BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21970.1
Length=916
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479716 jgi|Araly1|479716|fgenesh2_kg.3__2417__AT3G21970.1 1378 0.0
Ahg896853 jgi|Araly1|896853|Al_scaffold_0005_819 662 0.0
> Ahg479716 jgi|Araly1|479716|fgenesh2_kg.3__2417__AT3G21970.1
Length=909
Score = 1378 bits (746), Expect = 0.0
Identities = 858/911 (94%), Gaps = 12/911 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTCAAATATTTTTGGATCGGTCCCTATTTTGGTCGTGGTGGCTATACAACTTCTT 60
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGTTTTCAAATATTTTTGGATCGGTCCCTATCTTGGTCGTGGTGGCTATACAACTTCTC 60
Query 61 CTTGTACACAATGTTTCTTCCCAGAACGTTACCAATGACTATTTGAACCACCAATGCAAC 120
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CTTTTACACAATGTTTCTTCCCAGAACGTTACCAATGAGTATTTGAACCACCAATGCAAC 120
Query 121 AACACCCAAGGGAGATACACGCATGGGAGTACGTTTGAGAAGAACCTCAACCAAGTTCTT 180
||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 121 AACACCCAAGGGAAATACACTCATGGGAGTACGTTCGAGAAGAACCTCAACCAAGTCCTC 180
Query 181 CATAACATCTCTAACCTCGATCTTAGATACGGTTACGCCTACGTCTCTAATGTTGTGGCT 240
|||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 181 CATAACATCTCTGACCTCGATCTTAGATACGGTTACGCCTACATCTCCAATGTTGTGGCT 240
Query 241 TACAAAGTTAGCAAGGATCCCAACATTGTCTTCGTTTTGCTCCAGTGCCGCGGTGACTCC 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 TACAAAGTTAGCAAGGATCCCAACATTGTCTTTGTTTTGCTCCAGTGCCGCGGTGACTCC 300
Query 301 TTTGGGTCCAAATGCCACTCCTGCCTCAGCACAGCCGTCTCTGGGCTTCGTGAGAGATGT 360
||||||||||| |||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 301 TTTGGGTCCAAGTGCCACTCCTGCCTTAGGACAGCCGTTTCTGGGCTTCGTGAGAGATGT 360
Query 361 CCAGGAAACAGAGGAGCAACAATATGGTACGACCAATGTCTTTTGGAGATTTCTTCGGTG 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCGGGAAACAGAGGAGCAACAATATGGTACGACCAATGTCTTTTGGAGATTTCTTCGGTG 420
Query 421 GATTCCGAGGGGAGGATCCATTACAAACGTATGTTCTATATGCAAAACCCGACGAACGTC 480
||||| ||||||||||||||||||||| |||||||||||||||||||||| | |||||||
Sbjct 421 GATTCTGAGGGGAGGATCCATTACAAAAGTATGTTCTATATGCAAAACCCAAAGAACGTC 480
Query 481 ACCAACGATCCCAAACGGTTCGAAGATAAAAGAAGGGATCTCCTCCACAAGCTAATGCTG 540
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 ACCAACGATCCCAAGCGGTTCGAAGATAAAAGGAGGGATCTCCTCCACAAGCTAATGCTG 540
Query 541 GAAGCCACCAAGGATAGCAAGGAAAACGGCGCCAAGGGACTGTTGTACGCAGTGGGTGAG 600
|||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||
Sbjct 541 GAAGCCACCAAGGATAGCAAGGAAAATGCCGCCAAGGGACTGTTGTATGCAGTGGGTGAG 600
Query 601 ATGAGGATTGGAAGAAATAAGATGTATGCAATGGTGCAGTGTACGCAAGACTTATGGCAG 660
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 601 ATGAGGATTGGCAGAAATAAGATGTATGCAGTGGTGCAGTGTACGCAAGACTTATGGCAG 660
Query 661 ACTGGTTGCCATGTGTGTCTAGAATGGATTACGCAGATGAAATATGGAGAGTTCTTCTAC 720
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 661 ACTGGTTGCCATGTGTGTCTAGAATGGATCACGCAGATGAAATATGGAGAGTACTTCTAC 720
Query 721 CGTAAACCAGGAGGGAGAGTTTGTGGTAGGAGTTGTAGCTTTAGGTATGAGCTTTACCCT 780
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 721 CGTAAACCAGGAGGGAGGGTTTATGGTAGGAGTTGTAGCTTTAGGTATGAGCTTTACCCT 780
Query 781 TTTCTTAGAAGGTAAA-TGACTTTTTTCTTT-----CTATTTAGTCTGA-GCTCCATTTC 833
|||||||| ||||||| | |||||||| ||| ||||||| | || |||||||| |
Sbjct 781 TTTCTTAGTAGGTAAAGT-ACTTTTTTTTTTTTTTTCTATTTAATGAGAAGCTCCATTAC 839
Query 834 TCTCCCCCTCTCACTCTCTCATATAT-T-GCGAAGTGTTTAAATAAAGT-CAATGGGTGA 890
|||||||||||||||||||||||||| | ||||||||||||||||| || ||||||| ||
Sbjct 840 TCTCCCCCTCTCACTCTCTCATATATATTGCGAAGTGTTTAAATAA-GTGCAATGGGCGA 898
Query 891 ATAAAAAATGT 901
|||||||||||
Sbjct 899 ATAAAAAATGT 909
> Ahg896853 jgi|Araly1|896853|Al_scaffold_0005_819
Length=765
Score = 662 bits (358), Expect = 0.0
Identities = 646/780 (83%), Gaps = 40/780 (5%)
Strand=Plus/Plus
Query 30 TATTTTGGTCGTGGTGGCTATACAACTTCTTCTTGTACACAATGTTTCTTCCCAGAACGT 89
||| |||| ||||||||||||||||| || ||| ||| || |||||||| ||||||||
Sbjct 12 TATATTGGCCGTGGTGGCTATACAAC-TC--CTTATACGCAGCGTTTCTTCTCAGAACGT 68
Query 90 TACCAATGACTATTTGAACCACCAATGCAACAACACCCAAGGGAGATACACGCATGGGAG 149
||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 69 TACCAATGAGTATTTGAACCACCAATGCAACAACACCCAAGGGACCTACACGCGGGGGAG 128
Query 150 TACGTTTGAGAAGAACCTCAACCAAGTTC-TTCATAACATCTCTAACC-TCGATCTTAG- 206
||||||||||||||| |||||||||| || | ||||||||||| ||| || ||||| |
Sbjct 129 TACGTTTGAGAAGAATCTCAACCAAG-TCATCCATAACATCTCCCACCTTC-ATCTTCGC 186
Query 207 ATACGGTTACGCCTACGTCTCTAATGTTGTGGCTTACAAAGTTAGCAAGGATCCCAACAT 266
| |||||||| |||||| || |||||||||||||| ||||||| ||||||||||||||
Sbjct 187 A-ACGGTTACACCTACGAATCCAATGTTGTGGCTTATGAAGTTAGTAAGGATCCCAACAT 245
Query 267 TGTCTTCGTTTTGCTCCAGTGCCGCGGTGACTCCTTTGGGTCCAAATGCCACTCCTGCCT 326
|||||||||||||||||||||||| |||||||| | ||||| || ||||||||||||||
Sbjct 246 TGTCTTCGTTTTGCTCCAGTGCCGTGGTGACTCGTACGGGTCTAAGTGCCACTCCTGCCT 305
Query 327 C-AGCACAGCCGTCTCTGGGCTTCGTGAGAGATGTCCAGGAAACAGAGGAGCAACAATAT 385
| | |||||| ||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 306 CCAT-ACAGCCCTCTCTGGGCTTCGTGAGAGATGTCCGGGAAACAGAGGAGCAATAATAT 364
Query 386 GGTACGACCAATGTCTTTTGGAGATTTCTTCGGTGGATTCCGAGGGGAGGATCCATTACA 445
|||||||||| ||| |||||||||||||||| | || || |||||||||| | ||||
Sbjct 365 GGTACGACCAGTGTGTTTTGGAGATTTCTTCAATTAATACCAAGGGGAGGATTCGTTACG 424
Query 446 A-ACGTATGTTCTATATG-CAAAACCCGACGAACGTCACCAACGATCCCAAACGGTTCGA 503
| | || | ||| ||||| | || || || ||| || | | |||| | | | ||| |
Sbjct 425 ATA-GTTTTTTCAATATGACCAA-CCTGAAGAATGTGAGTAGCGATGCGGAGCAGTTTAA 482
Query 504 AGATAAAAG-AAGGGATCTCCTCCACAAGCTAATGCTGGAAGCCACCAAGGATAGCAAG- 561
| ||||||| || | ||||| || |||||||| || | ||||||| |||||| | |||
Sbjct 483 AAATAAAAGGAAAG-ATCTCTTCAACAAGCTATTGGTAAAAGCCACTAAGGAT-GTAAGC 540
Query 562 GAAAACGGCGCCAAGGGACTGTTGTACGCAGTGGGTGAGATGAGGATTGGAAGAAATAAG 621
||||| | || || || ||||||||||||||||| |||||| || |||||||||
Sbjct 541 GAAAA-G-----AATGGT-TG--GTACGCAGTGGGTGAGACGAGGATAGGGAGAAATAAG 591
Query 622 ATGTATGCAATGGTGCAGTGTACGCAAGACTTATGGCAGA-CTGGTTGCCATGTGTGTCT 680
||||||||||| |||||||| ||| ||||||| || || | |||||| ||||||||||
Sbjct 592 TTGTATGCAATGATGCAGTGTGCGCTAGACTTAACGCCGAAC-GGTTGCTATGTGTGTCT 650
Query 681 AGAATGGATTACGCAGATGAAATATGGAGAGTT-CTTCT---ACCGTAAACCAGGAGGGA 736
|||||||||||| | | | | |||| | |||| || || |||||| || ||||||||
Sbjct 651 AGAATGGATTAC-CGG-T-AGGTATG-ATAGTTACTACTTCGACCGTAGACAAGGAGGGA 706
Query 737 GAGTTTGTGG-TAGGAGTTGTAGCTTTAGGTATGAGCTTTACCCTTTTCTTAGAAGGTAA 795
|||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 707 GAGTTT-TGGGTAGGAGTTGTAGCTTAAGGTATGAGCTTTACCCTTTTCTTAGAAGGTAA 765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33967519047
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5