BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21860.1
Length=459
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930150 jgi|Araly1|930150|scaffold_302607.1 455 1e-127
Ahg930151 jgi|Araly1|930151|scaffold_302608.1 418 2e-116
Ahg930149 jgi|Araly1|930149|scaffold_302606.1 252 2e-66
> Ahg930150 jgi|Araly1|930150|scaffold_302607.1
Length=507
Score = 455 bits (246), Expect = 1e-127
Identities = 395/466 (85%), Gaps = 14/466 (3%)
Strand=Plus/Plus
Query 1 ATGTCGACGAAGAAGATCAT-ATTGAAGAGCTCCGATGGTCACTCATTCGAGGTCGAAGA 59
||||||||||||| |||| | |||| |||||| |||||||| | || ||| || ||||
Sbjct 28 ATGTCGACGAAGATGATC-TCGTTGACGAGCTCTGATGGTCAAACGTTTGAGATCAAAGA 86
Query 60 AGAGGCCGCATGCCAATGCCAGACCATAGCTCATATGAGTGAAGACGATTGTACCGATA- 118
||| |||||| |||||||||||| |||| |||||||| ||| |||||||| ||||||
Sbjct 87 AGATGCCGCACGCCAATGCCAGATCATAAATCATATGATTGAGGACGATTGCGCCGATAG 146
Query 119 ATGGAATCCCGCTTCCAGAA-GTGACAGGCAAGATTCTTGAGATGGTGATCGAGTACTGC 177
| | ||||||||||||| || ||||||||||||||||||| ||||||| |||||||||||
Sbjct 147 A-GAAATCCCGCTTCCA-AACGTGACAGGCAAGATTCTTGCGATGGTGCTCGAGTACTGC 204
Query 178 AACAAGCACCACGTCGATGCCGCTAATCCTTGCTCCGACGAGGATCTCAAGAAGTGGGAC 237
|| |||||||||||||||| ||||| |||| | ||||||||||||||||||| ||||||
Sbjct 205 AAGAAGCACCACGTCGATGATGCTAACCCTTCCACCGACGAGGATCTCAAGAAATGGGAC 264
Query 238 -AAGGAA-TTCATGGAAAAATATCAATCCACGATCTTTGATCTCATT-ATGGCTGCGAAT 294
|| || |||||||||||| |||||| ||| |||||||||||||| || ||||| | |
Sbjct 265 GAA--AAGTTCATGGAAAAAGATCAATTAACGCTCTTTGATCTCATTAAT-GCTGCTAGT 321
Query 295 TACCTAAACATCA-AAAGCCTTCTTGATCTAGCATGCCAAACCGTCGCGGATATGATCAA 353
|||||| |||| | |||||||||||||||||||||||||||| | | ||||||||| |||
Sbjct 322 TACCTAGACAT-ACAAAGCCTTCTTGATCTAGCATGCCAAACTGCCTCGGATATGAGCAA 380
Query 354 AGACAACACTGTGGAGCACACTCGCAAATTCTTCAACATTGAGAATGATTATACACATGA 413
|| ||| ||| |||| || |||||| |||||||||||||||||||||||| ||||| |||
Sbjct 381 AGCCAAAACTCTGGACCAGACTCGCGAATTCTTCAACATTGAGAATGATTTTACACCTGA 440
Query 414 GGAAGAAGAAGCGGTTCGTAGGGAGAATCAATGGGGTTTTGAATGA 459
||||||| |||| |||| || ||| ||||| || ||||||||||
Sbjct 441 GGAAGAAAAAGCTGTTCTTAAGGACTATCAAAAGGCTTTTGAATGA 486
> Ahg930151 jgi|Araly1|930151|scaffold_302608.1
Length=499
Score = 418 bits (226), Expect = 2e-116
Identities = 386/463 (83%), Gaps = 12/463 (3%)
Strand=Plus/Plus
Query 1 ATGTCGACGAAGA-AGATCATA-TTGAAGAGCTCCGATGGTCACTCATTCGAGGTCGAAG 58
|||||| |||||| | |||| | |||||||||||||||||| | || || ||| || |||
Sbjct 21 ATGTCGGCGAAGATA-ATCA-AGTTGAAGAGCTCCGATGGTGAATCGTTTGAGATCAAAG 78
Query 59 AAGAGGCCGCATGCCAATGCCAGACCATAGCTCATATGAGTGAAGACGATTGTACCGATA 118
||||||| ||| |||||| |||||||||| |||| ||| ||| |||||||| |||||||
Sbjct 79 AAGAGGCTGCACGCCAATCCCAGACCATATTTCATCTGATTGACGACGATTGCACCGATA 138
Query 119 ATGGAATCCCGCTTCCAGAA-GTGACAGGCAAGATTCTTGAGATGGTGATCGAGTACTGC 177
| | ||||||| ||||| || |||||| ||||||||||| ||||||| |||||||||
Sbjct 139 AAGAAATCCCGGTTCCA-AACGTGACAAGCAAGATTCTTTCGATGGTGGTCGAGTACTTA 197
Query 178 AACAAGCACCACGTCGATGCCGCTAATCCTTGCTCCGACGAGGATCTCAAGAAGTGGGAC 237
|| ||||||||||||| || ||||| |||| | ||||||||||||||||||||||||||
Sbjct 198 AAGAAGCACCACGTCGGTGATGCTAACCCTTCCACCGACGAGGATCTCAAGAAGTGGGAC 257
Query 238 AAGGAATTCATGGAAAAATATCAATCCACGATCTTTGATCTCATTATGGCTGCGAATTAC 297
||| |||||| ||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 258 GCGGAGTTCATGCAAATCGATCAATCCACGATCTTTGATCTCATTATGGCTGCGAATCAC 317
Query 298 CTAAACATCAAAAGCCTT-CTTGATCTAGCATGCCAAACCGTCGCGGATATGATCAAAGA 356
|||||||||||||||||| || || ||| |||||||||| ||||||||||||||||||||
Sbjct 318 CTAAACATCAAAAGCCTTACT-GACCTAACATGCCAAACTGTCGCGGATATGATCAAAGA 376
Query 357 C-AACACTGTGGAGCACACTC-GCAAATTCTTCAACATTGAGAATGATTATACACATGAG 414
|| ||| | || | || || || |||||||||||||||||||| ||||| ||||
Sbjct 377 GGAA-ACTCCAAAACAGA-TCCGCCAACGCTTCAACATTGAGAATGATTTTACACCTGAG 434
Query 415 GAAGAAGAAGCGGTTCGTAGGGAGAATCAATGGGGTTTTGAAT 457
|||||| |||| |||| || | | ||||| || ||||||||
Sbjct 435 GAAGAAAAAGCTGTTCTTAAGAACTATCAAAAGGCTTTTGAAT 477
> Ahg930149 jgi|Araly1|930149|scaffold_302606.1
Length=269
Score = 252 bits (136), Expect = 2e-66
Identities = 214/251 (85%), Gaps = 7/251 (3%)
Strand=Plus/Plus
Query 212 CCGACGAGGATCTCAAGAAGTGGGAC-AAGGAATTCATGGAAAAATATCAATCCACGATC 270
||||||||||||||||||| |||||| || || ||||||||||| |||||| ||| ||
Sbjct 2 CCGACGAGGATCTCAAGAAATGGGACGAA--AAGTCATGGAAAAAGATCAATTAACGCTC 59
Query 271 TTTGATCTCATT-ATGGCTGCGAATTACCTAAACATCA-AAAGCCTTCTTGATCTAGCAT 328
|||||||||||| || ||||| | ||||||| |||| | |||||||||||||||||||||
Sbjct 60 TTTGATCTCATTAAT-GCTGCTAGTTACCTAGACAT-ACAAAGCCTTCTTGATCTAGCAT 117
Query 329 GCCAAACCGTCGCGGATATGATCAAAGACAACACTGTGGAGCACACTCGCAAATTCTTCA 388
||||||| | | ||||||||| ||||| ||| ||| |||| || |||||| |||||||||
Sbjct 118 GCCAAACTGCCTCGGATATGAGCAAAGCCAAAACTCTGGACCAGACTCGCGAATTCTTCA 177
Query 389 ACATTGAGAATGATTATACACATGAGGAAGAAGAAGCGGTTCGTAGGGAGAATCAATGGG 448
||||||||||||||| ||||| |||||||||| |||| |||| || ||| ||||| ||
Sbjct 178 ACATTGAGAATGATTTTACACCTGAGGAAGAAAAAGCTGTTCTTAAGGACTATCAAAAGG 237
Query 449 GTTTTGAATGA 459
||||||||||
Sbjct 238 CTTTTGAATGA 248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16597681215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5