BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21945.1 Length=473 Score E Sequences producing significant alignments: (Bits) Value Ahg318931 jgi|Araly1|318931|fgenesh1_pm.C_scaffold_3001947 512 8e-145 Ahg914473 jgi|Araly1|914473|Al_scaffold_0001_4727 285 2e-76 > Ahg318931 jgi|Araly1|318931|fgenesh1_pm.C_scaffold_3001947 Length=771 Score = 512 bits (277), Expect = 8e-145 Identities = 311/328 (95%), Gaps = 0/328 (0%) Strand=Plus/Plus Query 132 GGATGTGAGCGGTGATGCAAAATCATTCAACGAGAAGACGAGGACTCTCCTCTATAAGCT 191 |||||||||||||||| |||| || |||||||||||||||||| |||||||||||||||| Sbjct 444 GGATGTGAGCGGTGATACAAATTCGTTCAACGAGAAGACGAGGGCTCTCCTCTATAAGCT 503 Query 192 GAAGGAGAAAGCAAGTAGTAAAGAAAACATCCCCAACAAGAAAAATTACTTATATGCAAC 251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 504 GAAGGAGAAAGCAAGTAGTAAAGAAAACATCCCCAACAAGAAAAATTACTTATATGCAAC 563 Query 252 AGGGGAGGAAAGTCTCGGGAAGATGAAACTGTACGCAATGGTGCAATGTACGCAAGACTT 311 |||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||| Sbjct 564 AGGGGAGGAAAGTCTCGGGAAGATGAAATTGTACGCAATGGTGCAGTGTACACAAGACTT 623 Query 312 ATCAATTAAAAATTGTAATGTGTGTTTGAACTGGATTCTGGGGAAGCTTCCCAAATGTTG 371 |||||| |||||||||| ||||||||||||||||||||| | |||| |||||||||| || Sbjct 624 ATCAATAAAAAATTGTAGTGTGTGTTTGAACTGGATTCTTGCGAAGTTTCCCAAATGCTG 683 Query 372 CAACGATAAACAAGGAGGAAGATTTTTGAGTACGAGTTGTAATTTTAGGTATGAGCTTTA 431 ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 684 CAACGGTAAACAAGGAGGAAGATTTTTGAGTACAAGTTGTAATTTTAGGTATGAGCTTTA 743 Query 432 CCTCTTTGTAAAACTTACGACTATTTAA 459 || |||||||||||||||||||| |||| Sbjct 744 CCCCTTTGTAAAACTTACGACTAGTTAA 771 Score = 211 bits (114), Expect = 3e-54 Identities = 126/132 (95%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 1 ATGATCTCTATCTCAATTTTAGGTGACGTTGTCGTCTTTAGCGGTGACAATTCCATCTAC 60 ||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| Sbjct 196 ATGATTTCTATCTCAATTTTAGGCGACGTTGTCGTTTTTAGCGGTGATAATTCCATCTAC 255 Query 61 GTCAAGCTCCAGTGCCGGGGGGACTCCTCCACATCCACGTGCCGCTCTTGCCTTGACACC 120 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 256 GTCAAGCTCCAGTGCCGGGGGGACTCCTCCACATCCAAGTGCCGCTCTTGCCTTGATACC 315 Query 121 GCCTTCTCTGGG 132 |||||||||||| Sbjct 316 GCCTTCTCTGGG 327 > Ahg914473 jgi|Araly1|914473|Al_scaffold_0001_4727 Length=810 Score = 285 bits (154), Expect = 2e-76 Identities = 281/342 (82%), Gaps = 10/342 (3%) Strand=Plus/Plus Query 133 GATGTGAGCGGTGATGCAAAATCATTCAACGAGAAGACGAGGACTCTCCTCTATAAGCTG 192 ||||||||||| || |||| || |||||| |||| |||| |||||||||||||||||| Sbjct 442 GATGTGAGCGGCAATACAAAGTCGTTCAACAAGAACACGAACACTCTCCTCTATAAGCTG 501 Query 193 AAGGAGAAAGCAAGTAGTAAAGAA-AACATCCCCA-ACAAGAAAAATTACTTATATGCAA 250 ||||||||||||| ||| ||||| || | | | |||| || | | || | ||||| | Sbjct 502 AAGGAGAAAGCAACTAGGAAAGAGCAAGAGCAGTACACAA-AAGACT-ACATGTATGCGA 559 Query 251 CAGGGGAGGAAAGTCTCGGGAAGATGAAACTGTACGCAATGGTGCAATGTACGCAAGACT 310 | ||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| || | Sbjct 560 CCGGGGAAGAAAGTCTCGGGACGATGAAATTGTACGCAATGGTGCAATGTACGCAGGATT 619 Query 311 TATCAATTAAAAATTGTAATGTGTGTTTGAACTGGATTCTGGGGAAGCTTCCCAAATGTT 370 |||| || |||||||||| |||||||||| | ||||| ||||||||||||| | ||| | Sbjct 620 TATCGATCAAAAATTGTAGTGTGTGTTTGGATTGGATAATGGGGAAGCTTCCGAGATGCT 679 Query 371 GCAACGATAAACAAGGAGGAAGATTTT-TGAGTACGAGTTGTAATTTTAGGTATGAGCTT 429 |||||| |||||||||||||||| ||| | | | | | |||||||||||||| |||||| Sbjct 680 GCAACGGTAAACAAGGAGGAAGAGTTTATAA-TCCCAACTGTAATTTTAGGTACGAGCTT 738 Query 430 TACC-TCTTTGTAAAA-CTTAC--GACTATTTAACGAGAGCT 467 |||| | ||||||||| |||| |||| | ||| ||||||| Sbjct 739 TACCCTTTTTGTAAAAACTTAAAAGACTGTCTAATGAGAGCT 780 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17131859461 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5