BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21930.1
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479712 jgi|Araly1|479712|fgenesh2_kg.3__2413__AT3G21920.1 1262 0.0
Ahg930166 jgi|Araly1|930166|scaffold_302623.1 671 0.0
Ahg930168 jgi|Araly1|930168|scaffold_302625.1 553 9e-157
Ahg930165 jgi|Araly1|930165|scaffold_302622.1 422 3e-117
Ahg479710 jgi|Araly1|479710|fgenesh2_kg.3__2411__AT3G21900.1 108 9e-23
> Ahg479712 jgi|Araly1|479712|fgenesh2_kg.3__2413__AT3G21920.1
Length=884
Score = 1262 bits (683), Expect = 0.0
Identities = 823/889 (93%), Gaps = 15/889 (2%)
Strand=Plus/Plus
Query 20 aaacaccccacttggaaacacaaataaata-aaaataaattcaaaacaatGTATTCTTCA 78
||||||||| ||||| || || || ||||| ||||||||| |||||||||||||||||||
Sbjct 1 AAACACCCCTCTTGG-AA-AC-AA-AAATAGAAAATAAATCCAAAACAATGTATTCTTCA 56
Query 79 TCATCTGTATCAAAACGCTTCGTTCTAGT-CCCTATTGTGGTCGTGGTGACCACACAACT 137
||||||||||||||| ||||||||||| | | |||| ||||||||||||||||| |||||
Sbjct 57 TCATCTGTATCAAAAGGCTTCGTTCTA-TACGCTATCGTGGTCGTGGTGACCACGCAACT 115
Query 138 CCTCCTGGTACGTAACGTTTCTTCACTAAACCTTACCAATTCGTATCTTCACCACAAATG 197
| | || ||||| | ||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 116 CATGCTCGTACGCAGCGTTTCTTCACTAAACCTTACCAATTCGTATCTCCAGCACAAATG 175
Query 198 CGTAGTCAATCAAGGGAAATACAAGCCAGGAAGCAAGTACGAGAAATCCCTCGATGATAT 257
| |||||| || ||||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct 176 CTTAGTCAGTCTAGGGAAATACAAGCCGGGAAGCGACTACGAGAAATCCCTCGATGATAT 235
Query 258 CATCCAAAGCTTTTCGAATAAAGATAAAGATTCGTATGGTTTTCGTACCGGTTACAGCAT 317
||||||||||||||||||| |||||||| |||||||||||| ||| |||||| ||||||
Sbjct 236 CATCCAAAGCTTTTCGAATGAAGATAAAAATTCGTATGGTTACCGTGCCGGTTTCAGCAT 295
Query 318 GA-AGGCCTACGGTAAAGAACCTGATATGGTCTCCATCACCTACCAGTGCCGTATCGACT 376
| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 296 GTCAG-CCTACGGTAAAGAACCTGATATGGTCGCCATCACCTACCAGTGCCGTATCGACT 354
Query 377 CTCGTGGGCCCAAGTGCCAGTCCTGCGTTGTCACGGCCGGTTATGAGCTTCTTCGTAAGA 436
|||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 355 CTCGCGGGCCCAAGTGCCAATCCTGCGTTGTCACCGCCGGTTATGAGCTTCTTCGTAAGA 414
Query 437 GATGTCCGAGATATAAAGAGGCAATAATATGGTACGACCAATGTCTTGTGGAGTTTTCTT 496
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GATGTCCGAGAGATAAAGGGGCAATAATATGGTACGACCAATGTCTTGTGGAGTTTTCTT 474
Query 497 CGTTAGATACTTCTGGGCAGATCAATTACGACGACAACTTCTGTATGCCTAGCGCGAAGA 556
||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 475 CGTCAGATACTTCTGGGCAGATTAATTACGACGACAACTTCTGTATGCCCAGCGCGAAGA 534
Query 557 ACCTGATCGGCAATTCAATCTCTCTT--GAAGAAAGGTTGCATCTCCTCAACAATCTTAC 614
||||||||||||||||||| || ||| ||||||||||||||||||||||||||||| ||
Sbjct 535 ACCTGATCGGCAATTCAAT-TC-CTTTAGAAGAAAGGTTGCATCTCCTCAACAATCTGAC 592
Query 615 AAAGATAGCCGTCACGAAAATAGATAAAAACATAGAAGGTATaaaaaaaCCAGTACTGTA 674
|||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 593 AAAGATGGCCGTCACTAAAATAGATAAAAACATAGAAGGTATAAAAAAACCGGTACTGTA 652
Query 675 TGCGGCGGGGGAGAAGAGACTCGGGACGAA-AAGTCTATACGGAATGGTGCAATGTTCGG 733
||||||||||||||||||||| |||||||| || |||||||||||||||||| |||||||
Sbjct 653 TGCGGCGGGGGAGAAGAGACTGGGGACGAAGAA-TCTATACGGAATGGTGCAGTGTTCGG 711
Query 734 CTGACTTATCTGTTCAGGGTTGTAATGAGTGTATGTTATATTATATAGTGCATTTTCAAG 793
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 712 CTGACTTATCTGTTCAAGGTTGTAATGAGTGTATGCTATATTATATAGTGCATTTTCAAA 771
Query 794 AGTGCTGGGAAAGTAAACAAGGAGTAAGAGTTTTGAGTAGAAGCTGTAACTTTAGGTATG 853
| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 772 AATGCTGGAAAAGTAAACAAGGAGTAAGAGTTTTGAGTAGAAACTGTAACTTTAGGTATG 831
Query 854 AGCTTTACCCTTTTATTAGCCCCAAGGGTTCTTACTATACCAAGTTCTA 902
|||||||||||||||||| ||| |||||| ||||||| |||||||||||
Sbjct 832 AGCTTTACCCTTTTATTAACCCGAAGGGTCCTTACTACACCAAGTTCTA 880
> Ahg930166 jgi|Araly1|930166|scaffold_302623.1
Length=532
Score = 671 bits (363), Expect = 0.0
Identities = 443/482 (92%), Gaps = 4/482 (1%)
Strand=Plus/Plus
Query 424 CTTCTTCGTAAGAGATGTCCGAGATATAAAGAGGCAATAATATGGTACGACCAATGTCTT 483
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 33 CTTCTTCGTAAGAGATGTCCGAGAGATAAAGGGGCAATAATATGGTACGACCAATGTCTT 92
Query 484 GTGGAGTTTTCTTCGTTAGATACTTCTGGGCAGATCAATTACGACGACAACTTCTGTATG 543
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 93 GTGGACTTTTCTTCGTTAGATACTTTTGGGCAGATCAATTACGACGACAACTTCTGTATG 152
Query 544 CCTAGCGCGAAGAACCTGATCGGCAATTCAATCTCTCTTGAAGAAAGGTTGCATCTCCTC 603
|| ||| |||| |||||||||||| |||| || ||| ||||||||||||||| |||||||
Sbjct 153 CCCAGCACGAAAAACCTGATCGGCGATTCGATTTCTTTTGAAGAAAGGTTGCGTCTCCTC 212
Query 604 AACAATCTTACAAAGATAGCCGTCACGAAAATAGATAAAAACATAGAAGGTATaaaaaaa 663
||||||| ||| |||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 213 GACAATCTGACAGAGATGGCCGTCACGAAAATAGATAGAAACATAAAAGGTATAAAAAAA 272
Query 664 CCAGTACTGTATGCGGCGGGGGAGAAGAGACTCGGGACGAA-AAGTCTATACGGAATGGT 722
|||||||||||||||||||||||| ||||||||||| ||| || ||| |||||||||||
Sbjct 273 GCAGTACTGTATGCGGCGGGGGAGAGGAGACTCGGGAAGAATAA-TCTGTACGGAATGGT 331
Query 723 GCAATGTTC-GGCTGACTTATCTGTTCAGGGTTGTAATGAGTGTATGTTATATTATATAG 781
||| || || || |||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 332 GCAGTGCTCTGG-TGACTTATCTGTTCAGGGTTGTAATGAGTGTATGACATATTATACAG 390
Query 782 TGCATTTTCAAGAGTGCTGGGAAAGTAAACAAGGAGTAAGAGTTTTGAGTAGAAGCTGTA 841
||||||||||| | |||||| |||| |||||||||||| |||||||||||||||||||||
Sbjct 391 TGCATTTTCAAAATTGCTGGAAAAGCAAACAAGGAGTACGAGTTTTGAGTAGAAGCTGTA 450
Query 842 ACTTTAGGTATGAGCTTTACCCTTTTATTAGCCCCAAGGGTTCTTACTATACCAAGTTCT 901
|||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||
Sbjct 451 ACTTTAGGTATGAGCTTTACCCTTTTATCAACCCCAAGGGTCCTTACTATACCAAGTTCT 510
Query 902 AA 903
||
Sbjct 511 AA 512
> Ahg930168 jgi|Araly1|930168|scaffold_302625.1
Length=427
Score = 553 bits (299), Expect = 9e-157
Identities = 366/399 (92%), Gaps = 2/399 (1%)
Strand=Plus/Plus
Query 50 aaaataaattcaaaacaatGTATTCTTCATCATCTGTATCAAAACGCTTCGTTCTAGT-C 108
||||| ||| ||||||||||||||| ||||||||| ||||||||||||| ||||| | |
Sbjct 4 AAAATCAATCCAAAACAATGTATTCGTCATCATCTATATCAAAACGCTTTGTTCT-TTAC 62
Query 109 CCTATTGTGGTCGTGGTGACCACACAACTCCTCCTGGTACGTAACGTTTCTTCACTAAAC 168
| || || |||||||||||||||||||||||||| |||| | |||||||||||| |||
Sbjct 63 CTTACCGTCGTCGTGGTGACCACACAACTCCTCCTTGTACACAGCGTTTCTTCACTCAAC 122
Query 169 CTTACCAATTCGTATCTTCACCACAAATGCGTAGTCAATCAAGGGAAATACAAGCCAGGA 228
||||||||||||||||| |||||||||||| |||||| || ||||||||||||||| |||
Sbjct 123 CTTACCAATTCGTATCTCCACCACAAATGCTTAGTCAGTCTAGGGAAATACAAGCCGGGA 182
Query 229 AGCAAGTACGAGAAATCCCTCGATGATATCATCCAAAGCTTTTCGAATAAAGATAAAGAT 288
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 183 AGCGAGTACGAGAAATCCCTCGATGATATCATCCAAAGCTTTTCAAATAAAGATAAAAAT 242
Query 289 TCGTATGGTTTTCGTACCGGTTACAGCATGAAGGCCTACGGTAAAGAACCTGATATGGTC 348
|||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 243 TCGTATGGGTTTCGTACTGGTTTCAGCATGAAGGCCTACGGTAAAGAACCTGATATGGTC 302
Query 349 TCCATCACCTACCAGTGCCGTATCGACTCTCGTGGGCCCAAGTGCCAGTCCTGCGTTGTC 408
||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 303 GCCATCACTTACCAGTGCCGTGTCGACTCTCGCGGGCCCAAGTGCCAGTCCTGCGTTGTC 362
Query 409 ACGGCCGGTTATGAGCTTCTTCGTAAGAGATGTCCGAGA 447
|| ||||||||||||||||||||||||||||||||||||
Sbjct 363 ACCGCCGGTTATGAGCTTCTTCGTAAGAGATGTCCGAGA 401
> Ahg930165 jgi|Araly1|930165|scaffold_302622.1
Length=1390
Score = 422 bits (228), Expect = 3e-117
Identities = 328/375 (87%), Gaps = 11/375 (3%)
Strand=Plus/Plus
Query 50 aaaataaattcaaaacaatGTATTCTTCATCATCTGTATCAAAACGCTTCGTTCTAGTCC 109
||||||||| ||||||||||||||||| ||| |||| ||||||||||||| |||||||||
Sbjct 4 AAAATAAATCCAAAACAATGTATTCTTTATCCTCTGAATCAAAACGCTTCATTCTAGTCC 63
Query 110 CTAT-TGTGGTCGTGGTGACCACACAACTCCTCCTGGTACGTAACGTTTCTTCACTAAAC 168
|||| | ||||||||||| || |||||||||| || |||| | ||||||||||||||||
Sbjct 64 CTATCT-TGGTCGTGGTGGCCGCACAACTCCTTCTCGTACACAGCGTTTCTTCACTAAAC 122
Query 169 CTTACCAATTCGTATCTTCACCACAAATGCGTAGTCAATCAAGGGAAATACAAGCCAGGA 228
||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| |||
Sbjct 123 CTTACCAATTCGTATCTCCAGCACAAATGCTTAGTCAATCAAGGGAAATACAAGCCGGGA 182
Query 229 AGCAAGTACGAGAAATCCCTCGATGATATCATCCAAAGCTTTTCGAATAAAGATAAAGAT 288
||| || |||||||| ||||| |||||||||| ||||||||||| || || ||| |
Sbjct 183 AGCCAGCACGAGAAAGCCCTCAATGATATCATACAAAGCTTTTC-AA-AA-GAT-----T 234
Query 289 TCGTATGGTTTTCGTACCGGTTACAGCATGAAGGCCTACGGTAAAGAACCTGATATGGTC 348
|| | ||||||| |||||||| ||||||| ||||||| |||||||| |||||||| |||
Sbjct 235 -CGGAAGGTTTTCATACCGGTTTCAGCATGGAGGCCTATGGTAAAGAGCCTGATATAGTC 293
Query 349 TCCATCACCTACCAGTGCCGTATCGACTCTCGTGGGCCCAAGTGCCAGTCCTGCGTTGTC 408
|||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 294 GCCATCACCTACCAGTGTCGTATCGATTCTCGCGGGCCCAAGTGCCACTCCTGCGTTGTC 353
Query 409 ACGGCCGGTTATGAG 423
|| ||||||| ||||
Sbjct 354 ACCGCCGGTTCTGAG 368
> Ahg479710 jgi|Araly1|479710|fgenesh2_kg.3__2411__AT3G21900.1
Length=753
Score = 108 bits (58), Expect = 9e-23
Identities = 161/209 (77%), Gaps = 14/209 (7%)
Strand=Plus/Plus
Query 671 TGTATGCGGCGGGGGAGA-AGAGACTCGGGACGAA-AAGTCTATACGGAATGGTGCAATG 728
||||||| |||||||| | | || |||||||||| |||| | ||||| |||||||| ||
Sbjct 527 TGTATGCCGCGGGGGATACA-AGGTTCGGGACGAAGAAGT-TGTACGGGATGGTGCAGTG 584
Query 729 TTCGG-CTGACTTATCTGTTCAGGGTTGT--AATGAGTGTATGTTATA-TTATATAGTGC 784
| || ||||| ||| | | | ||||| || | |||| || | | ||| |||
Sbjct 585 -TAGGACTGACATATATAATAATAGTTGTCGAAAGTGTGT-TG-GACACTTA-GCCGTGA 640
Query 785 ATTTTCAAGAGTGCTGGGAAAGTAAACAAGGAG-TAAGAGTTTTGAGTAGAAGCTGTAAC 843
| |||||||| |||||| | |||||||||||| | |||||| || |||| | ||||||
Sbjct 641 AATTTCAAGATTGCTGGCATGGTAAACAAGGAGCT-AGAGTTATGGGTAGTGGTTGTAAC 699
Query 844 TTTAGGTATGAGCTTTACCCTTTTATTAG 872
|||||||||||||||||||||||| ||||
Sbjct 700 TTTAGGTATGAGCTTTACCCTTTTGTTAG 728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33471921126
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5