BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21985.1 Length=1185 Score E Sequences producing significant alignments: (Bits) Value Ahg318935 jgi|Araly1|318935|fgenesh1_pm.C_scaffold_3001951 523 1e-147 > Ahg318935 jgi|Araly1|318935|fgenesh1_pm.C_scaffold_3001951 Length=801 Score = 523 bits (283), Expect = 1e-147 Identities = 313/328 (95%), Gaps = 0/328 (0%) Strand=Plus/Plus Query 171 ATGTTTTCAACTTTTGGATCGGTCCCTATCTTAACCGTGGTGGCCATACAACTCTTTCTT 230 |||| | ||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 1 ATGTCTACAACTTTTGGATCGGTCCCTATCTTGACCGTGGTAGCCATACAACTCTTTCTT 60 Query 231 ATACGCAATGTTTTGTCCCTGAACCTTACTAATGCGTATCTGCACCACAAATGTAACAAC 290 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 61 ATACGCAATGTTTTGTCCCTGAACCTTACTAATGCGTATCTGCACCACAAATGCAACAAC 120 Query 291 ACCCAAGGGATATACAAGCGGGGAAGTGCGTTCGAGAAAAATCTGAACATAGCCCTCCGT 350 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 121 ACCCAAGGGATATACAAGCGGGGAACTGCGTTCGAGAAAAATCTAAACATAGCCCTCCGT 180 Query 351 ACTGTCATTTTTAATGGCGATTTTCGCACTGGTTTCCGATATGGGGATGTAGGTGAGGAT 410 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 181 ACTGTCATTTTTAATGGCGATTTTCGCACCGGTTTCCGATATGGCGATGTAGGTGAGGAT 240 Query 411 CCCAATACCGTCTTTGTTATGTACCAATGTCGTGGTGACTCCTATTGGTCCAACTGCCGA 470 || ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 241 CCAAATACTGTCTTTGTCATGTACCAATGTCGCGGTGACTCCTATTGGTCCAACTGCCGA 300 Query 471 ACTTGTGTCACTACCGCCCTCTCAGGGG 498 ||||| ||||| |||||||||||||||| Sbjct 301 ACTTGCGTCACCACCGCCCTCTCAGGGG 328 Score = 481 bits (260), Expect = 6e-135 Identities = 304/326 (93%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 804 ATCGATTACGAGAACGATTTCTATTTGTCCAACCCAAAGAACGTGAGCAATCGAGAGTTG 863 |||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||| Sbjct 430 ATCGATTACGAGAACGATTTCTTTTTGTCAAACCCAAAAAACGTGAGCAATCGAGAGTTG 489 Query 864 TTCAACAGGGAGACATCCGCTCTCCTTGAGAAGCTAACAACTAAAGCCACTGATAAAAAG 923 ||||||||||||||||| |||||||||||||||||||||| |||||| || ||||||||| Sbjct 490 TTCAACAGGGAGACATCGGCTCTCCTTGAGAAGCTAACAAATAAAGCGACCGATAAAAAG 549 Query 924 AACATAGACGGTGCCAATCAATTGGTTCTGTATGCGGCAGGAGAGAAGAGAATTGGGACG 983 |||||||| |||||||||||||||||| |||| || || || |||||||||||||||||| Sbjct 550 AACATAGATGGTGCCAATCAATTGGTTTTGTACGCAGCGGGGGAGAAGAGAATTGGGACG 609 Query 984 AAAAAGGTGTACGCAATGGTGCAGTGTACAAAAGACTTAGTGTTTACAACTTGCTCTTCG 1043 || |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 610 AAGAAGGTGTACGCAATGGTGCAGTGTACGAAAGACTTAGTGTTTACAACTTGCTCATCG 669 Query 1044 TGTTTGGAATGGATTTTCAGGATGTATTCAGACTGTTGTGATGGTAAACAAGGAGGAAGA 1103 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 670 TGTTTGGAATGGATTTTCAGGATGTATTCAGAGTGCTGTGATGGTAAACAAGGAGGAAGA 729 Query 1104 GTTTTGGGTACGAGTTGTAATTTTAG 1129 ||||| |||| |||||||| ||||| Sbjct 730 GTTTTAAGTACTAGTTGTAACTTTAG 755 Score = 163 bits (88), Expect = 2e-39 Identities = 98/103 (95%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 624 GGCTAGTACAAATGCACTATTATATGAAATTCAACCATGCAATATTGTTCTTGACTGTGG 683 |||||||||||| |||||||||||||||||| |||||| |||||||||| |||||||||| Sbjct 327 GGCTAGTACAAAAGCACTATTATATGAAATTAAACCATACAATATTGTTTTTGACTGTGG 386 Query 684 TGTTGATATTTATGGATATGCATATGACAGCTTCGAAAGAGAT 726 ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 387 TGTTGATATATATGGATATGCATATGACAGCTTCGAAAGAGAT 429 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44222583720 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5