BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21950.1
Length=1300
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479715 jgi|Araly1|479715|fgenesh2_kg.3__2416__AT3G21950.1 1676 0.0
Ahg948089 jgi|Araly1|948089|scaffold_704318.1 324 1e-87
> Ahg479715 jgi|Araly1|479715|fgenesh2_kg.3__2416__AT3G21950.1
Length=1175
Score = 1676 bits (907), Expect = 0.0
Identities = 1103/1194 (92%), Gaps = 28/1194 (2%)
Strand=Plus/Plus
Query 101 TGAAAAGCGTAAACGAAATGATAGTGAAAATGGATTTTCCTGGTTGCATCAAAGTGGCTG 160
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1 TGAAGAGCGTAAACGAAATGATAGTGAAAATGGATTTTCCTGGGTGCATCAAAGTGGCCG 60
Query 161 ACTTGGGATGCTCTTCCGGAGAAAATACATTCTTGGTTATGTCCGAAATCGTTAACACAA 220
|||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 61 ACTTGGGATGTTCTTCCGGAGAAAACACGTTCTTGGTTATGTCTGAAATCGTTAACACAA 120
Query 221 TCATTACAACATACCAACAAAATGGTCAAAATCTACCGGAGATCGATTGTTGCCTGAACG 280
|||| |||| |||||||||||| |||||||| | ||| |||||||||||||| |||||||
Sbjct 121 TCATAACAATATACCAACAAAAGGGTCAAAACCCACCAGAGATCGATTGTTGTCTGAACG 180
Query 281 ATCTTCCAGAGAACGACTTCAACACAACTTTCAAGTTGATCCCTTCCTTCCACGAGAAGC 340
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 ATCTTCCAGACAACGACTTCAACACAACTTTCAAGTTGATCCCTTCCTTCCACGAGAAAC 240
Query 341 TGAAGATGAATGTTAAAGGAAATTGCTATGTCTCAGGATGC-CCAGGCTCATTCTACACA 399
||||||||||| |||||||||| |||| ||||||||||| | ||||||||||||||||||
Sbjct 241 TGAAGATGAATATTAAAGGAAAGTGCTTTGTCTCAGGAT-CTCCAGGCTCATTCTACACA 299
Query 400 AGGCTTTTCCCAAGCAAATCTCTTCATTTTGTCCATTCATCTTTTTGTCTCCATTGGCTT 459
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 300 AGGCTTTTCCCAAGCAAATCTCTTCATTTTGTCCATTCATCTTTTTGTCTCCACTGGCTT 359
Query 460 TCTAAAGTTCCTGATGGGCTTGAGGAAAATAAGAAGAACGTGTATCTTAGAAGTCCATGC 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCTAAAGTTCCTGATGGGCTTGAGGAAAATAAGAAGAACGTGTATCTTAGAAGTCCATGC 419
Query 520 CCTCCAAATTTGTACGAGAGTTATTGGAATCAGTTTAAGAAAGATTTCTCAATGTTTCTA 579
||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||
Sbjct 420 CCTCCAAATTTGTACGAGAGTTATTTGAATCAGTTTAAGAATGATTTCTCAACGTTTCTA 479
Query 580 AGAATGCGTGCGGAAGAGACAATGCCTAGTGGACGCATGGCTCTCACTTTAGTTGGCAGA 639
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 480 AGAATGCGTGCGGAAGAGACAATGCCTAGTGGACGCATGGCTCTCACTTTAGTGGGCAGA 539
Query 640 AAAACTTTGGACCCTTTATCCAAAGAGTGTTTCAAAGATTGGTCGTTGGTTTCTGATTCC 699
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 540 AAAACTTTGGACCCTTTATCTAAAGATTGTTTCAAAGATTGGTCGTTGGTATCTGATTCC 599
Query 700 CTCCTCGATTTGGTGTCTGAGGGAGTTGTGAAGGAATCAGATTTGGAATCTTTCAACTTG 759
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 600 CTCCTCGATTTGGTGTCTGAGGGAGTTGTGAAGGAATCAGATTTGGAATCTTTCAATTTG 659
Query 760 CCGTATTACAGTCCTGATGAAAGTGAGGTGAAGGAAGTTATCGAGAACGAGGGCTCATTC 819
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 660 CCGTATTACAATCCTGATGAAAGTGAGGTGAAGGAAGTTATCGACAACGAGGGCTCATTC 719
Query 820 GAGATCAAAAATTTTGAGACAATATTTGGACTTCTCTTTTCATACAAAACTGGTCATAGT 879
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| ||||
Sbjct 720 GAGATCAATAATTTTGAGACAATATTTGGGCTTCTCTTTTCGTACAAAACTGGTCGTAGT 779
Query 880 GAAGTGAAAGATGAT-G--ATGATGATGTGGACCATTCACGTCGATTTGAAGTGGTTAAA 936
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAAGTGAAAGATGATTGTGATGATGATGTGGACCATTCACGTCGATTTGAAGTGGTTAAA 839
Query 937 ACGAGGGCTAATATGACAAGATCCATCATTGAACCGATGCTTGTTGCTCATTTTGGAGAA 996
| ||||||||| || ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 840 AAGAGGGCTAACCTGGCAAGATCCATCATTGAACCAATGCTTGTTGCTCATTTTGGAGAC 899
Query 997 GCCATTATTGATCGGCTCTTTGACAAGTATATATATCATGCATGTCAACGTTACGATACC 1056
|||||||| |||||||| ||||| |||||||||||||||||| | | |||||| ||||||
Sbjct 900 GCCATTATCGATCGGCTGTTTGAGAAGTATATATATCATGCAGGCCGACGTTATGATACC 959
Query 1057 TTGCGCAACAAACCAACCGTTAATTTCTTTGTTTCGTTGACTAGGAAGTGATGGATCGTC 1116
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct 960 TTGCGCAACAAACCAACCGTTAATTTCTTTGTTTCGTTAACTAGGAAGTGAAGGATTGTC 1019
Query 1117 GCTCTATTGCTGCCAATAATTGATGAAAAATAAAGGATAATAATGATCCTTGGTGATGAC 1176
| |||| | | ||||||||||||||||||| | |||||||||||| ||
Sbjct 1020 GGTCTA---C--C-AATAATTGATGAAAAATAA----T------GATCCTTGGTGAGGAT 1063
Query 1177 TGGCTACCCCAGCCAATATTAATATGTTATTTATTGTGCCTTTAATTTCCCTGTTATGTA 1236
|||| | | ||||||| | ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1064 TGGCCAACAAAGCCAAT-T-AATATGTTATTTATTGTGCTTTTAATTTCCCTGTTATGTA 1121
Query 1237 TTGGTGTGCTTTGAATGTGT-TTGAAT-T-T--CATTATCTGTCTCAATAAAAC 1285
||| |||||||| ||||||| || ||| | | || ||||| ||||||||||||
Sbjct 1122 TTGTTGTGCTTTAAATGTGTGTTTAATATATGTCAGTATCTATCTCAATAAAAC 1175
> Ahg948089 jgi|Araly1|948089|scaffold_704318.1
Length=829
Score = 324 bits (175), Expect = 1e-87
Identities = 325/393 (83%), Gaps = 27/393 (7%)
Strand=Plus/Plus
Query 719 AGGGAGTTGTGAAGGAATCAGATTTGGAATCTTTCAACTTGCCGTAT-TACAGTCCTGAT 777
|||| |||||||||||||||||| ||||||||||||||||||| | | |||| |||||||
Sbjct 436 AGGGGGTTGTGAAGGAATCAGATATGGAATCTTTCAACTTGCCAT-TCTACAATCCTGAT 494
Query 778 GAAAGTGAGGTGAAGG-AAGTTATCGAGAACGAGGGCTCATTCGAGATCAAAAATTTTGA 836
||||| || || ||| |||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct 495 GAAAGCGAAGT-TAGGAAAGTTATCGAAAACGAGGGCTCTTTCGAGATCAACAATTTCAA 553
Query 837 GACAATATTTGGACTTCTCTTTTCATACAAAACTGGTCATAGTGAAGTGAAAGATGATGA 896
|||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 554 GACAATATTTGGACTTCTCTTTTCATACAAAACTGGCCTTACTGAAGTGAAAGATGATGA 613
Query 897 TGATGATGTGGACCATTCACGTCGATTTGAAGTGGTTAAAACGAGGGCTAATATGACAAG 956
| | | | | | | ||||||||| |||||| |||| | || || | |||
Sbjct 614 TC-TC--G---A---T-C--G---ATTTGAAGTAATTAAAAAGAGGACCAACATCATAAG 658
Query 957 ATCCATCATTGAACCGATGCTTGTTGCTCATTTTGGAGA-AGCCATTATTGATCGGCTCT 1015
|||||||| |||||| ||||||| ||||||||||||||| | || | || ||||| | |
Sbjct 659 ATCCATCACTGAACCAATGCTTGCTGCTCATTTTGGAGACA-CCGTCATGGATCGTTTGT 717
Query 1016 TTGACAAGTATATATATCATGC-ATGTC-AACGTTACGATACCTTGCGCAACAAACCAAC 1073
| |||||||||| |||| || | | | | ||||||||||||| |||||||||| ||||||
Sbjct 718 TCGACAAGTATACATATAAT-CTA-GCCCAACGTTACGATACTTTGCGCAACATACCAAC 775
Query 1074 CGTT-AATTTCTTTGTTTCGTTGACTAGGAAGT 1105
||| |||| |||||||||||||||||||||||
Sbjct 776 GGTTCAATT-CTTTGTTTCGTTGACTAGGAAGT 807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48606719175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5