BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G21980.1

Length=678
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg905224 jgi|Araly1|905224|Al_scaffold_0003_2352                   1053    0.0  


> Ahg905224 jgi|Araly1|905224|Al_scaffold_0003_2352
Length=678

 Score = 1053 bits (570),  Expect = 0.0
 Identities = 643/679 (95%), Gaps = 2/679 (0%)
 Strand=Plus/Plus

Query  1    ATGATTTCAAAATTTGGATCGGTCCATATCTTGGCTGTGGTAGCCATACAACTCCTAATT  60
            ||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1    ATGCTTTCAATATTTGGATCGGTCCATATCTTGGCTGTGGTGGCCATACAACTCCTAATT  60

Query  61   ATACCAAGCGTTTCGTCCCTTAACCTTACAAATGCGTATTTGCACCACAAATGTAACAAC  120
            |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATACCAAGTGTTTCATCCCTTAACCTTACAAATGCGTATTTGCACCACAAATGTAACAAC  120

Query  121  ACCGAAGGAAAATATAGCCACGGGAGTGCGTTTGAGAAATATATCAACTTAGCTCTCCGT  180
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ACCGAAGGAAAATATAGCTACGGGAGTGCGTTTGAGAAATATATCAACTTAGCTCTCCGT  180

Query  181  GCCATCGATTCAGACAATTATCTCAATGGTTTTGCCTACATCGAGAGAGGTGAGGATCCC  240
            ||||| ||||||||||||| |||||||||||| | ||  || ||||||||||||||||||
Sbjct  181  GCCATGGATTCAGACAATTTTCTCAATGGTTTCGGCTTTATTGAGAGAGGTGAGGATCCC  240

Query  241  AATAAAGTCTTCGTCATGTACCAATGTCGCGGCGACTCCTACGGGTCTAAGTGCAAATCC  300
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct  241  AATAAAGTCTTCGTCATGTACCAATGTCGCGGTGACTCCTACGGGTCTAAGTGCCAATCC  300

Query  301  TGCATAAGCGCTGCCATCTCTGGGATTGATTACGAGAACGATTTCTATTTGTCCAACCCG  360
            ||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  301  TGCATAAGCGCTGCCGTCTCAGGGATTGATTACGAGAACGATTTCTATTTGTCAAACCCG  360

Query  361  AACGACGTGAACGATAAGGAGTTGTTCAACAAGGAGACCTCGGCTCTCTTGGAGGAGCTA  420
            ||  ||||||| |||||||||||||||||||| ||||| ||||||||||||| |||||||
Sbjct  361  AAAAACGTGAATGATAAGGAGTTGTTCAACAAAGAGACGTCGGCTCTCTTGGTGGAGCTA  420

Query  421  ACAAATAAAGCCACTGATAAAAATAACATGATAGGCAATAAATTTGTGCTGTACGCGGCA  480
            |||||||||||||| ||||||||||||||| |||| ||| ||||||||||||||||||| 
Sbjct  421  ACAAATAAAGCCACCGATAAAAATAACATGGTAGGGAATCAATTTGTGCTGTACGCGGCG  480

Query  481  GGGGATAAGAGAATTGGAACGAAGAATGTGTATGCAATGGTGCAATGTACGAAAGACTTA  540
            ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  481  GGGGAAAAGAGAATTGGAACGAAGAATGTGTATGCAATGGTGCAGTGTACGAAAGACTTA  540

Query  541  GTGACTACAACTT-CTGCTGCGTGTTTCGAATGGATTTTCAAGATGTTTTCAAAGTGCTG  599
            ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  GTGACTACAACTTGC-GCTGCGTGTTTCGAATGGATTTTCAAGATGTTTTCAAAGTGCTG  599

Query  600  TGAAGGAAAGCAAGGAGGGAGAGTTTTGGGTACGAGCTGTAACTTTAGGTATGAGTTATA  659
            ||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  600  TGATGGAAAGCGAGGAGGGAGAGTTTTGGGTACGACCTGTAACTTTAGGTATGAGTTATA  659

Query  660  TCCCTTTCTTAGAAATTAA  678
            |||||||||||||||||||
Sbjct  660  TCCCTTTCTTAGAAATTAA  678



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24894264801


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5