query 841 GAGACCCAGTTGGATAGAGAGAAAGATGAATGTAGGAGGATTACTTCAAGCTCGAAGAAA 900
||||| |||||||||||||||||||| |||||||||||||||||||||| | | ||||||
Sbjct 593 GAGACTCAGTTGGATAGAGAGAAAGAGGAATGTAGGAGGATTACTTCAAACACAAAGAAA 652
Query 901 TTTGTGAAAGAATATAACCGTTTCTTGCGGGCACAAGATGATCTAAAGAGGTCAGAAGCC 960
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TTTGTGAAAGAATACAACCGTTTCTTGCGGGCACAAGATGATCTAAAGAGGTCAGAAGCC 712
Query 961 CGTCTTCAGAAATTGGGAAACCAACTTAGTACGTATCTTGCTGGAAGTGAAGGCAATAAT 1020
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 713 CGTCTTCAGAAATTGGGAAACCAACTTAGTACATATCTTGCTGGAAGTGAAGGAAATAAT 772
Query 1021 AGGGATGTAGGCCTGGATATTGTGAGCGATGAAGAGACTAATGGTCGGAATTTGAGAACT 1080
||||||| |||| ||||||||||||| ||||| |||| ||||||||||||||||||||||
Sbjct 773 AGGGATGCAGGCGTGGATATTGTGAGTGATGACGAGAATAATGGTCGGAATTTGAGAACT 832
Query 1081 GCTTGTGATCCACATAACGAGTTGCAGAATACTTCTTCACTGTCCAGGAAAAAGCATTAT 1140
|||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 833 GCTTGTGATCCACAGAATGAGCTGCAGAATACTTCTTCACTGTCCAGGAAAAAGCATTAT 892
Query 1141 GTGGATCAATATACTACGAAAGAACCTGTTGAAGATGGCTTGATAGGgagaggtgaagaa 1200
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 893 GTGGATCAATATACTACGAAAGAACCTGTTGAAGATGGCTTGATAGGAAGAGGTGAAGAA 952
Query 1201 gagaaggtggagaatgagaagaagagaCCACCTTGTTGGAATATGCTTTCTTCAAAATCA 1260
|||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 953 GAGAAGGTGGAGAAGGAGAAGAAGAGACC---TTGTTGGAATATGGTTTCTTCAAAATCA 1009
Query 1261 TATTCTGAAGAAGAAAGTGGAGCGTGGAACGATGAAGACACAATTAACAGGTCCTCGTCA 1320
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1010 TATTCTGAAGAAGAAAGTGGAGCGTGGAACGATGAAGACACAATTAACAAGTCCTCGTCA 1069
Query 1321 AAGGAAGACAATTGGAAAAGAAGAAGGTTCTCTATTGGCACCTCAGCTACCGATAAGGTT 1380
||||||||||| ||||||||||||||| |||||||||||||||| |||| ||||||||
Sbjct 1070 AAGGAAGACAACTGGAAAAGAAGAAGGATCTCTATTGGCACCTCCTCTACTGATAAGGTA 1129
Query 1381 ATATTGTCTACGAGTATGGCAGCTCGGGAATTTGATGATGTTGCAGAATCTGAGGAAGAG 1440
|||| ||||||||| |||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1130 ATATCGTCTACGAGCATGGCAGCTCGGGAATATGATGATGATGCAGAATCTGAGGAAGAG 1189
Query 1441 AATCCCGAAGCAGCCAACGGCTCTCCTCTCATATCTCTTCCTCCACCCCCACCTTTCAGA 1500
||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1190 AATCCCGAAGCAGCCAAAGGCTCTCCTCTCATATCTCTCCCTGCACCCCCACCTTTCAGA 1249
Query 1501 GATGCCCATGTTCAGAGAGACGAGGATGATGTAAACGGTGATGTGATGGAACAGAAGAAA 1560
||||||||||||||| | |||||||||||||||| || ||||||||||||| ||||||||
Sbjct 1250 GATGCCCATGTTCAGGGTGACGAGGATGATGTAAGCGTTGATGTGATGGAAGAGAAGAAA 1309
Query 1561 GCCTATGACGATGATTCCGTCTGATCA 1587
||| |||| ||||| ||||||||||||
Sbjct 1310 GCCAATGAAGATGACTCCGTCTGATCA 1336
Score = 69.4 bits (37), Expect = 9e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 406 AGACGTCACAATATGGATAGTGACTTAAGAGATAGAC 442
|||||||||||||||||||||||||||||||||||||
Sbjct 191 AGACGTCACAATATGGATAGTGACTTAAGAGATAGAC 227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69095704430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5