BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21820.1
Length=1677
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930147 jgi|Araly1|930147|scaffold_302604.1 2158 0.0
Ahg930148 jgi|Araly1|930148|scaffold_302605.1 1391 0.0
Ahg894800 jgi|Araly1|894800|Al_scaffold_0006_2796 228 1e-58
Ahg347252 jgi|Araly1|347252|fgenesh1_pg.C_scaffold_5000644 228 1e-58
Ahg946013 jgi|Araly1|946013|scaffold_702242.1 207 2e-52
Ahg946011 jgi|Araly1|946011|scaffold_702240.1 113 4e-24
> Ahg930147 jgi|Araly1|930147|scaffold_302604.1
Length=1457
Score = 2158 bits (1168), Expect = 0.0
Identities = 1330/1408 (94%), Gaps = 11/1408 (1%)
Strand=Plus/Plus
Query 104 TCGCCGCTCTTCTTGCTCCGCTTCCAACTCCCCAACTTCAGGAGTATTTCAACAAGCTTA 163
|||||||||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 52 TCGCCGCTCTTCTTTCTCCGCTTCCAACTCTCCAACAGCAGGAATATTTCAACAAGCTTA 111
Query 164 TAACTAGTAGAAGATGCAATGGAATTGAAGTGAAA-AACAATGGAACCATTGGAAAAGGT 222
|||||||||||||||||||||| || ||||||||| | |||| ||||||||||||||||
Sbjct 112 TAACTAGTAGAAGATGCAATGGCATCGAAGTGAAACTA-AATGAAACCATTGGAAAAGGT 170
Query 223 GTTTATGCAAATTCAGAGTTTGACGAAGATGAACTCATTTTGAAAGATGAGATTCTTGTT 282
||||||| ||||||||||||| | |||||||||||||||||||||||| |||||||||||
Sbjct 171 GTTTATGTAAATTCAGAGTTTCAAGAAGATGAACTCATTTTGAAAGATCAGATTCTTGTT 230
Query 283 GGTATCCAACATTCTTCCAACAAGGTGGATTGTTTAGTTTGCAGTTTTTGTTTCCGGTTC 342
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 231 GGTATCCAACATTCTTCCAACAAGGTGGATTGTTTGGTTTGTAGTTTTTGTTTCCGGTTC 290
Query 343 ATTGGATCAATCGAGAAACAAATCGGCAGGAAACTCTATTTCAAGAATCTCGGTGTCTCT 402
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| |||
Sbjct 291 GTTGGATCGATCGAGAAACAAATCGGCCGGAAACTCTATTTTAAGAATCTCGGTGTTTCT 350
Query 403 GGTTGTTGTGACGACGATTCATC------CGAAGAAGATGAATGTGTGAAGTACAATGGA 456
||||||||||||| ||||||||| || ||||||||||||||||||||||||||||
Sbjct 351 GGTTGTTGTGACGGCGATTCATCTGAAAGCGGAGAAGATGAATGTGTGAAGTACAATGGA 410
Query 457 AATGAGGAACAATGTGGTGGAAGCAGTTCAAGCCATAATACTCTTCCAGAAGGAGTTGTT 516
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 411 AATGAGGAACAATGTGGTGGAAGCAGTTCAAGCCATAATACTCTTCCGGAAGGAGTTGTT 470
Query 517 AGTTCTTTGATGAATGGTGAAATGGCATTGCCGCATACTGATAAGTTTCCTTTGCCGTCG 576
||||||||||||||||| ||||||||||||||| | ||||||| |||||||||||| |||
Sbjct 471 AGTTCTTTGATGAATGGCGAAATGGCATTGCCGTACACTGATATGTTTCCTTTGCCTTCG 530
Query 577 CCTCTTTCGTGTCCTGGAGGATGTCAGGAGGCTTTCTACTGCAGTGAATCATGCGCAGCG 636
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 531 CCTCTTTCGTGTCCTGGAGGATGTCAGGAGGCTTTCTACTGTAGTGAATCATGCGCAGAG 590
Query 637 GCAGATTGGGAGAGTTCTCATTCCTTACTTTGTACTGGTGAGAGGTCTGAATC-AATATC 695
||||||||||||||||||||||| |||||||| |||||||||| ||||||||| ||| ||
Sbjct 591 GCAGATTGGGAGAGTTCTCATTCTTTACTTTGCACTGGTGAGAAGTCTGAATCAAAT-TC 649
Query 696 TAGAGAGGCGCTTGGAGAGTTTATTAAACATGCTAATGATACCAATGATATTTTTCTCCT 755
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 650 TAGAGAGGCGCTTGGAGAGTTTATAAAACATGCTAATGATACAAATGATATTTTTCTCCT 709
Query 756 GGCTGCGAAGGCAATCGCCTTTACCATTCTAAGGTACAGGAAACTGAAAGCAGAACATGT 815
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 GGCTGCCAAGGCGATTGCCTTTACCATTCTAAGGTACAGGAAACTGAAAGCAGAACATGT 769
Query 816 GGACAAAAAAGCGAAACAGAGTGAGCCAAAGCAGTCGCTTCTCTTGGAAGCATGGAAACC 875
||||||||||| ||||| ||||||||||||||||| || |||||||| |||||||||||
Sbjct 770 AGACAAAAAAGCAAAACAAAGTGAGCCAAAGCAGTCCCTACTCTTGGAGGCATGGAAACC 829
Query 876 AGTATCGATTGGATACAAAAGAAGGTGGTGGGACTGCATTGCATTGCCAGATGATGTTGA 935
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 830 AGTATCGATTGGATACAAAAGAAGGTGGTGGGACTGCATCGCATTGCCAGATGATGTTGA 889
Query 936 TCCTACTGATGAAGGAGCCTTCAGGATGCAAATAAAGAACCTTGCGTGTACGTCTTTGGA 995
|| | ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 890 TCTTTCTGATGAAGGAGCCTTCAGGATGCAGATAAAGAATCTTGCATGTACGTCTTTGGA 949
Query 996 GCTCCTGAAGATAGCCATATTTGACAAAGAATGTGAAGCCCTGTTCTCCCTCGAAATCTA 1055
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 GCTCCTGAAGACAGCCATATTTGACAAAGAATGTGAAGCCCTGTTCTCCCTCGAAATCTA 1009
Query 1056 TGGGAATATCATCGGCATGTTTGAGCTGAATAACCTAGACTTGGTGGTAGCATCACCAGT 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 TGGGAATATCATCGGCATGTTTGAGCTGAATAACCTAGACTTGGTGGTAGCATCACCAGT 1069
Query 1116 AGAGGACTATTTCTTGTATATTGATGATCTTCCTGATGCAGAAAAGGAAGAAACCGAGGA 1175
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1070 AGAGGACTATTTCTTGTATATTGATGATCTTCCTGATGCTGAAAAGGAAGAAGCCGAGGA 1129
Query 1176 AATCACAAGACCGTTTCTAGATGCTCTTGGTGATGAGTACTCGGACTGTTGCCAAGGAAC 1235
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 AATCACGAGACCGTTTCTAGATGCTCTTGGTGATGAGTACTCGGACTGTTGCCAAGGAAC 1189
Query 1236 GGCCTTCTTCCCTCTGCAAAGCTGTATGAACCATTCTTGTTGCCCTAATGCAAAAGCCTT 1295
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1190 GGCCTTCTTCCCTCTGCAGAGCTGTATGAATCATTCTTGTTGCCCTAATGCAAAAGCCTT 1249
Query 1296 CAAAAGAGAAGAGGACAGAGACGGACAAGCAGTGATAATTGCATTAAGACGCATCAGCAA 1355
||||||||||||||||| ||||||||||||||| || ||||| ||||||||||||||| |
Sbjct 1250 CAAAAGAGAAGAGGACAAAGACGGACAAGCAGTTATTATTGCGTTAAGACGCATCAGCGA 1309
Query 1356 GAACGAAGAGGTGACGATTTCATATATCGACGAGGAGCTTCCATACAAAGAGAGACAAGC 1415
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1310 GAACGAAGAGGTGACGATTTCATATATCGACGAGGAGCTTCCGTACAAAGAGAGACAAGC 1369
Query 1416 ATTACTTGCAGACTATGGTTTCAGCTGCAAGTGCTCTAAGTGTCTTGAAGATTCTTCATC 1475
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1370 ATTGCTTGCAGACTATGGTTTCAGCTGCAAGTGCTCTAAGTGTCTGGAAGATTCTTCAGC 1429
Query 1476 AATTTGAAGCATAATTTTT-GTTTTCAA 1502
| |||||||| |||||||| ||||||||
Sbjct 1430 AGTTTGAAGCCTAATTTTTTGTTTTCAA 1457
> Ahg930148 jgi|Araly1|930148|scaffold_302605.1
Length=1064
Score = 1391 bits (753), Expect = 0.0
Identities = 880/941 (94%), Gaps = 10/941 (1%)
Strand=Plus/Plus
Query 104 TCGCCGCTCTTCTTGCTCCGCTTCCAACTCCCCAACTTCAGGAGTATTTCAACAAGCTTA 163
|||||||||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 52 TCGCCGCTCTTCTTTCTCCGCTTCCAACTCTCCAACAGCAGGAATATTTCAACAAGCTTA 111
Query 164 TAACTAGTAGAAGATGCAATGGAATTGAAGTGAAA-AACAATGGAACCATTGGAAAAGGT 222
|||||||||||||||||||||| || ||||||||| | |||| ||||||||||||||||
Sbjct 112 TAACTAGTAGAAGATGCAATGGCATCGAAGTGAAACTA-AATGAAACCATTGGAAAAGGT 170
Query 223 GTTTATGCAAATTCAGAGTTTGACGAAGATGAACTCATTTTGAAAGATGAGATTCTTGTT 282
||||||| ||||||||||||| | |||||||||||||||||||||||| |||||||||||
Sbjct 171 GTTTATGTAAATTCAGAGTTTCAAGAAGATGAACTCATTTTGAAAGATCAGATTCTTGTT 230
Query 283 GGTATCCAACATTCTTCCAACAAGGTGGATTGTTTAGTTTGCAGTTTTTGTTTCCGGTTC 342
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 231 GGTATCCAACATTCTTCCAACAAGGTGGATTGTTTGGTTTGTAGTTTTTGTTTCCGGTTC 290
Query 343 ATTGGATCAATCGAGAAACAAATCGGCAGGAAACTCTATTTCAAGAATCTCGGTGTCTCT 402
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| |||
Sbjct 291 GTTGGATCGATCGAGAAACAAATCGGCCGGAAACTCTATTTTAAGAATCTCGGTGTTTCT 350
Query 403 GGTTGTTGTGACGACGATTCATC------CGAAGAAGATGAATGTGTGAAGTACAATGGA 456
||||||||||||| ||||||||| || ||||||||||||||||||||||||||||
Sbjct 351 GGTTGTTGTGACGGCGATTCATCTGAAAGCGGAGAAGATGAATGTGTGAAGTACAATGGA 410
Query 457 AATGAGGAACAATGTGGTGGAAGCAGTTCAAGCCATAATACTCTTCCAGAAGGAGTTGTT 516
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 411 AATGAGGAACAATGTGGTGGAAGCAGTTCAAGCCATAATACTCTTCCGGAAGGAGTTGTT 470
Query 517 AGTTCTTTGATGAATGGTGAAATGGCATTGCCGCATACTGATAAGTTTCCTTTGCCGTCG 576
||||||||||||||||| ||||||||||||||| | ||||||| |||||||||||| |||
Sbjct 471 AGTTCTTTGATGAATGGCGAAATGGCATTGCCGTACACTGATATGTTTCCTTTGCCTTCG 530
Query 577 CCTCTTTCGTGTCCTGGAGGATGTCAGGAGGCTTTCTACTGCAGTGAATCATGCGCAGCG 636
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 531 CCTCTTTCGTGTCCTGGAGGATGTCAGGAGGCTTTCTACTGTAGTGAATCATGCGCAGAG 590
Query 637 GCAGATTGGGAGAGTTCTCATTCCTTACTTTGTACTGGTGAGAGGTCTGAATCAATAT-C 695
||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| || |
Sbjct 591 GCAGATTGGGAGAGTTCTCATTCTTTACTTTGCACTGGTGAGAAGTCTGAATCAA-ATTC 649
Query 696 TAGAGAGGCGCTTGGAGAGTTTATTAAACATGCTAATGATACCAATGATATTTTTCTCCT 755
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 650 TAGAGAGGCGCTTGGAGAGTTTATAAAACATGCTAATGATACAAATGATATTTTTCTCCT 709
Query 756 GGCTGCGAAGGCAATCGCCTTTACCATTCTAAGGTACAGGAAACTGAAAGCAGAACATGT 815
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 GGCTGCCAAGGCGATTGCCTTTACCATTCTAAGGTACAGGAAACTGAAAGCAGAACATGT 769
Query 816 GGACAAAAAAGCGAAACAGAGTGAGCCAAAGCAGTCGCTTCTCTTGGAAGCATGGAAACC 875
||||||||||| ||||| ||||||||||||||||| || |||||||| |||||||||||
Sbjct 770 AGACAAAAAAGCAAAACAAAGTGAGCCAAAGCAGTCCCTACTCTTGGAGGCATGGAAACC 829
Query 876 AGTATCGATTGGATACAAAAGAAGGTGGTGGGACTGCATTGCATTGCCAGATGATGTTGA 935
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 830 AGTATCGATTGGATACAAAAGAAGGTGGTGGGACTGCATCGCATTGCCAGATGATGTTGA 889
Query 936 TCCTACTGATGAAGGAGCCTTCAGGATGCAAATAAAGAACCTTGCGTGTACGTCTTTGGA 995
|| | ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 890 TCTTTCTGATGAAGGAGCCTTCAGGATGCAGATAAAGAATCTTGCATGTACGTCTTTGGA 949
Query 996 GCTCCTGAAGATAGCCATATTTGACAAAGAATGTGAAGCCC 1036
||||||||||| |||||||||||||||||||||||||||||
Sbjct 950 GCTCCTGAAGACAGCCATATTTGACAAAGAATGTGAAGCCC 990
> Ahg894800 jgi|Araly1|894800|Al_scaffold_0006_2796
Length=582
Score = 228 bits (123), Expect = 1e-58
Identities = 145/156 (93%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 1161 GGAAGAAACCGAGGAAATCACAAGACCGTTTCTAGATGCTCTTGGTGATGAGTACTCGGA 1220
||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| ||||
Sbjct 174 GGAAGAAGCCGAGGAAATCACGAGACTGTTTCTAGATGCTCTTGGTGATGAGTATTCGGT 233
Query 1221 CTGTTGCCAAGGAACGGCCTTCTTCCCTCTGCAAAGCTGTATGAACCATTCTTGTTGCCC 1280
|| ||||||||||||||| ||||||||||| || ||||||||||||||||||||| ||||
Sbjct 234 CTATTGCCAAGGAACGGCTTTCTTCCCTCTACAGAGCTGTATGAACCATTCTTGTCGCCC 293
Query 1281 TAATGCAAAAGCCTTCAAAAGAGAAGAGGACAGAGA 1316
|||||||||||||||||||||||||||||||| |||
Sbjct 294 TAATGCAAAAGCCTTCAAAAGAGAAGAGGACAAAGA 329
Score = 187 bits (101), Expect = 2e-46
Identities = 133/149 (89%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 839 AGCCAAAGCAGTCGCTTCTCTTGGAAGCATGGAAACCAGTATCGATTGGATACAAAAGAA 898
|||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 26 AGCCAAAGAAGTCGCTACTCTTGGAGGCATGGAAACCAGTATCGATTGGATACAAAAGAA 85
Query 899 GGTGGTGGGACTGCATTGCATTGCCAGATGATGTTGATCCTACTGATGAAGGAGCCTTCA 958
|||||||||||| ||| |||||||||||||||||| ||||| |||||||||||| || |
Sbjct 86 GGTGGTGGGACTACATCGCATTGCCAGATGATGTTCATCCTTTTGATGAAGGAGCGTTGA 145
Query 959 GGATGCAAATAAAGAACCTTGCGTGTACG 987
||||| | || ||||| |||| ||||||
Sbjct 146 GGATGGAGATTAAGAATTTTGCATGTACG 174
> Ahg347252 jgi|Araly1|347252|fgenesh1_pg.C_scaffold_5000644
Length=678
Score = 228 bits (123), Expect = 1e-58
Identities = 145/156 (93%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 1161 GGAAGAAACCGAGGAAATCACAAGACCGTTTCTAGATGCTCTTGGTGATGAGTACTCGGA 1220
||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| ||||
Sbjct 174 GGAAGAAGCCGAGGAAATCACGAGACTGTTTCTAGATGCTCTTGGTGATGAGTATTCGGT 233
Query 1221 CTGTTGCCAAGGAACGGCCTTCTTCCCTCTGCAAAGCTGTATGAACCATTCTTGTTGCCC 1280
|| ||||||||||||||| ||||||||||| || ||||||||||||||||||||| ||||
Sbjct 234 CTATTGCCAAGGAACGGCTTTCTTCCCTCTACAGAGCTGTATGAACCATTCTTGTCGCCC 293
Query 1281 TAATGCAAAAGCCTTCAAAAGAGAAGAGGACAGAGA 1316
|||||||||||||||||||||||||||||||| |||
Sbjct 294 TAATGCAAAAGCCTTCAAAAGAGAAGAGGACAAAGA 329
Score = 193 bits (104), Expect = 4e-48
Identities = 134/149 (90%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 839 AGCCAAAGCAGTCGCTTCTCTTGGAAGCATGGAAACCAGTATCGATTGGATACAAAAGAA 898
|||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 26 AGCCAAAGAAGTCGCTACTCTTGGAGGCATGGAAACCAGTATCGATTGGATACAAAAGAA 85
Query 899 GGTGGTGGGACTGCATTGCATTGCCAGATGATGTTGATCCTACTGATGAAGGAGCCTTCA 958
|||||||||||||||| |||||||||||||||||| ||||| |||||||||||| || |
Sbjct 86 GGTGGTGGGACTGCATCGCATTGCCAGATGATGTTCATCCTTTTGATGAAGGAGCGTTGA 145
Query 959 GGATGCAAATAAAGAACCTTGCGTGTACG 987
||||| | || ||||| |||| ||||||
Sbjct 146 GGATGGAGATTAAGAATTTTGCATGTACG 174
> Ahg946013 jgi|Araly1|946013|scaffold_702242.1
Length=331
Score = 207 bits (112), Expect = 2e-52
Identities = 144/160 (90%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 828 GAAACAGAGTGAGCCAAAGCAGTCGCTTCTCTTGGAAGCATGGAAACCAGTATCGATTGG 887
|||||||| | |||||||||||||||| | |||||| |||||||||||||||||||||||
Sbjct 77 GAAACAGATTAAGCCAAAGCAGTCGCTACACTTGGAGGCATGGAAACCAGTATCGATTGG 136
Query 888 ATACAAAAGAAGGTGGTGGGACTGCATTGCATTGCCAGATGATGTTGATCCTACTGATGA 947
||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||
Sbjct 137 ATACAAAAGAAGGTGGTGGGACTGCATCGCATTGCCAGATGATGTTCATCCTTTTGATGA 196
Query 948 AGGAGCCTTCAGGATGCAAATAAAGAACCTTGCGTGTACG 987
|||||| || |||||| | || ||||| |||||||||||
Sbjct 197 AGGAGCGTTGAGGATGGAGATTAAGAATTTTGCGTGTACG 236
Score = 117 bits (63), Expect = 3e-25
Identities = 69/72 (96%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 1161 GGAAGAAACCGAGGAAATCACAAGACCGTTTCTAGATGCTCTTGGTGATGAGTACTCGGA 1220
||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 236 GGAAGAAGCCGAGGAAATCACGAGACTGTTTCTAGATGCTCTTGGTGATGAGTACTCGGA 295
Query 1221 CTGTTGCCAAGG 1232
||||||||||||
Sbjct 296 CTGTTGCCAAGG 307
> Ahg946011 jgi|Araly1|946011|scaffold_702240.1
Length=235
Score = 113 bits (61), Expect = 4e-24
Identities = 67/70 (96%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 1240 TTCTTCCCTCTGCAAAGCTGTATGAACCATTCTTGTTGCCCTAATGCAAAAGCCTTCAAA 1299
|||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 3 TTCTTCCCTCTGCAGAGCTGTATGAACCATTCTTGTTGCCCTAATGCCAAATCCTTCAAA 62
Query 1300 AGAGAAGAGG 1309
||||||||||
Sbjct 63 AGAGAAGAGG 72
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62886994495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5