BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21910.1
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479711 jgi|Araly1|479711|fgenesh2_kg.3__2412__AT3G21910.1 739 0.0
Ahg479712 jgi|Araly1|479712|fgenesh2_kg.3__2413__AT3G21920.1 254 1e-66
Ahg930166 jgi|Araly1|930166|scaffold_302623.1 207 8e-53
Ahg479710 jgi|Araly1|479710|fgenesh2_kg.3__2411__AT3G21900.1 189 3e-47
> Ahg479711 jgi|Araly1|479711|fgenesh2_kg.3__2412__AT3G21910.1
Length=687
Score = 739 bits (400), Expect = 0.0
Identities = 441/461 (96%), Gaps = 2/461 (0%)
Strand=Plus/Plus
Query 79 ATACGTAGCGTTTCGTCTTTGAACATGACCAATTCCTATCTGAACCACAAATGCTTTGTC 138
||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 1 ATACGCAGCGTTTCGTCTTTGAACATGACCAATTCGTATCTAAACCACAAATGCTTAGTC 60
Query 139 AGTCAAGGGAAATACAAGCCAGGAAGTGCACATGAGAAAAGCCTAGAAGCTATCATCCAT 198
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 AGTCAAGGGAAATACAAGCCAGGAAGTGTGCATGAGAAAAGCCTAGAAGCTATCATCCAT 120
Query 199 TCCATCTCGGTTGGTGAAAATGTTAATAGCGGTTACGACATGATGTCATTTGGTGACGGT 258
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 121 TCCATCTCGGTTGGTGAAAATGTCAATAGCGGTTACGACATGATGTCTTTTGGTGACGGT 180
Query 259 CCAGATCTAGTCTGCGTTGTCCTCCAGTGCCGTGGTGACTCCTACGGGTCCAAGTGCCGC 318
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 CCAGATCTAGTCTGCGTTATCCTCCAATGCCGTGGTGACTCCTACGGGTCCAAGTGCCGC 240
Query 319 TCCTGCTTTGCCTCAGCCATGGCCGGGCTTCGTAGGAGATGTCCGAGATATAAAGGGGGA 378
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCTGCTTTGCCTCAGCCATAGCCGGGCTTCGTAGGAGATGTCCGAGATATAAAGGGGGA 300
Query 379 ATAATATGGTTCGACCAATGTCTTCTCGAGATTTCTTCGATCGATAATGTAGGGCAGCTC 438
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 ATAATATGGTTCGACCAATGTCTTCTCGAGATTTCTTCGATCGATACTGTAGGGCAGCTC 360
Query 439 AATTACGGTGATAGTTTCTGTATGTCCAACGCGAAGAATGTGGGAGATGATCCATTTTCT 498
||||||| ||| ||||| |||||||||||||| ||||||||||||||| |||||| | ||
Sbjct 361 AATTACGATGACAGTTTTTGTATGTCCAACGCAAAGAATGTGGGAGATAATCCATAT-CT 419
Query 499 -TTCATACTGAAGTGGGATACTCTCTTCGACAATATATCAC 538
||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATTCATACTGAAGTGGGATACTCTCTTCGACAATATATCAC 460
> Ahg479712 jgi|Araly1|479712|fgenesh2_kg.3__2413__AT3G21920.1
Length=884
Score = 254 bits (137), Expect = 1e-66
Identities = 619/841 (74%), Gaps = 76/841 (9%)
Strand=Plus/Plus
Query 1 ATGTACTCTTTATCTTCTGTATCAAAACACCTT-ATTTTGGT-C-CATATATTGGCCCTG 57
||||| |||| ||| |||||||||||| ||| || | | | | ||| ||| | ||
Sbjct 45 ATGTATTCTTCATCATCTGTATCAAAA-GGCTTCGTTCT-ATACGC-TATCGTGGTCGTG 101
Query 58 GTGGCCACACAACTGC-TTCTCATACGTAGCGTTTCGTCTTTGAACATGACCAATTCCTA 116
||| |||| ||||| | | ||| |||| |||||||| || | ||| | |||||||| ||
Sbjct 102 GTGACCACGCAACT-CATGCTCGTACGCAGCGTTTCTTCACTAAACCTTACCAATTCGTA 160
Query 117 TCTGAACCACAAATGCTTTGTCAGTCAAGGGAAATACAAGCCAGGAAGTGCAC-ATGAGA 175
||| | ||||||||||| ||||||| ||||||||||||||| ||||| | || | ||||
Sbjct 161 TCTCCAGCACAAATGCTTAGTCAGTCTAGGGAAATACAAGCCGGGAAGCG-ACTACGAGA 219
Query 176 AAAGCCTAGAAGCTATCATCCATTCCATCTCGGTTG--G-TGAAAA-T-GT-T-AATAGC 228
|| ||| || | ||||||||| | | ||| || | | |||| | || | || |
Sbjct 220 AATCCCTCGATGATATCATCCAAAGCTTTTCGAATGAAGATAAAAATTCGTATGGTTA-C 278
Query 229 GGTTAC-G--ACATG-ATGTCA---TTTGGTGACGGTCCAGATCTAGTCTGCGTTGTCCT 281
|| | | || | |||||| | ||| | | || ||| | ||| || | |||
Sbjct 279 CGTGCCGGTTTCA-GCATGTCAGCCTACGGTAAAGAACCTGATATGGTC-GCCATCACCT 336
Query 282 -CCAGTGCCGTGGT-GACTCCT-ACGGGTCCAAGTGCCGCTCCTGCTTTGCCTCAGCC-- 336
|||||||||| | |||| || |||| ||||||||| |||||| ||| | | |||
Sbjct 337 ACCAGTGCCGT-ATCGACT-CTCGCGGGCCCAAGTGCCAATCCTGCGTTGTCACCGCCGG 394
Query 337 --ATG-GCCGGGCTTCGTAGGAGATGTCCGAGATATAAAGGGGGAATAATATGGTTCGAC 393
||| | | ||||||| ||||||||||||| ||||||||| ||||||||||| ||||
Sbjct 395 TTATGAG-C-TTCTTCGTAAGAGATGTCCGAGAGATAAAGGGGCAATAATATGGTACGAC 452
Query 394 CAATGTCTTCTCGAGATTTCTTCGATC-GATA-ATGTAGGGCAGCTCAATTACGGTGATA 451
||||||||| | ||| |||||||| || |||| | | |||||| | ||||||| || |
Sbjct 453 CAATGTCTTGTGGAGTTTTCTTCG-TCAGATACTTCT-GGGCAGATTAATTACGACGACA 510
Query 452 GTTTCTGTATGTCCAACGCGAAGAA--TG-T-GGGAGATGATCCATTTTCTTTCATACTG 507
||||||||| ||| ||||||||| || | || | || | || || |||| | | |
Sbjct 511 ACTTCTGTATGCCCAGCGCGAAGAACCTGATCGGCA-AT--T-CAATTCCTTT-AGA-AG 564
Query 508 -AA-GTGGGATACTCTCTTCGACAATAT-ATC-ACGTATAGCTATCACTGAAAAGA-ATA 562
|| || | || ||| | || ||||| | | | | | || || ||||| |||| | |||
Sbjct 565 AAAGGTTGCAT-CTC-C-TCAACAATCTGA-CAAAG-ATGGCCGTCACT-AAAATAGATA 618
Query 563 AAAACTTAAAAGATACCAACAAACCGGCACTATACGGGGCGGGGGAGAAGAGGCTCGGGA 622
||||| || ||| || || ||||||| ||| || | ||||||||||||||| || ||||
Sbjct 619 AAAACATAGAAGGTATAAAAAAACCGGTACTGTATGCGGCGGGGGAGAAGAGACTGGGGA 678
Query 623 CAAAGAAGAAGATGTACGGAATGGTTCAGTGTACAGATGACTTATCTGTT-AAGGCTTGT 681
| |||||| | ||||||||||| |||||| | | ||||||||||||| |||| ||||
Sbjct 679 C---GAAGAATCTATACGGAATGGTGCAGTGTTCGGCTGACTTATCTGTTCAAGG-TTGT 734
Query 682 GAGGAGTGTCTGGT-TGCTAATATCTTGAAGTTTCAAAATTGCTGGAAAAGTGGTAAACG 740
| |||||| || | | | |||| || | |||||||| |||||||||| ||||||
Sbjct 735 AATGAGTGTATGCTAT-ATTATATAGTGCATTTTCAAAAATGCTGGAAAA---GTAAACA 790
Query 741 CGGTGCGAGGGTTTTGGA-TAGGAGCTGTAACTTTAGGTATGAGCTTTACCCTTTTGTTA 799
|| | || ||||| || ||| | ||||||||||||||||||||||||||||||| |||
Sbjct 791 AGGAGTAAGAGTTTT-GAGTAGAAACTGTAACTTTAGGTATGAGCTTTACCCTTTTATTA 849
Query 800 A 800
|
Sbjct 850 A 850
> Ahg930166 jgi|Araly1|930166|scaffold_302623.1
Length=532
Score = 207 bits (112), Expect = 8e-53
Identities = 355/466 (76%), Gaps = 41/466 (9%)
Strand=Plus/Plus
Query 346 CTTCGTAGGAGATGTCCGAGATATAAAGGGGGAATAATATGGTTCGACCAATGTCTTCTC 405
||||||| ||||||||||||| ||||||||| ||||||||||| ||||||||||||| |
Sbjct 36 CTTCGTAAGAGATGTCCGAGAGATAAAGGGGCAATAATATGGTACGACCAATGTCTTGTG 95
Query 406 GAGATTTCTTCGATCGATAATGTAGGGCAGCTCAATTACGGTGATAGTTTCTGTATGTCC 465
|| |||||||| | |||| | | |||||| ||||||||| || | ||||||||| ||
Sbjct 96 GACTTTTCTTCGTTAGATACTTTTGGGCAGATCAATTACGACGACAACTTCTGTATGCCC 155
Query 466 AACGCGAAGAA--TG-TGGGAGATGATCCATTTTCTTTCATACTGAAG-TGGGATAC-TC 520
| | |||| || || | || ||| || | |||| || | ||||| || | | ||
Sbjct 156 AGCACGAAAAACCTGATCGGCGAT--TCGA-TTTC-TT--T--TGAAGAAAGGTTGCGTC 207
Query 521 TCTTCGACAATAT-ATCACG-TATAGCTATCACTGAAAAGA-ATAAAAACTTAAAAGATA 577
|| |||||||| | | || | || || |||| ||||| | ||| |||| |||||| ||
Sbjct 208 TCCTCGACAATCTGA-CA-GAGATGGCCGTCAC-GAAAATAGATAGAAACATAAAAGGTA 264
Query 578 CCAACAAACCGGCACTATACGGGGCGGGGGAGAAGAGGCTCGGGACAAAGAAGAAGATGT 637
|| ||| | | ||| || | ||||||||||| ||| |||||| ||||| || |||
Sbjct 265 TAAAAAAAGCAGTACTGTATGCGGCGGGGGAGAGGAGACTCGGG---AAGAATAATCTGT 321
Query 638 ACGGAATGGTTCAGTG-TACAGATGACTTATCTGTTAAGGCTTGTGAGGAGTGTCTGGTT 696
|||||||||| ||||| | | | ||||||||||||| ||| |||| | |||||| | |
Sbjct 322 ACGGAATGGTGCAGTGCT-CTGGTGACTTATCTGTTCAGGGTTGTAATGAGTGTAT-G-- 377
Query 697 GC-TAATAT-C-TTGAAGTTTCAAAATTGCTGGAAAAGTGGTAAAC--GCG-GTGCGAGG 750
| || ||| | || | ||||||||||||||||||| | |||| | | || |||
Sbjct 378 ACATATTATACAGTGCATTTTCAAAATTGCTGGAAAA---GCAAACAAG-GAGTACGA-- 431
Query 751 GTTTTGGA-TAGGAGCTGTAACTTTAGGTATGAGCTTTACCCTTTT 795
||||| || ||| |||||||||||||||||||||||||||||||||
Sbjct 432 GTTTT-GAGTAGAAGCTGTAACTTTAGGTATGAGCTTTACCCTTTT 476
> Ahg479710 jgi|Araly1|479710|fgenesh2_kg.3__2411__AT3G21900.1
Length=753
Score = 189 bits (102), Expect = 3e-47
Identities = 278/359 (77%), Gaps = 28/359 (8%)
Strand=Plus/Plus
Query 1 ATGTACTCTTTATCTTCTGTATCAAAACA-CCTT-ATTTTGGTCCATATATTGGCCCTGG 58
|||||||||| ||| | ||||| ||| ||| ||||| ||| ||| |||||| |||
Sbjct 1 ATGTACTCTTCATCGCCCGTATC--GACATGCTTCTTTTTGATCCCTATCTTGGCCATGG 58
Query 59 TGGCCACACAACT-G-CTTCTCATACGTAGCGTTTCGTCTTTGAACATGACCAATTCCTA 116
||||||||||||| | ||| | || || | ||||||||||||||||||||||||| ||||
Sbjct 59 TGGCCACACAACTGGTCTT-T-ATGCGCACCGTTTCGTCTTTGAACATGACCAATGCCTA 116
Query 117 TCTGAACCACAAATGCTTTGTCAGTCAAGGGAA-ATACAAGCCAGGAAG-TGCACATGAG 174
| |||||||||||||||| | || ||| |||| ||||||||| ||||| || |||||
Sbjct 117 TTTGAACCACAAATGCTTAGCCAAACAA-GGAAGATACAAGCCGGGAAGTTG-GTATGAG 174
Query 175 AAA-AGCCTAGAAGCTATCATCCATTC-CATCTCGG--TTGGTGAAAATGTTA-ATAGCG 229
||| | || || ||||||| | || | | |||| ||||| | ||| | ||
Sbjct 175 AAACA-ACTCCAAACTATCAT--AGTCTC-TATCGGAAGCGGTGATGGTTTTACCCA-CG 229
Query 230 GTTACGACATGAT-GTCATTTGGTGACGGTCCAGATCTA-GTCTGCGTTGTCC-TCCAGT 286
||||||||||||| | | ||||||| | | | ||| || ||| ||| | || |||||
Sbjct 230 GTTACGACATGATGGGC-CTTGGTGATGATTCTGAT-TACGTCAGCG-TCACCAACCAGT 286
Query 287 GCCGTGGTGACTCCTACGGGTCCAAGTGCCGCTCCTGCTTTGCCTCAGCCATGGCCGGG 345
|||| || |||||||||||||||||||||||||||||||||||| | ||||| || |||
Sbjct 287 GCCGCGGGGACTCCTACGGGTCCAAGTGCCGCTCCTGCTTTGCCACCGCCATCGCAGGG 345
Score = 91.6 bits (49), Expect = 8e-18
Identities = 165/217 (76%), Gaps = 23/217 (11%)
Strand=Plus/Plus
Query 601 GCGGGGGAGA-AGAGGCTCGGGACAAAGAAGAAGATGTACGGAATGGTTCAGTGTACAGA 659
|||||||| | | ||| ||||||| ||||||| ||||||| ||||| ||||||| ||
Sbjct 535 GCGGGGGATACA-AGGTTCGGGAC---GAAGAAGTTGTACGGGATGGTGCAGTGTA-GGA 589
Query 660 -TGACTTATCTGTTAA-GGCTTGT-G-AGGAGTGTCTGGTTGCTAATA-TCTTGAAGTTT 714
|||| ||| | ||| | |||| | | | |||| ||| || || | |||| |||
Sbjct 590 CTGACATATATAATAATAG-TTGTCGAAAGTGTGT-TGGACACT--TAGCCGTGAAATTT 645
Query 715 CAAAATTGCTGGAAAAGTGGTAAACGCGGTGCGAGGGTTTTGGATAG-GAGCTGTAACTT 773
||| |||||||| | |||||||| || || || ||| ||| ||| | | ||||||||
Sbjct 646 CAAGATTGCTGG--CA-TGGTAAACAAGGAGCTAGAGTTATGGGTAGTG-GTTGTAACTT 701
Query 774 TAGGTATGAGCTTTACCCTTTTGTTA--A-TGCCAAG 807
|||||||||||||||||||||||||| | |||||||
Sbjct 702 TAGGTATGAGCTTTACCCTTTTGTTAGTAGTGCCAAG 738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30955808604
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5