BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21880.1
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318927 jgi|Araly1|318927|fgenesh1_pm.C_scaffold_3001943 898 0.0
Ahg930154 jgi|Araly1|930154|scaffold_302611.1 688 0.0
Ahg930160 jgi|Araly1|930160|scaffold_302617.1 226 3e-58
Ahg329983 jgi|Araly1|329983|fgenesh1_pm.C_scaffold_7002210 226 3e-58
Ahg930156 jgi|Araly1|930156|scaffold_302613.1 215 6e-55
> Ahg318927 jgi|Araly1|318927|fgenesh1_pm.C_scaffold_3001943
Length=1134
Score = 898 bits (486), Expect = 0.0
Identities = 632/700 (90%), Gaps = 19/700 (3%)
Strand=Plus/Plus
Query 407 CTTATTCCATGGTACCACACAACATCAGT-TACACTCAGAATTTCAGTGAT-AATTTGTC 464
||||||||||||| ||||||| | ||| | | ||||||||||||||||||| || |||||
Sbjct 443 CTTATTCCATGGTGCCACACAGCTTCAATGT-CACTCAGAATTTCAGTGATCAA-TTGTC 500
Query 465 TTTCTTTTCCACGGAATCTAAGGGATATCCTGATATGGTTCTTAAACTTGAAGAAGGAGA 524
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 501 TTTCTTTTCCGTGGAATCTAAGGGATATCCTGATTTGGTTCTTAAACTTGAAGAAGGCGA 560
Query 525 AGAAGATCTATGTGAAGGGCTTAACTTGGATGATGCACCATTAAACTTTGACGTAGGAGA 584
||||||| ||||||||||||||||||| || |||| || |||||||||||||| |||||
Sbjct 561 AGAAGATTTATGTGAAGGGCTTAACTTTGACAATGCGCCGTTAAACTTTGACGTTGGAGA 620
Query 585 TGATATTATCGGATGTTCATCAGAAGTACACATAGAACCGGACCATACGGTACCAAATTG 644
|||||||||||||||||| | ||||| || |||||||||||||||||| |||||||||||
Sbjct 621 TGATATTATCGGATGTTCTTTAGAAGAACCCATAGAACCGGACCATACAGTACCAAATTG 680
Query 645 CCTATTGATTGACAAGACTAACACATCCAGCTTTACCGGCTCCAACTTTACTGTAGACAA 704
|||| |||| ||||||| |||||||||| | |||||| ||| ||||||||| |||||||
Sbjct 681 CCTACTGATCGACAAGAATAACACATCC-G--TTACCGCCTCAAACTTTACTATAGACAA 737
Query 705 GGCTCTAGAGGCATCGCCACCAGGTCAGCAAATGAACATCAACACTGGACTTCAGCTTCC 764
| | | |||||| ||||||| || ||||||||||||||||||||||||| ||||||
Sbjct 738 --CAC-ATCCGCATCGTCACCAGGACAACAAATGAACATCAACACTGGACTTCCGCTTCC 794
Query 765 TCTATCACCTGTCTTGTTCGGACAAATCCATCCATCTCTTAACA--T-C-AC-T----GG 815
|||||||||||||||||||||||||||||||||||| ||||||| | | || | ||
Sbjct 795 TCTATCACCTGTCTTGTTCGGACAAATCCATCCATCGCTTAACATCTCCAACGTCACAGG 854
Query 816 TGAAAACAATGCAGCTGATTACCAGGATTGTGGGATGTCTCCAGGGTTTATAATGAGTGA 875
||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 855 TGAAAGCAATGCAGCTGATTACCAGGATTGTGGGATGCCTCCAGGGTTTATAACGAGTGA 914
Query 876 AGCGCCATGGGAAACGAATTTTGAAGTTAGTTGTCCACAAGCAAGAAACGAGGCTAAGTT 935
||| ||||||||| ||||| ||||||||||||||||||||||||||| | | ||||||||
Sbjct 915 AGCACCATGGGAATCGAATCTTGAAGTTAGTTGTCCACAAGCAAGAACCCAAGCTAAGTT 974
Query 936 GAGATACAAGGAGAAGAAATTAAAGCGCTCTTTTGGGAAACAGATTCGATATGCATCTCG 995
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 975 GAGATACATGGAGAAGAAATTAAAGCGCTCTTTTGGGAAACAGATTCGATATGCATCGCG 1034
Query 996 CAAAGCAAGAGCTGACACGAGGAAAAGAGTGAAAGGAAGATTTGTGAAAGCTGGTGACAG 1055
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 CAAAGCAAGAGCTGACACGAGGAAAAGAGTGAAAGGAAGATTTGTGAAAGCTGGTGACAA 1094
Query 1056 TTATGATTATGATCCATCATCACCGACGACGAACAATTGA 1095
|||||||||||| ||||||||||||||||| |||||||||
Sbjct 1095 TTATGATTATGACCCATCATCACCGACGACAAACAATTGA 1134
Score = 536 bits (290), Expect = 1e-151
Identities = 363/399 (91%), Gaps = 2/399 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCCAAAGTGTGACCATTGTGCAACCTCGCAAGCATTGATTTACTGCAAATCCGAT 60
|||||||||||||||||||| |||||||| || |||||| ||||||||||||||||||||
Sbjct 1 ATGGAGCCAAAGTGTGACCACTGTGCAACTTCACAAGCAGTGATTTACTGCAAATCCGAT 60
Query 61 TTGGCTAAACTATGCCTAAACTGCGACGTCCATGTACACTCTGCGAATCCTCTGTCTCAC 120
|||||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||
Sbjct 61 TTGGCTAAACTATGCCAAAACTGCGACTTCCACGTACACTCTGCGAATCCTCTATCTCAT 120
Query 121 AGGCACAT-ACGCTCTTTGATCTGCGAGAAATGCTTCTCACAGCCAGCCGCAATCCGCTG 179
|| ||| | |||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 121 AGACAC-TCACGCTCTTTGATCTGCCAGAAATGCTTCTCACAGCCAGCCGTAATCCGCTG 179
Query 180 TCTCGACGAGAAGGTTTCATACTGCCAAGGATGTCATTGGCACGAAAGCAACTGTTCGGA 239
||||| |||||||||||||| |||||| ||||||||||||||| ||||||||| |||||
Sbjct 180 TCTCGGTGAGAAGGTTTCATATTGCCAAAGATGTCATTGGCACGCAAGCAACTGCTCGGA 239
Query 240 GTTAGGACACAGAGTTCAGAGCTTGAATCCTTTCTCTGGTTGTCCTTCTCCTACAGATTT 299
|||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 240 TTTAGGACACAGAGTTCAGAGGTTGAACCCTTTCTCTGGTTGTCCTTCTCCAACAGATTT 299
Query 300 TAACAGAATGTGGTCTTCAATTCTTGAACCTCCTGTCTCCGGCTTGCTTAGTCCGTTCGT 359
| || ||||||||||||||||||||||||| ||||||| | ||| |||||||||| ||
Sbjct 300 TGTCAAAATGTGGTCTTCAATTCTTGAACCTTCTGTCTCTAGTTTGGTTAGTCCGTTTGT 359
Query 360 TGGTTCTTTTCCCTTGAATGATCTCAACAATACCATGTT 398
||||||||| ||||||||||||| ||| |||||||||||
Sbjct 360 TGGTTCTTTGCCCTTGAATGATCCCAATAATACCATGTT 398
> Ahg930154 jgi|Araly1|930154|scaffold_302611.1
Length=1141
Score = 688 bits (372), Expect = 0.0
Identities = 508/571 (89%), Gaps = 19/571 (3%)
Strand=Plus/Plus
Query 407 CTTATTCCATGGTACCACACAACATCAGT-TACACTCAGAATTTCAGTGAT-AATTTGTC 464
||||||||||||| ||||||| | ||| | | ||||||||||||||||||| || |||||
Sbjct 463 CTTATTCCATGGTGCCACACAGCTTCAATGT-CACTCAGAATTTCAGTGATCAA-TTGTC 520
Query 465 TTTCTTTTCCACGGAATCTAAGGGATATCCTGATATGGTTCTTAAACTTGAAGAAGGAGA 524
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 521 TTTCTTTTCCGTGGAATCTAAGGGATATCCTGATTTGGTTCTTAAACTTGAAGAAGGCGA 580
Query 525 AGAAGATCTATGTGAAGGGCTTAACTTGGATGATGCACCATTAAACTTTGACGTAGGAGA 584
||||||| ||||||||||||||||||| || |||| || |||||||||||||| |||||
Sbjct 581 AGAAGATTTATGTGAAGGGCTTAACTTTGACAATGCGCCGTTAAACTTTGACGTTGGAGA 640
Query 585 TGATATTATCGGATGTTCATCAGAAGTACACATAGAACCGGACCATACGGTACCAAATTG 644
|||||||||||||||||| | ||||| || |||||||||||||||||| |||||||||||
Sbjct 641 TGATATTATCGGATGTTCTTTAGAAGAACCCATAGAACCGGACCATACAGTACCAAATTG 700
Query 645 CCTATTGATTGACAAGACTAACACATCCAGCTTTACCGGCTCCAACTTTACTGTAGACAA 704
|||| |||| ||||||| |||||||||| | |||||| ||| ||||||||| |||||||
Sbjct 701 CCTACTGATCGACAAGAATAACACATCC-G--TTACCGCCTCAAACTTTACTATAGACAA 757
Query 705 GGCTCTAGAGGCATCGCCACCAGGTCAGCAAATGAACATCAACACTGGACTTCAGCTTCC 764
|||| | ||||||||| ||||||| || ||||||||||||||||||||||||| ||||||
Sbjct 758 GGCTTTTGAGGCATCGTCACCAGGACAACAAATGAACATCAACACTGGACTTCCGCTTCC 817
Query 765 TCTATCACCTGTCTTGTTCGGACAAATCCATCCATCTCTTAACA--T-C-AC-T----GG 815
|||||||||||||||||||||||||||||||||||| ||||||| | | || | ||
Sbjct 818 TCTATCACCTGTCTTGTTCGGACAAATCCATCCATCGCTTAACATCTCCAACGTCACAGG 877
Query 816 TGAAAACAATGCAGCTGATTACCAGGATTGTGGGATGTCTCCAGGGTTTATAATGAGTGA 875
||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 878 TGAAAGCAATGCAGCTGATTACCAGGATTGTGGGATGCCTCCAGGGTTTATAACGAGTGA 937
Query 876 AGCGCCATGGGAAACGAATTTTGAAGTTAGTTGTCCACAAGCAAGAAA-CGAGGCTAAGT 934
||| ||||||||| ||||| ||||||||||||||||||||||||| | | || |||| |
Sbjct 938 AGCACCATGGGAATCGAATCTTGAAGTTAGTTGTCCACAAGCAAGTACTCAAG-CTAAAT 996
Query 935 TGAGATACAAGGAGAAGAAATTAAAGCGCTC 965
||||||||| |||||||||||||| ||||||
Sbjct 997 TGAGATACATGGAGAAGAAATTAA-GCGCTC 1026
Score = 536 bits (290), Expect = 1e-151
Identities = 363/399 (91%), Gaps = 2/399 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCCAAAGTGTGACCATTGTGCAACCTCGCAAGCATTGATTTACTGCAAATCCGAT 60
|||||||||||||||||||| |||||||| || |||||| ||||||||||||||||||||
Sbjct 21 ATGGAGCCAAAGTGTGACCACTGTGCAACTTCACAAGCAGTGATTTACTGCAAATCCGAT 80
Query 61 TTGGCTAAACTATGCCTAAACTGCGACGTCCATGTACACTCTGCGAATCCTCTGTCTCAC 120
|||||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||
Sbjct 81 TTGGCTAAACTATGCCAAAACTGCGACTTCCACGTACACTCTGCGAATCCTCTATCTCAT 140
Query 121 AGGCACAT-ACGCTCTTTGATCTGCGAGAAATGCTTCTCACAGCCAGCCGCAATCCGCTG 179
|| ||| | |||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 141 AGACAC-TCACGCTCTTTGATCTGCCAGAAATGCTTCTCACAGCCAGCCGTAATCCGCTG 199
Query 180 TCTCGACGAGAAGGTTTCATACTGCCAAGGATGTCATTGGCACGAAAGCAACTGTTCGGA 239
||||| |||||||||||||| |||||| ||||||||||||||| ||||||||| |||||
Sbjct 200 TCTCGGTGAGAAGGTTTCATATTGCCAAAGATGTCATTGGCACGCAAGCAACTGCTCGGA 259
Query 240 GTTAGGACACAGAGTTCAGAGCTTGAATCCTTTCTCTGGTTGTCCTTCTCCTACAGATTT 299
|||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 260 TTTAGGACACAGAGTTCAGAGGTTGAACCCTTTCTCTGGTTGTCCTTCTCCAACAGATTT 319
Query 300 TAACAGAATGTGGTCTTCAATTCTTGAACCTCCTGTCTCCGGCTTGCTTAGTCCGTTCGT 359
| || ||||||||||||||||||||||||| ||||||| | ||| |||||||||| ||
Sbjct 320 TGTCAAAATGTGGTCTTCAATTCTTGAACCTTCTGTCTCTAGTTTGGTTAGTCCGTTTGT 379
Query 360 TGGTTCTTTTCCCTTGAATGATCTCAACAATACCATGTT 398
||||||||| ||||||||||||| ||| |||||||||||
Sbjct 380 TGGTTCTTTGCCCTTGAATGATCCCAATAATACCATGTT 418
Score = 159 bits (86), Expect = 3e-38
Identities = 92/95 (97%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 1001 CAAGAGCTGACACGAGGAAAAGAGTGAAAGGAAGATTTGTGAAAGCTGGTGACAGTTATG 1060
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1027 CAAGAGCTGACACGAGGAAAAGAGTGAAAGGAAGATTTGTGAAAGCTGGTGACAATTATG 1086
Query 1061 ATTATGATCCATCATCACCGACGACGAACAATTGA 1095
||||||| ||||||||||||||||| |||||||||
Sbjct 1087 ATTATGACCCATCATCACCGACGACAAACAATTGA 1121
> Ahg930160 jgi|Araly1|930160|scaffold_302617.1
Length=242
Score = 226 bits (122), Expect = 3e-58
Identities = 160/179 (89%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCCAAAGTGTGACCATTGTGCAACCTCGCAAGCATTGATTTACTGCAAATCCGAT 60
||||||||||||||| || | |||||||| || ||| || ||||||||||||||||||||
Sbjct 24 ATGGAGCCAAAGTGTAACTACTGTGCAACTTCACAAACAGTGATTTACTGCAAATCCGAT 83
Query 61 TTGGCTAAACTATGCCTAAACTGCGACGTCCATGTACACTCTGCGAATCCTCTGTCTCAC 120
|||||||||||||||| |||||||||| |||| ||| ||| |||||||||||| ||||||
Sbjct 84 TTGGCTAAACTATGCCAAAACTGCGACTTCCACGTATACTATGCGAATCCTCTATCTCAC 143
Query 121 AGGCACATACGCTCTTTGATCTGCGAGAAATGCTTCTCACAGCCAGCCGCAATCCGCTG 179
||| ||| | |||||||||||||| |||||||||| ||||| |||||||||||||||||
Sbjct 144 AGGTACACATGCTCTTTGATCTGCCAGAAATGCTTTTCACAACCAGCCGCAATCCGCTG 202
> Ahg329983 jgi|Araly1|329983|fgenesh1_pm.C_scaffold_7002210
Length=993
Score = 226 bits (122), Expect = 3e-58
Identities = 270/338 (80%), Gaps = 24/338 (7%)
Strand=Plus/Plus
Query 13 TGTGACCATTGTGCAACCTCGCAAGCATTGATTTACTGCAAATCCGATTTGGCTAAACTA 72
|||||| |||||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 13 TGTGACTATTGTGAAACCGAAAAAGCATTAATTTACTGCAAATCCGATTTGGCTAAACTT 72
Query 73 TGCCTAAACTGCGACGTCCATGTACACTCTGCGAATCCTCTGTCTCACAGGCACATACGC 132
|| ||||||| || || || ||||||| ||||||||||||||||| || |||| |||
Sbjct 73 TGTTTAAACTGTGATGTTAATATACACTCAGCGAATCCTCTGTCTCAAAGACACACACGG 132
Query 133 TCTTTGA-TCTGCGAGAAATGCTTCTCACAGCC-AGCCGCAATCCGCTGTCTCGA-CGAG 189
|||| | ||||||||||||| |||| || || | | | ||||| |||| | || ||||
Sbjct 133 ACTTT-ACTCTGCGAGAAATGTTTCTTGCAACCCA-CGGTAATCCACTGTAT-GAACGAG 189
Query 190 AAGGTTTCATACT--GCCAAGGATGTCATTGGCAC-GAAAGC-AACTGTTCGGAGTT-AG 244
|||||||| | || | ||||||||||| ||| || | || | ||||| | | ||| ||
Sbjct 190 AAGGTTTC-T-CTTTGTCAAGGATGTCAATGG-ACCGCAA-CTAACTGCACTG-GTTTAG 244
Query 245 GACACAGAGTTCAGAG-CTTGAATCCTTTCTCTGGTTGTCCTTCTCC-TACAGATTTTAA 302
|||||||| |||||| || |||||||| |||||||||||||||||| | |||||||
Sbjct 245 GACACAGACTTCAGAATCT-GAATCCTTACTCTGGTTGTCCTTCTCCAT-CAGATTTCGC 302
Query 303 CA-GAATGTGGTCTTCAATTCTT-GAACCTCCTGTCTC 338
|| || | |||||||| ||| || |||||| |||||||
Sbjct 303 CAAGA-TCTGGTCTTCGATT-TTAGAACCTTCTGTCTC 338
> Ahg930156 jgi|Araly1|930156|scaffold_302613.1
Length=238
Score = 215 bits (116), Expect = 6e-55
Identities = 158/179 (88%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCCAAAGTGTGACCATTGTGCAACCTCGCAAGCATTGATTTACTGCAAATCCGAT 60
||||||||||||||| || | | ||||| || ||| || ||||||||||||||||||||
Sbjct 24 ATGGAGCCAAAGTGTAACTACTATGCAATTTCACAAACAGTGATTTACTGCAAATCCGAT 83
Query 61 TTGGCTAAACTATGCCTAAACTGCGACGTCCATGTACACTCTGCGAATCCTCTGTCTCAC 120
|||||||||||||||| |||||||||| |||| ||| ||| |||||||||||| ||||||
Sbjct 84 TTGGCTAAACTATGCCAAAACTGCGACTTCCACGTATACTATGCGAATCCTCTATCTCAC 143
Query 121 AGGCACATACGCTCTTTGATCTGCGAGAAATGCTTCTCACAGCCAGCCGCAATCCGCTG 179
||| ||| | |||||||||||||| |||||||||| ||||| |||||||||||||||||
Sbjct 144 AGGTACACATGCTCTTTGATCTGCCAGAAATGCTTTTCACAACCAGCCGCAATCCGCTG 202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40791521190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5