BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21820.1 Length=1677 Score E Sequences producing significant alignments: (Bits) Value Ahg930147 jgi|Araly1|930147|scaffold_302604.1 2158 0.0 Ahg930148 jgi|Araly1|930148|scaffold_302605.1 1391 0.0 Ahg894800 jgi|Araly1|894800|Al_scaffold_0006_2796 228 1e-58 Ahg347252 jgi|Araly1|347252|fgenesh1_pg.C_scaffold_5000644 228 1e-58 Ahg946013 jgi|Araly1|946013|scaffold_702242.1 207 2e-52 Ahg946011 jgi|Araly1|946011|scaffold_702240.1 113 4e-24 > Ahg930147 jgi|Araly1|930147|scaffold_302604.1 Length=1457 Score = 2158 bits (1168), Expect = 0.0 Identities = 1330/1408 (94%), Gaps = 11/1408 (1%) Strand=Plus/Plus Query 104 TCGCCGCTCTTCTTGCTCCGCTTCCAACTCCCCAACTTCAGGAGTATTTCAACAAGCTTA 163 |||||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||||| Sbjct 52 TCGCCGCTCTTCTTTCTCCGCTTCCAACTCTCCAACAGCAGGAATATTTCAACAAGCTTA 111 Query 164 TAACTAGTAGAAGATGCAATGGAATTGAAGTGAAA-AACAATGGAACCATTGGAAAAGGT 222 |||||||||||||||||||||| || ||||||||| | |||| |||||||||||||||| Sbjct 112 TAACTAGTAGAAGATGCAATGGCATCGAAGTGAAACTA-AATGAAACCATTGGAAAAGGT 170 Query 223 GTTTATGCAAATTCAGAGTTTGACGAAGATGAACTCATTTTGAAAGATGAGATTCTTGTT 282 ||||||| ||||||||||||| | |||||||||||||||||||||||| ||||||||||| Sbjct 171 GTTTATGTAAATTCAGAGTTTCAAGAAGATGAACTCATTTTGAAAGATCAGATTCTTGTT 230 Query 283 GGTATCCAACATTCTTCCAACAAGGTGGATTGTTTAGTTTGCAGTTTTTGTTTCCGGTTC 342 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 231 GGTATCCAACATTCTTCCAACAAGGTGGATTGTTTGGTTTGTAGTTTTTGTTTCCGGTTC 290 Query 343 ATTGGATCAATCGAGAAACAAATCGGCAGGAAACTCTATTTCAAGAATCTCGGTGTCTCT 402 ||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| ||| Sbjct 291 GTTGGATCGATCGAGAAACAAATCGGCCGGAAACTCTATTTTAAGAATCTCGGTGTTTCT 350 Query 403 GGTTGTTGTGACGACGATTCATC------CGAAGAAGATGAATGTGTGAAGTACAATGGA 456 ||||||||||||| ||||||||| || |||||||||||||||||||||||||||| Sbjct 351 GGTTGTTGTGACGGCGATTCATCTGAAAGCGGAGAAGATGAATGTGTGAAGTACAATGGA 410 Query 457 AATGAGGAACAATGTGGTGGAAGCAGTTCAAGCCATAATACTCTTCCAGAAGGAGTTGTT 516 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 411 AATGAGGAACAATGTGGTGGAAGCAGTTCAAGCCATAATACTCTTCCGGAAGGAGTTGTT 470 Query 517 AGTTCTTTGATGAATGGTGAAATGGCATTGCCGCATACTGATAAGTTTCCTTTGCCGTCG 576 ||||||||||||||||| ||||||||||||||| | ||||||| |||||||||||| ||| Sbjct 471 AGTTCTTTGATGAATGGCGAAATGGCATTGCCGTACACTGATATGTTTCCTTTGCCTTCG 530 Query 577 CCTCTTTCGTGTCCTGGAGGATGTCAGGAGGCTTTCTACTGCAGTGAATCATGCGCAGCG 636 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 531 CCTCTTTCGTGTCCTGGAGGATGTCAGGAGGCTTTCTACTGTAGTGAATCATGCGCAGAG 590 Query 637 GCAGATTGGGAGAGTTCTCATTCCTTACTTTGTACTGGTGAGAGGTCTGAATC-AATATC 695 ||||||||||||||||||||||| |||||||| |||||||||| ||||||||| ||| || Sbjct 591 GCAGATTGGGAGAGTTCTCATTCTTTACTTTGCACTGGTGAGAAGTCTGAATCAAAT-TC 649 Query 696 TAGAGAGGCGCTTGGAGAGTTTATTAAACATGCTAATGATACCAATGATATTTTTCTCCT 755 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 650 TAGAGAGGCGCTTGGAGAGTTTATAAAACATGCTAATGATACAAATGATATTTTTCTCCT 709 Query 756 GGCTGCGAAGGCAATCGCCTTTACCATTCTAAGGTACAGGAAACTGAAAGCAGAACATGT 815 |||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 710 GGCTGCCAAGGCGATTGCCTTTACCATTCTAAGGTACAGGAAACTGAAAGCAGAACATGT 769 Query 816 GGACAAAAAAGCGAAACAGAGTGAGCCAAAGCAGTCGCTTCTCTTGGAAGCATGGAAACC 875 ||||||||||| ||||| ||||||||||||||||| || |||||||| ||||||||||| Sbjct 770 AGACAAAAAAGCAAAACAAAGTGAGCCAAAGCAGTCCCTACTCTTGGAGGCATGGAAACC 829 Query 876 AGTATCGATTGGATACAAAAGAAGGTGGTGGGACTGCATTGCATTGCCAGATGATGTTGA 935 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 830 AGTATCGATTGGATACAAAAGAAGGTGGTGGGACTGCATCGCATTGCCAGATGATGTTGA 889 Query 936 TCCTACTGATGAAGGAGCCTTCAGGATGCAAATAAAGAACCTTGCGTGTACGTCTTTGGA 995 || | ||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| Sbjct 890 TCTTTCTGATGAAGGAGCCTTCAGGATGCAGATAAAGAATCTTGCATGTACGTCTTTGGA 949 Query 996 GCTCCTGAAGATAGCCATATTTGACAAAGAATGTGAAGCCCTGTTCTCCCTCGAAATCTA 1055 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 950 GCTCCTGAAGACAGCCATATTTGACAAAGAATGTGAAGCCCTGTTCTCCCTCGAAATCTA 1009 Query 1056 TGGGAATATCATCGGCATGTTTGAGCTGAATAACCTAGACTTGGTGGTAGCATCACCAGT 1115 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1010 TGGGAATATCATCGGCATGTTTGAGCTGAATAACCTAGACTTGGTGGTAGCATCACCAGT 1069 Query 1116 AGAGGACTATTTCTTGTATATTGATGATCTTCCTGATGCAGAAAAGGAAGAAACCGAGGA 1175 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 1070 AGAGGACTATTTCTTGTATATTGATGATCTTCCTGATGCTGAAAAGGAAGAAGCCGAGGA 1129 Query 1176 AATCACAAGACCGTTTCTAGATGCTCTTGGTGATGAGTACTCGGACTGTTGCCAAGGAAC 1235 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1130 AATCACGAGACCGTTTCTAGATGCTCTTGGTGATGAGTACTCGGACTGTTGCCAAGGAAC 1189 Query 1236 GGCCTTCTTCCCTCTGCAAAGCTGTATGAACCATTCTTGTTGCCCTAATGCAAAAGCCTT 1295 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1190 GGCCTTCTTCCCTCTGCAGAGCTGTATGAATCATTCTTGTTGCCCTAATGCAAAAGCCTT 1249 Query 1296 CAAAAGAGAAGAGGACAGAGACGGACAAGCAGTGATAATTGCATTAAGACGCATCAGCAA 1355 ||||||||||||||||| ||||||||||||||| || ||||| ||||||||||||||| | Sbjct 1250 CAAAAGAGAAGAGGACAAAGACGGACAAGCAGTTATTATTGCGTTAAGACGCATCAGCGA 1309 Query 1356 GAACGAAGAGGTGACGATTTCATATATCGACGAGGAGCTTCCATACAAAGAGAGACAAGC 1415 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1310 GAACGAAGAGGTGACGATTTCATATATCGACGAGGAGCTTCCGTACAAAGAGAGACAAGC 1369 Query 1416 ATTACTTGCAGACTATGGTTTCAGCTGCAAGTGCTCTAAGTGTCTTGAAGATTCTTCATC 1475 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 1370 ATTGCTTGCAGACTATGGTTTCAGCTGCAAGTGCTCTAAGTGTCTGGAAGATTCTTCAGC 1429 Query 1476 AATTTGAAGCATAATTTTT-GTTTTCAA 1502 | |||||||| |||||||| |||||||| Sbjct 1430 AGTTTGAAGCCTAATTTTTTGTTTTCAA 1457 > Ahg930148 jgi|Araly1|930148|scaffold_302605.1 Length=1064 Score = 1391 bits (753), Expect = 0.0 Identities = 880/941 (94%), Gaps = 10/941 (1%) Strand=Plus/Plus Query 104 TCGCCGCTCTTCTTGCTCCGCTTCCAACTCCCCAACTTCAGGAGTATTTCAACAAGCTTA 163 |||||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||||| Sbjct 52 TCGCCGCTCTTCTTTCTCCGCTTCCAACTCTCCAACAGCAGGAATATTTCAACAAGCTTA 111 Query 164 TAACTAGTAGAAGATGCAATGGAATTGAAGTGAAA-AACAATGGAACCATTGGAAAAGGT 222 |||||||||||||||||||||| || ||||||||| | |||| |||||||||||||||| Sbjct 112 TAACTAGTAGAAGATGCAATGGCATCGAAGTGAAACTA-AATGAAACCATTGGAAAAGGT 170 Query 223 GTTTATGCAAATTCAGAGTTTGACGAAGATGAACTCATTTTGAAAGATGAGATTCTTGTT 282 ||||||| ||||||||||||| | |||||||||||||||||||||||| ||||||||||| Sbjct 171 GTTTATGTAAATTCAGAGTTTCAAGAAGATGAACTCATTTTGAAAGATCAGATTCTTGTT 230 Query 283 GGTATCCAACATTCTTCCAACAAGGTGGATTGTTTAGTTTGCAGTTTTTGTTTCCGGTTC 342 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 231 GGTATCCAACATTCTTCCAACAAGGTGGATTGTTTGGTTTGTAGTTTTTGTTTCCGGTTC 290 Query 343 ATTGGATCAATCGAGAAACAAATCGGCAGGAAACTCTATTTCAAGAATCTCGGTGTCTCT 402 ||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| ||| Sbjct 291 GTTGGATCGATCGAGAAACAAATCGGCCGGAAACTCTATTTTAAGAATCTCGGTGTTTCT 350 Query 403 GGTTGTTGTGACGACGATTCATC------CGAAGAAGATGAATGTGTGAAGTACAATGGA 456 ||||||||||||| ||||||||| || |||||||||||||||||||||||||||| Sbjct 351 GGTTGTTGTGACGGCGATTCATCTGAAAGCGGAGAAGATGAATGTGTGAAGTACAATGGA 410 Query 457 AATGAGGAACAATGTGGTGGAAGCAGTTCAAGCCATAATACTCTTCCAGAAGGAGTTGTT 516 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 411 AATGAGGAACAATGTGGTGGAAGCAGTTCAAGCCATAATACTCTTCCGGAAGGAGTTGTT 470 Query 517 AGTTCTTTGATGAATGGTGAAATGGCATTGCCGCATACTGATAAGTTTCCTTTGCCGTCG 576 ||||||||||||||||| ||||||||||||||| | ||||||| |||||||||||| ||| Sbjct 471 AGTTCTTTGATGAATGGCGAAATGGCATTGCCGTACACTGATATGTTTCCTTTGCCTTCG 530 Query 577 CCTCTTTCGTGTCCTGGAGGATGTCAGGAGGCTTTCTACTGCAGTGAATCATGCGCAGCG 636 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 531 CCTCTTTCGTGTCCTGGAGGATGTCAGGAGGCTTTCTACTGTAGTGAATCATGCGCAGAG 590 Query 637 GCAGATTGGGAGAGTTCTCATTCCTTACTTTGTACTGGTGAGAGGTCTGAATCAATAT-C 695 ||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| || | Sbjct 591 GCAGATTGGGAGAGTTCTCATTCTTTACTTTGCACTGGTGAGAAGTCTGAATCAA-ATTC 649 Query 696 TAGAGAGGCGCTTGGAGAGTTTATTAAACATGCTAATGATACCAATGATATTTTTCTCCT 755 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 650 TAGAGAGGCGCTTGGAGAGTTTATAAAACATGCTAATGATACAAATGATATTTTTCTCCT 709 Query 756 GGCTGCGAAGGCAATCGCCTTTACCATTCTAAGGTACAGGAAACTGAAAGCAGAACATGT 815 |||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 710 GGCTGCCAAGGCGATTGCCTTTACCATTCTAAGGTACAGGAAACTGAAAGCAGAACATGT 769 Query 816 GGACAAAAAAGCGAAACAGAGTGAGCCAAAGCAGTCGCTTCTCTTGGAAGCATGGAAACC 875 ||||||||||| ||||| ||||||||||||||||| || |||||||| ||||||||||| Sbjct 770 AGACAAAAAAGCAAAACAAAGTGAGCCAAAGCAGTCCCTACTCTTGGAGGCATGGAAACC 829 Query 876 AGTATCGATTGGATACAAAAGAAGGTGGTGGGACTGCATTGCATTGCCAGATGATGTTGA 935 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 830 AGTATCGATTGGATACAAAAGAAGGTGGTGGGACTGCATCGCATTGCCAGATGATGTTGA 889 Query 936 TCCTACTGATGAAGGAGCCTTCAGGATGCAAATAAAGAACCTTGCGTGTACGTCTTTGGA 995 || | ||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| Sbjct 890 TCTTTCTGATGAAGGAGCCTTCAGGATGCAGATAAAGAATCTTGCATGTACGTCTTTGGA 949 Query 996 GCTCCTGAAGATAGCCATATTTGACAAAGAATGTGAAGCCC 1036 ||||||||||| ||||||||||||||||||||||||||||| Sbjct 950 GCTCCTGAAGACAGCCATATTTGACAAAGAATGTGAAGCCC 990 > Ahg894800 jgi|Araly1|894800|Al_scaffold_0006_2796 Length=582 Score = 228 bits (123), Expect = 1e-58 Identities = 145/156 (93%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 1161 GGAAGAAACCGAGGAAATCACAAGACCGTTTCTAGATGCTCTTGGTGATGAGTACTCGGA 1220 ||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| |||| Sbjct 174 GGAAGAAGCCGAGGAAATCACGAGACTGTTTCTAGATGCTCTTGGTGATGAGTATTCGGT 233 Query 1221 CTGTTGCCAAGGAACGGCCTTCTTCCCTCTGCAAAGCTGTATGAACCATTCTTGTTGCCC 1280 || ||||||||||||||| ||||||||||| || ||||||||||||||||||||| |||| Sbjct 234 CTATTGCCAAGGAACGGCTTTCTTCCCTCTACAGAGCTGTATGAACCATTCTTGTCGCCC 293 Query 1281 TAATGCAAAAGCCTTCAAAAGAGAAGAGGACAGAGA 1316 |||||||||||||||||||||||||||||||| ||| Sbjct 294 TAATGCAAAAGCCTTCAAAAGAGAAGAGGACAAAGA 329 Score = 187 bits (101), Expect = 2e-46 Identities = 133/149 (89%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 839 AGCCAAAGCAGTCGCTTCTCTTGGAAGCATGGAAACCAGTATCGATTGGATACAAAAGAA 898 |||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 26 AGCCAAAGAAGTCGCTACTCTTGGAGGCATGGAAACCAGTATCGATTGGATACAAAAGAA 85 Query 899 GGTGGTGGGACTGCATTGCATTGCCAGATGATGTTGATCCTACTGATGAAGGAGCCTTCA 958 |||||||||||| ||| |||||||||||||||||| ||||| |||||||||||| || | Sbjct 86 GGTGGTGGGACTACATCGCATTGCCAGATGATGTTCATCCTTTTGATGAAGGAGCGTTGA 145 Query 959 GGATGCAAATAAAGAACCTTGCGTGTACG 987 ||||| | || ||||| |||| |||||| Sbjct 146 GGATGGAGATTAAGAATTTTGCATGTACG 174 > Ahg347252 jgi|Araly1|347252|fgenesh1_pg.C_scaffold_5000644 Length=678 Score = 228 bits (123), Expect = 1e-58 Identities = 145/156 (93%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 1161 GGAAGAAACCGAGGAAATCACAAGACCGTTTCTAGATGCTCTTGGTGATGAGTACTCGGA 1220 ||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| |||| Sbjct 174 GGAAGAAGCCGAGGAAATCACGAGACTGTTTCTAGATGCTCTTGGTGATGAGTATTCGGT 233 Query 1221 CTGTTGCCAAGGAACGGCCTTCTTCCCTCTGCAAAGCTGTATGAACCATTCTTGTTGCCC 1280 || ||||||||||||||| ||||||||||| || ||||||||||||||||||||| |||| Sbjct 234 CTATTGCCAAGGAACGGCTTTCTTCCCTCTACAGAGCTGTATGAACCATTCTTGTCGCCC 293 Query 1281 TAATGCAAAAGCCTTCAAAAGAGAAGAGGACAGAGA 1316 |||||||||||||||||||||||||||||||| ||| Sbjct 294 TAATGCAAAAGCCTTCAAAAGAGAAGAGGACAAAGA 329 Score = 193 bits (104), Expect = 4e-48 Identities = 134/149 (90%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 839 AGCCAAAGCAGTCGCTTCTCTTGGAAGCATGGAAACCAGTATCGATTGGATACAAAAGAA 898 |||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 26 AGCCAAAGAAGTCGCTACTCTTGGAGGCATGGAAACCAGTATCGATTGGATACAAAAGAA 85 Query 899 GGTGGTGGGACTGCATTGCATTGCCAGATGATGTTGATCCTACTGATGAAGGAGCCTTCA 958 |||||||||||||||| |||||||||||||||||| ||||| |||||||||||| || | Sbjct 86 GGTGGTGGGACTGCATCGCATTGCCAGATGATGTTCATCCTTTTGATGAAGGAGCGTTGA 145 Query 959 GGATGCAAATAAAGAACCTTGCGTGTACG 987 ||||| | || ||||| |||| |||||| Sbjct 146 GGATGGAGATTAAGAATTTTGCATGTACG 174 > Ahg946013 jgi|Araly1|946013|scaffold_702242.1 Length=331 Score = 207 bits (112), Expect = 2e-52 Identities = 144/160 (90%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 828 GAAACAGAGTGAGCCAAAGCAGTCGCTTCTCTTGGAAGCATGGAAACCAGTATCGATTGG 887 |||||||| | |||||||||||||||| | |||||| ||||||||||||||||||||||| Sbjct 77 GAAACAGATTAAGCCAAAGCAGTCGCTACACTTGGAGGCATGGAAACCAGTATCGATTGG 136 Query 888 ATACAAAAGAAGGTGGTGGGACTGCATTGCATTGCCAGATGATGTTGATCCTACTGATGA 947 ||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||| Sbjct 137 ATACAAAAGAAGGTGGTGGGACTGCATCGCATTGCCAGATGATGTTCATCCTTTTGATGA 196 Query 948 AGGAGCCTTCAGGATGCAAATAAAGAACCTTGCGTGTACG 987 |||||| || |||||| | || ||||| ||||||||||| Sbjct 197 AGGAGCGTTGAGGATGGAGATTAAGAATTTTGCGTGTACG 236 Score = 117 bits (63), Expect = 3e-25 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 1161 GGAAGAAACCGAGGAAATCACAAGACCGTTTCTAGATGCTCTTGGTGATGAGTACTCGGA 1220 ||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 236 GGAAGAAGCCGAGGAAATCACGAGACTGTTTCTAGATGCTCTTGGTGATGAGTACTCGGA 295 Query 1221 CTGTTGCCAAGG 1232 |||||||||||| Sbjct 296 CTGTTGCCAAGG 307 > Ahg946011 jgi|Araly1|946011|scaffold_702240.1 Length=235 Score = 113 bits (61), Expect = 4e-24 Identities = 67/70 (96%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 1240 TTCTTCCCTCTGCAAAGCTGTATGAACCATTCTTGTTGCCCTAATGCAAAAGCCTTCAAA 1299 |||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 3 TTCTTCCCTCTGCAGAGCTGTATGAACCATTCTTGTTGCCCTAATGCCAAATCCTTCAAA 62 Query 1300 AGAGAAGAGG 1309 |||||||||| Sbjct 63 AGAGAAGAGG 72 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62886994495 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5