BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21960.2
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318931 jgi|Araly1|318931|fgenesh1_pm.C_scaffold_3001947 372 4e-102
Ahg922044 jgi|Araly1|922044|scaffold_103325.1 104 2e-21
Ahg922041 jgi|Araly1|922041|scaffold_103322.1 104 2e-21
Ahg922909 jgi|Araly1|922909|scaffold_104190.1 71.3 2e-11
Ahg318499 jgi|Araly1|318499|fgenesh1_pm.C_scaffold_3001515 69.4 6e-11
Ahg351421 jgi|Araly1|351421|fgenesh1_pg.C_scaffold_6002014 67.6 2e-10
Ahg314947 jgi|Araly1|314947|fgenesh1_pm.C_scaffold_1003727 67.6 2e-10
> Ahg318931 jgi|Araly1|318931|fgenesh1_pm.C_scaffold_3001947
Length=771
Score = 372 bits (201), Expect = 4e-102
Identities = 603/784 (77%), Gaps = 79/784 (10%)
Strand=Plus/Plus
Query 1 ATGTCTTTATCCTCTTCTGTAACGAAAC-ATCT-TATTTCGG-CCTCCATATTAGCCATA 57
||||||| || | ||| |||||| |||| | || | |||||| || | || || |||||
Sbjct 1 ATGTCTTCAT-C-CTT-TGTAACAAAACGA-CTCT-TTTCGGTCC-CTATCTTGGCCATG 54
Query 58 GTGGCAATGCAACTCCCTTCTGTACACAGTGTTTTATCCCTAAACGAGACCAATGCA-TA 116
||||| ||||||||| ||| |||||| ||||||| ||||||||| | || |||| | ||
Sbjct 55 GTGGCCATGCAACTCTCTTTTGTACAGTGTGTTTTGTCCCTAAACCAAACAAATG-AGTA 113
Query 117 TCTGCACCACATATGCATTAA-CGGTGAAGGGACATTCAAGTCGGGGAGTCCATACGAGA 175
||| |||||||||||| |||| | || |||| |||| |||||| || ||| | |||||
Sbjct 114 TCTACACCACATATGCCTTAATC-GTCAAGGAACATACAAGTCAGGTAGTAAAGACGAG- 171
Query 176 AAGAAATC-AAACAA-CTCAT-----TGATTT-TTTGTC-ATCGTTTA-TCAAAGACTAT 225
||| ||| ||||| ||||| |||||| | | || || |||| | | | | |
Sbjct 172 -AGAGATCTTAACAATCTCATCCAAATGATTTCTATCTCAAT--TTTAGGCGACG-TTGT 227
Query 226 AGTTTTGTCCACGGCGTTAGTGGTATTGGTCCCGATGATATCAACGTCAAGTTCCAGTGC 285
||||| | | ||| ||| || | | || ||| |||||||| ||||||||
Sbjct 228 CGTTTT-T--A--GCG---GTGATAAT--T-CC------ATCTACGTCAAGCTCCAGTGC 270
Query 286 CGAGGCGA-TACCTTACA-AGCCAAGTGCCGCTCTTGCCTCGCCACCGCCTTCTCCGAGA 343
|| || || | || | || | ||||||||||||||||||| | ||||||||||| | |
Sbjct 271 CGGGGGGACT-CC-TCCACATCCAAGTGCCGCTCTTGCCTTGATACCGCCTTCTCTG-G- 326
Query 344 TTCGTAGTAAATGTCCGAACAACAAAGGGAGAATAATATGGTACGATAACTGTCATCTCG 403
| | | |||||| |||||| || ||||||||||||||||| |||||| ||||
Sbjct 327 ---G-A--AGATGTCCCAACAAC-AA---AGAATAATATGGTACGACAACTGTGTTCTC- 375
Query 404 AC--CTTT--CGTCAATCTATACATATGGCCAGATCGATTACAAGAACAATTTCTATATG 459
|| ||| ||| || |||| |||||| ||||||||||| ||||||||||||||||
Sbjct 376 ACAATTTTAACGT--TTC-ATACGTATGGCAAGATCGATTACCAGAACAATTTCTATATT 432
Query 460 TACAACGCGAAGGATGTGAGGGGCGATAAAAAGTCTTTCTACAAGAACATGAAGGCAT-T 518
| ||| || ||||||||||| || |||| ||| || ||| || |||| | || ||| | |
Sbjct 433 TCCAATGCAAAGGATGTGAGCGGTGATACAAATTCGTTCAACGAGAAGACGAGGGC-TCT 491
Query 519 CCTTC-ATAAGCTAAAGGCGAAAGCAAGTAGTAAGGAAAACAAACCCTACGTGAAAGACT 577
|| || ||||||| |||| ||||||||||||||| ||||||| ||| || |||| | |
Sbjct 492 CC-TCTATAAGCTGAAGGAGAAAGCAAGTAGTAAAGAAAACATCCCCAACAAGAAAAATT 550
Query 578 A-TATGTATGCAGCA-GGAAGGGAAAGTCTTGGGACGGTGAAATTGTACGCAATGGTGCA 635
| | | |||||| || || | ||||||||| |||| | ||||||||||||||||||||||
Sbjct 551 ACT-TATATGCAACAGGGGA-GGAAAGTCTCGGGAAGATGAAATTGTACGCAATGGTGCA 608
Query 636 GTGTACGCAGGACTTATCGCTTAAAAATTGCACTGTGTGTTTGGACTGGATTAT-GACGA 694
|||||| || |||||||| | |||||||| | |||||||||| |||||||| | | |||
Sbjct 609 GTGTACACAAGACTTATCAATAAAAAATTGTAGTGTGTGTTTGAACTGGATTCTTG-CGA 667
Query 695 AGCTTCCCGAATGCTGCAATGGTAAACAAGGAGGAAGAGTTTTGAGTCCAAGCTGTAATT 754
|| ||||| |||||||||| |||||||||||||||||| |||||||| |||| |||||||
Sbjct 668 AGTTTCCCAAATGCTGCAACGGTAAACAAGGAGGAAGATTTTTGAGTACAAGTTGTAATT 727
Query 755 TTAG 758
||||
Sbjct 728 TTAG 731
> Ahg922044 jgi|Araly1|922044|scaffold_103325.1
Length=1429
Score = 104 bits (56), Expect = 2e-21
Identities = 82/95 (86%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 807 GACCAAGCGATTGCAAATTAACAACTTTATGGGTATTATTCAAGAAACAAGAAGTTTGAG 866
||| |||| | ||| ||| | |||| |||||| ||||||||| || || |||||||||||
Sbjct 851 GACAAAGCAAGTGCTAATCACCAACCTTATGGCTATTATTCATGAGACTAGAAGTTTGAG 910
Query 867 GAAGAACGGCATTATGATCCCGTCCCCAAGGAGCG 901
|||||||||||||||||||||||| | ||||||||
Sbjct 911 GAAGAACGGCATTATGATCCCGTCTCTAAGGAGCG 945
> Ahg922041 jgi|Araly1|922041|scaffold_103322.1
Length=1639
Score = 104 bits (56), Expect = 2e-21
Identities = 82/95 (86%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 807 GACCAAGCGATTGCAAATTAACAACTTTATGGGTATTATTCAAGAAACAAGAAGTTTGAG 866
||| |||| | ||| ||| | |||| |||||| ||||||||| || || |||||||||||
Sbjct 851 GACAAAGCAAGTGCTAATCACCAACCTTATGGCTATTATTCATGAGACTAGAAGTTTGAG 910
Query 867 GAAGAACGGCATTATGATCCCGTCCCCAAGGAGCG 901
|||||||||||||||||||||||| | ||||||||
Sbjct 911 GAAGAACGGCATTATGATCCCGTCTCTAAGGAGCG 945
> Ahg922909 jgi|Araly1|922909|scaffold_104190.1
Length=664
Score = 71.3 bits (38), Expect = 2e-11
Identities = 60/70 (86%), Gaps = 3/70 (4%)
Strand=Plus/Plus
Query 822 AATT-AACAACTTTATGGGTATTATTCAAGAA-ACAAGAAGTTTGAGGAAGAACGGCATT 879
|||| |||| ||||| || || |||||| ||| | | ||||||||||||||||||||||
Sbjct 187 AATTCAACATCTTTAAGGTTAGTATTCATGAATCCGA-AAGTTTGAGGAAGAACGGCATT 245
Query 880 ATGATCCCGT 889
||||||||||
Sbjct 246 ATGATCCCGT 255
> Ahg318499 jgi|Araly1|318499|fgenesh1_pm.C_scaffold_3001515
Length=819
Score = 69.4 bits (37), Expect = 6e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 862 TTGAGGAAGAACGGCATTATGATCCCGTCCCCAAGGAGCG 901
||||||||||||||||||||||||||||| ||||||||||
Sbjct 10 TTGAGGAAGAACGGCATTATGATCCCGTCTCCAAGGAGCG 49
> Ahg351421 jgi|Araly1|351421|fgenesh1_pg.C_scaffold_6002014
Length=1035
Score = 67.6 bits (36), Expect = 2e-10
Identities = 64/77 (83%), Gaps = 3/77 (4%)
Strand=Plus/Plus
Query 824 TTAA-CAACTTTATGGGTATTATTCAAGAAACAAG-AAGTTTGAGGAAGAACGGCATTAT 881
|||| |||| || || ||||||||| |||| | ||| ||||||||||||||||||||
Sbjct 751 TTAATCAACAGTAAGGTTATTATTCATGAAA-TTGAAAGCTTGAGGAAGAACGGCATTAT 809
Query 882 GATCCCGTCCCCAAGGA 898
|||||||| |||||||
Sbjct 810 GATCCCGTATCCAAGGA 826
> Ahg314947 jgi|Araly1|314947|fgenesh1_pm.C_scaffold_1003727
Length=819
Score = 67.6 bits (36), Expect = 2e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 862 TTGAGGAAGAACGGCATTATGATCCCGTCCCCAAGGAGC 900
||||||||||||||||||||||||||||| |||||||||
Sbjct 10 TTGAGGAAGAACGGCATTATGATCCCGTCTCCAAGGAGC 48
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49597915017
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5