BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21900.1
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479710 jgi|Araly1|479710|fgenesh2_kg.3__2411__AT3G21900.1 1026 0.0
Ahg930166 jgi|Araly1|930166|scaffold_302623.1 84.2 1e-15
Ahg479712 jgi|Araly1|479712|fgenesh2_kg.3__2413__AT3G21920.1 78.7 6e-14
> Ahg479710 jgi|Araly1|479710|fgenesh2_kg.3__2411__AT3G21900.1
Length=753
Score = 1026 bits (555), Expect = 0.0
Identities = 667/721 (93%), Gaps = 8/721 (1%)
Strand=Plus/Plus
Query 17 CGACATGCTTCGTTTTGATCACTATATTTGCCGTGGTGGTAACACAACTGATCTTTATGC 76
||||||||||| |||||||| |||| || ||| |||||| ||||||||| |||||||||
Sbjct 23 CGACATGCTTCTTTTTGATCCCTATCTTGGCCATGGTGGCCACACAACTGGTCTTTATGC 82
Query 77 GCACCGTTTCGTCCTTGAACATGACCAATGCCTATCTGAACCACAAATGCTTAGCCAATC 136
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 83 GCACCGTTTCGTCTTTGAACATGACCAATGCCTATTTGAACCACAAATGCTTAGCCAAAC 142
Query 137 AAGGGAA-ATACAAGCCGGGAAGTTGGTATGAGAAAAAACTCCAAAGTATTATAGTCTCT 195
|| |||| |||||||||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct 143 AA-GGAAGATACAAGCCGGGAAGTTGGTATGAGAAACAACTCCAAACTATCATAGTCTCT 201
Query 196 ATCGGTAGCGGTGATGGTTTTACCCTTGGTTACGACATGATGGCCCTTGGTAAGGATTCT 255
||||| ||||||||||||||||||| |||||||||||||||| ||||||| | ||||||
Sbjct 202 ATCGGAAGCGGTGATGGTTTTACCCACGGTTACGACATGATGGGCCTTGGTGATGATTCT 261
Query 256 GATTACGT-AGCCGTCACCAACCAGTGCCGTGGCGACTCCAACGGGTCCATGTGCCGCTC 314
|||||||| || |||||||||||||||||| || |||||| ||||||||| |||||||||
Sbjct 262 GATTACGTCAG-CGTCACCAACCAGTGCCGCGGGGACTCCTACGGGTCCAAGTGCCGCTC 320
Query 315 CTGCTTTGCCACCGCCATCGCAAGGGGGGCAATAATATGGTACGACCAATGTACTCTCCA 374
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||| || |
Sbjct 321 CTGCTTTGCCACCGCCATCGCAGGGGGGGCAATAATATGGTATGACCAATGTACTGTCGA 380
Query 375 GATTTCTCCGTTCGATACTCAAGGGAAGTTCGACAAAGATAATGATTTCTGTATGTCCAA 434
||||||| |||||||| ||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 381 GATTTCTTCGTTCGATCCTCAAGGAAAGTTCGATAAAGATAACGATTTCTGTATGTCCAA 440
Query 435 CAAGAAGAAAATGAACGTAGATTCGTTTGGAGAGAAGTGGATGACATTCCTCGACAATTT 494
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 441 CGCGAAGAAAATGAACGTAGATTCGTTTGGAGAGAAGTGGATGACTTTCCTCGACAATTT 500
Query 495 GGTAGGTATAGCCCTCAAAGATCATTTGTATGCCGCTGGGGATACAAGGTTCGGGACAAA 554
||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||
Sbjct 501 GGTGGGTATAGCCCTCAAAGATTATTTGTATGCCGCGGGGGATACAAGGTTCGGGACGAA 560
Query 555 GAAGTTGTACGGGATGGTGCAGTGTAGG-CTTGACATATATAATAATAGTTGTCGAGAGT 613
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||
Sbjct 561 GAAGTTGTACGGGATGGTGCAGTGTAGGAC-TGACATATATAATAATAGTTGTCGAAAGT 619
Query 614 GTGTTGGACACATAGCCGTAAAATTTCAAGATTGCTGGCATGGTAAACAAGGAGCTAGAG 673
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 620 GTGTTGGACACTTAGCCGTGAAATTTCAAGATTGCTGGCATGGTAAACAAGGAGCTAGAG 679
Query 674 TGT-TGGGTAGTGGTTGTAACTTTAGGTATGAGCTTTACCCTTTTGTTGGTAGTAACAAG 732
| | |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 680 T-TATGGGTAGTGGTTGTAACTTTAGGTATGAGCTTTACCCTTTTGTTAGTAGTGCCAAG 738
Query 733 C 733
|
Sbjct 739 C 739
> Ahg930166 jgi|Araly1|930166|scaffold_302623.1
Length=532
Score = 84.2 bits (45), Expect = 1e-15
Identities = 70/82 (85%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 637 TTTCAAGATTGCTGGCATGGTAAACAAGGAGCTA-GAGTGTTGGGTAGTGGTTGTAACTT 695
|||||| |||||||| | | |||||||||| || |||| ||| |||| | ||||||||
Sbjct 396 TTTCAAAATTGCTGGAAAAGCAAACAAGGAG-TACGAGTTTTGAGTAGAAGCTGTAACTT 454
Query 696 TAGGTATGAGCTTTACCCTTTT 717
||||||||||||||||||||||
Sbjct 455 TAGGTATGAGCTTTACCCTTTT 476
> Ahg479712 jgi|Araly1|479712|fgenesh2_kg.3__2413__AT3G21920.1
Length=884
Score = 78.7 bits (42), Expect = 6e-14
Identities = 69/82 (84%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 637 TTTCAAGATTGCTGGCATGGTAAACAAGGAGCT-AGAGTGTTGGGTAGTGGTTGTAACTT 695
|||||| | |||||| | |||||||||||| | ||||| ||| |||| ||||||||
Sbjct 765 TTTCAAAAATGCTGGAAAAGTAAACAAGGAG-TAAGAGTTTTGAGTAGAAACTGTAACTT 823
Query 696 TAGGTATGAGCTTTACCCTTTT 717
||||||||||||||||||||||
Sbjct 824 TAGGTATGAGCTTTACCCTTTT 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27753483576
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5