BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21985.1
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318935 jgi|Araly1|318935|fgenesh1_pm.C_scaffold_3001951 523 1e-147
> Ahg318935 jgi|Araly1|318935|fgenesh1_pm.C_scaffold_3001951
Length=801
Score = 523 bits (283), Expect = 1e-147
Identities = 313/328 (95%), Gaps = 0/328 (0%)
Strand=Plus/Plus
Query 171 ATGTTTTCAACTTTTGGATCGGTCCCTATCTTAACCGTGGTGGCCATACAACTCTTTCTT 230
|||| | ||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1 ATGTCTACAACTTTTGGATCGGTCCCTATCTTGACCGTGGTAGCCATACAACTCTTTCTT 60
Query 231 ATACGCAATGTTTTGTCCCTGAACCTTACTAATGCGTATCTGCACCACAAATGTAACAAC 290
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 ATACGCAATGTTTTGTCCCTGAACCTTACTAATGCGTATCTGCACCACAAATGCAACAAC 120
Query 291 ACCCAAGGGATATACAAGCGGGGAAGTGCGTTCGAGAAAAATCTGAACATAGCCCTCCGT 350
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 121 ACCCAAGGGATATACAAGCGGGGAACTGCGTTCGAGAAAAATCTAAACATAGCCCTCCGT 180
Query 351 ACTGTCATTTTTAATGGCGATTTTCGCACTGGTTTCCGATATGGGGATGTAGGTGAGGAT 410
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 181 ACTGTCATTTTTAATGGCGATTTTCGCACCGGTTTCCGATATGGCGATGTAGGTGAGGAT 240
Query 411 CCCAATACCGTCTTTGTTATGTACCAATGTCGTGGTGACTCCTATTGGTCCAACTGCCGA 470
|| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 CCAAATACTGTCTTTGTCATGTACCAATGTCGCGGTGACTCCTATTGGTCCAACTGCCGA 300
Query 471 ACTTGTGTCACTACCGCCCTCTCAGGGG 498
||||| ||||| ||||||||||||||||
Sbjct 301 ACTTGCGTCACCACCGCCCTCTCAGGGG 328
Score = 481 bits (260), Expect = 6e-135
Identities = 304/326 (93%), Gaps = 0/326 (0%)
Strand=Plus/Plus
Query 804 ATCGATTACGAGAACGATTTCTATTTGTCCAACCCAAAGAACGTGAGCAATCGAGAGTTG 863
|||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||
Sbjct 430 ATCGATTACGAGAACGATTTCTTTTTGTCAAACCCAAAAAACGTGAGCAATCGAGAGTTG 489
Query 864 TTCAACAGGGAGACATCCGCTCTCCTTGAGAAGCTAACAACTAAAGCCACTGATAAAAAG 923
||||||||||||||||| |||||||||||||||||||||| |||||| || |||||||||
Sbjct 490 TTCAACAGGGAGACATCGGCTCTCCTTGAGAAGCTAACAAATAAAGCGACCGATAAAAAG 549
Query 924 AACATAGACGGTGCCAATCAATTGGTTCTGTATGCGGCAGGAGAGAAGAGAATTGGGACG 983
|||||||| |||||||||||||||||| |||| || || || ||||||||||||||||||
Sbjct 550 AACATAGATGGTGCCAATCAATTGGTTTTGTACGCAGCGGGGGAGAAGAGAATTGGGACG 609
Query 984 AAAAAGGTGTACGCAATGGTGCAGTGTACAAAAGACTTAGTGTTTACAACTTGCTCTTCG 1043
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 610 AAGAAGGTGTACGCAATGGTGCAGTGTACGAAAGACTTAGTGTTTACAACTTGCTCATCG 669
Query 1044 TGTTTGGAATGGATTTTCAGGATGTATTCAGACTGTTGTGATGGTAAACAAGGAGGAAGA 1103
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 670 TGTTTGGAATGGATTTTCAGGATGTATTCAGAGTGCTGTGATGGTAAACAAGGAGGAAGA 729
Query 1104 GTTTTGGGTACGAGTTGTAATTTTAG 1129
||||| |||| |||||||| |||||
Sbjct 730 GTTTTAAGTACTAGTTGTAACTTTAG 755
Score = 163 bits (88), Expect = 2e-39
Identities = 98/103 (95%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 624 GGCTAGTACAAATGCACTATTATATGAAATTCAACCATGCAATATTGTTCTTGACTGTGG 683
|||||||||||| |||||||||||||||||| |||||| |||||||||| ||||||||||
Sbjct 327 GGCTAGTACAAAAGCACTATTATATGAAATTAAACCATACAATATTGTTTTTGACTGTGG 386
Query 684 TGTTGATATTTATGGATATGCATATGACAGCTTCGAAAGAGAT 726
||||||||| |||||||||||||||||||||||||||||||||
Sbjct 387 TGTTGATATATATGGATATGCATATGACAGCTTCGAAAGAGAT 429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44222583720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5