BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21945.1
Length=473
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318931 jgi|Araly1|318931|fgenesh1_pm.C_scaffold_3001947 512 8e-145
Ahg914473 jgi|Araly1|914473|Al_scaffold_0001_4727 285 2e-76
> Ahg318931 jgi|Araly1|318931|fgenesh1_pm.C_scaffold_3001947
Length=771
Score = 512 bits (277), Expect = 8e-145
Identities = 311/328 (95%), Gaps = 0/328 (0%)
Strand=Plus/Plus
Query 132 GGATGTGAGCGGTGATGCAAAATCATTCAACGAGAAGACGAGGACTCTCCTCTATAAGCT 191
|||||||||||||||| |||| || |||||||||||||||||| ||||||||||||||||
Sbjct 444 GGATGTGAGCGGTGATACAAATTCGTTCAACGAGAAGACGAGGGCTCTCCTCTATAAGCT 503
Query 192 GAAGGAGAAAGCAAGTAGTAAAGAAAACATCCCCAACAAGAAAAATTACTTATATGCAAC 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 GAAGGAGAAAGCAAGTAGTAAAGAAAACATCCCCAACAAGAAAAATTACTTATATGCAAC 563
Query 252 AGGGGAGGAAAGTCTCGGGAAGATGAAACTGTACGCAATGGTGCAATGTACGCAAGACTT 311
|||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||
Sbjct 564 AGGGGAGGAAAGTCTCGGGAAGATGAAATTGTACGCAATGGTGCAGTGTACACAAGACTT 623
Query 312 ATCAATTAAAAATTGTAATGTGTGTTTGAACTGGATTCTGGGGAAGCTTCCCAAATGTTG 371
|||||| |||||||||| ||||||||||||||||||||| | |||| |||||||||| ||
Sbjct 624 ATCAATAAAAAATTGTAGTGTGTGTTTGAACTGGATTCTTGCGAAGTTTCCCAAATGCTG 683
Query 372 CAACGATAAACAAGGAGGAAGATTTTTGAGTACGAGTTGTAATTTTAGGTATGAGCTTTA 431
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 684 CAACGGTAAACAAGGAGGAAGATTTTTGAGTACAAGTTGTAATTTTAGGTATGAGCTTTA 743
Query 432 CCTCTTTGTAAAACTTACGACTATTTAA 459
|| |||||||||||||||||||| ||||
Sbjct 744 CCCCTTTGTAAAACTTACGACTAGTTAA 771
Score = 211 bits (114), Expect = 3e-54
Identities = 126/132 (95%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 1 ATGATCTCTATCTCAATTTTAGGTGACGTTGTCGTCTTTAGCGGTGACAATTCCATCTAC 60
||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 196 ATGATTTCTATCTCAATTTTAGGCGACGTTGTCGTTTTTAGCGGTGATAATTCCATCTAC 255
Query 61 GTCAAGCTCCAGTGCCGGGGGGACTCCTCCACATCCACGTGCCGCTCTTGCCTTGACACC 120
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 256 GTCAAGCTCCAGTGCCGGGGGGACTCCTCCACATCCAAGTGCCGCTCTTGCCTTGATACC 315
Query 121 GCCTTCTCTGGG 132
||||||||||||
Sbjct 316 GCCTTCTCTGGG 327
> Ahg914473 jgi|Araly1|914473|Al_scaffold_0001_4727
Length=810
Score = 285 bits (154), Expect = 2e-76
Identities = 281/342 (82%), Gaps = 10/342 (3%)
Strand=Plus/Plus
Query 133 GATGTGAGCGGTGATGCAAAATCATTCAACGAGAAGACGAGGACTCTCCTCTATAAGCTG 192
||||||||||| || |||| || |||||| |||| |||| ||||||||||||||||||
Sbjct 442 GATGTGAGCGGCAATACAAAGTCGTTCAACAAGAACACGAACACTCTCCTCTATAAGCTG 501
Query 193 AAGGAGAAAGCAAGTAGTAAAGAA-AACATCCCCA-ACAAGAAAAATTACTTATATGCAA 250
||||||||||||| ||| ||||| || | | | |||| || | | || | ||||| |
Sbjct 502 AAGGAGAAAGCAACTAGGAAAGAGCAAGAGCAGTACACAA-AAGACT-ACATGTATGCGA 559
Query 251 CAGGGGAGGAAAGTCTCGGGAAGATGAAACTGTACGCAATGGTGCAATGTACGCAAGACT 310
| ||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| || |
Sbjct 560 CCGGGGAAGAAAGTCTCGGGACGATGAAATTGTACGCAATGGTGCAATGTACGCAGGATT 619
Query 311 TATCAATTAAAAATTGTAATGTGTGTTTGAACTGGATTCTGGGGAAGCTTCCCAAATGTT 370
|||| || |||||||||| |||||||||| | ||||| ||||||||||||| | ||| |
Sbjct 620 TATCGATCAAAAATTGTAGTGTGTGTTTGGATTGGATAATGGGGAAGCTTCCGAGATGCT 679
Query 371 GCAACGATAAACAAGGAGGAAGATTTT-TGAGTACGAGTTGTAATTTTAGGTATGAGCTT 429
|||||| |||||||||||||||| ||| | | | | | |||||||||||||| ||||||
Sbjct 680 GCAACGGTAAACAAGGAGGAAGAGTTTATAA-TCCCAACTGTAATTTTAGGTACGAGCTT 738
Query 430 TACC-TCTTTGTAAAA-CTTAC--GACTATTTAACGAGAGCT 467
|||| | ||||||||| |||| |||| | ||| |||||||
Sbjct 739 TACCCTTTTTGTAAAAACTTAAAAGACTGTCTAATGAGAGCT 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17131859461
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5