BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21900.1 Length=753 Score E Sequences producing significant alignments: (Bits) Value Ahg479710 jgi|Araly1|479710|fgenesh2_kg.3__2411__AT3G21900.1 1026 0.0 Ahg930166 jgi|Araly1|930166|scaffold_302623.1 84.2 1e-15 Ahg479712 jgi|Araly1|479712|fgenesh2_kg.3__2413__AT3G21920.1 78.7 6e-14 > Ahg479710 jgi|Araly1|479710|fgenesh2_kg.3__2411__AT3G21900.1 Length=753 Score = 1026 bits (555), Expect = 0.0 Identities = 667/721 (93%), Gaps = 8/721 (1%) Strand=Plus/Plus Query 17 CGACATGCTTCGTTTTGATCACTATATTTGCCGTGGTGGTAACACAACTGATCTTTATGC 76 ||||||||||| |||||||| |||| || ||| |||||| ||||||||| ||||||||| Sbjct 23 CGACATGCTTCTTTTTGATCCCTATCTTGGCCATGGTGGCCACACAACTGGTCTTTATGC 82 Query 77 GCACCGTTTCGTCCTTGAACATGACCAATGCCTATCTGAACCACAAATGCTTAGCCAATC 136 ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 83 GCACCGTTTCGTCTTTGAACATGACCAATGCCTATTTGAACCACAAATGCTTAGCCAAAC 142 Query 137 AAGGGAA-ATACAAGCCGGGAAGTTGGTATGAGAAAAAACTCCAAAGTATTATAGTCTCT 195 || |||| |||||||||||||||||||||||||||| ||||||||| ||| ||||||||| Sbjct 143 AA-GGAAGATACAAGCCGGGAAGTTGGTATGAGAAACAACTCCAAACTATCATAGTCTCT 201 Query 196 ATCGGTAGCGGTGATGGTTTTACCCTTGGTTACGACATGATGGCCCTTGGTAAGGATTCT 255 ||||| ||||||||||||||||||| |||||||||||||||| ||||||| | |||||| Sbjct 202 ATCGGAAGCGGTGATGGTTTTACCCACGGTTACGACATGATGGGCCTTGGTGATGATTCT 261 Query 256 GATTACGT-AGCCGTCACCAACCAGTGCCGTGGCGACTCCAACGGGTCCATGTGCCGCTC 314 |||||||| || |||||||||||||||||| || |||||| ||||||||| ||||||||| Sbjct 262 GATTACGTCAG-CGTCACCAACCAGTGCCGCGGGGACTCCTACGGGTCCAAGTGCCGCTC 320 Query 315 CTGCTTTGCCACCGCCATCGCAAGGGGGGCAATAATATGGTACGACCAATGTACTCTCCA 374 |||||||||||||||||||||| ||||||||||||||||||| |||||||||||| || | Sbjct 321 CTGCTTTGCCACCGCCATCGCAGGGGGGGCAATAATATGGTATGACCAATGTACTGTCGA 380 Query 375 GATTTCTCCGTTCGATACTCAAGGGAAGTTCGACAAAGATAATGATTTCTGTATGTCCAA 434 ||||||| |||||||| ||||||| |||||||| |||||||| ||||||||||||||||| Sbjct 381 GATTTCTTCGTTCGATCCTCAAGGAAAGTTCGATAAAGATAACGATTTCTGTATGTCCAA 440 Query 435 CAAGAAGAAAATGAACGTAGATTCGTTTGGAGAGAAGTGGATGACATTCCTCGACAATTT 494 | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 441 CGCGAAGAAAATGAACGTAGATTCGTTTGGAGAGAAGTGGATGACTTTCCTCGACAATTT 500 Query 495 GGTAGGTATAGCCCTCAAAGATCATTTGTATGCCGCTGGGGATACAAGGTTCGGGACAAA 554 ||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| || Sbjct 501 GGTGGGTATAGCCCTCAAAGATTATTTGTATGCCGCGGGGGATACAAGGTTCGGGACGAA 560 Query 555 GAAGTTGTACGGGATGGTGCAGTGTAGG-CTTGACATATATAATAATAGTTGTCGAGAGT 613 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||| Sbjct 561 GAAGTTGTACGGGATGGTGCAGTGTAGGAC-TGACATATATAATAATAGTTGTCGAAAGT 619 Query 614 GTGTTGGACACATAGCCGTAAAATTTCAAGATTGCTGGCATGGTAAACAAGGAGCTAGAG 673 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 620 GTGTTGGACACTTAGCCGTGAAATTTCAAGATTGCTGGCATGGTAAACAAGGAGCTAGAG 679 Query 674 TGT-TGGGTAGTGGTTGTAACTTTAGGTATGAGCTTTACCCTTTTGTTGGTAGTAACAAG 732 | | |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 680 T-TATGGGTAGTGGTTGTAACTTTAGGTATGAGCTTTACCCTTTTGTTAGTAGTGCCAAG 738 Query 733 C 733 | Sbjct 739 C 739 > Ahg930166 jgi|Araly1|930166|scaffold_302623.1 Length=532 Score = 84.2 bits (45), Expect = 1e-15 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 637 TTTCAAGATTGCTGGCATGGTAAACAAGGAGCTA-GAGTGTTGGGTAGTGGTTGTAACTT 695 |||||| |||||||| | | |||||||||| || |||| ||| |||| | |||||||| Sbjct 396 TTTCAAAATTGCTGGAAAAGCAAACAAGGAG-TACGAGTTTTGAGTAGAAGCTGTAACTT 454 Query 696 TAGGTATGAGCTTTACCCTTTT 717 |||||||||||||||||||||| Sbjct 455 TAGGTATGAGCTTTACCCTTTT 476 > Ahg479712 jgi|Araly1|479712|fgenesh2_kg.3__2413__AT3G21920.1 Length=884 Score = 78.7 bits (42), Expect = 6e-14 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 637 TTTCAAGATTGCTGGCATGGTAAACAAGGAGCT-AGAGTGTTGGGTAGTGGTTGTAACTT 695 |||||| | |||||| | |||||||||||| | ||||| ||| |||| |||||||| Sbjct 765 TTTCAAAAATGCTGGAAAAGTAAACAAGGAG-TAAGAGTTTTGAGTAGAAACTGTAACTT 823 Query 696 TAGGTATGAGCTTTACCCTTTT 717 |||||||||||||||||||||| Sbjct 824 TAGGTATGAGCTTTACCCTTTT 845 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27753483576 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5