BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22040.1
Length=774
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319073 jgi|Araly1|319073|fgenesh1_pm.C_scaffold_3002089 697 0.0
> Ahg319073 jgi|Araly1|319073|fgenesh1_pm.C_scaffold_3002089
Length=729
Score = 697 bits (377), Expect = 0.0
Identities = 635/753 (84%), Gaps = 43/753 (6%)
Strand=Plus/Plus
Query 31 CTCGTTTCTTTCCATATCTTGGCCATACAACTCTTCATAC-CTAGCGTTGCATCACTGAA 89
||||||||||||||||||||||| ||||||||| |||||| | |||||| |||| |||||
Sbjct 7 CTCGTTTCTTTCCATATCTTGGCTATACAACTCCTCATACGC-AGCGTTTCATCCCTGAA 65
Query 90 TCTTACAAATGTGTACCTTCACCACAAATGCCGGGTTGGTCAAGGTAAATACCACCCGGG 149
| |||| |||| ||| || |||||||||| ||||||| ||||| |||||||| || ||
Sbjct 66 TATTACTAATGAGTATCTGAACCACAAATGTCGGGTTGAACAAGGAAAATACCAGCCAGG 125
Query 150 AAGTAGA-TACGAGAAAGACTTCGACTCTCTCACCAGT-TTCGTCGCT-GCTAATAAGTT 206
|||| || |||||||||||| || ||||| ||||| || | |||||| | || || ||
Sbjct 126 AAGT-GAGTACGAGAAAGACCTCAACTCTATCACCGGTAAT-GTCGCTACCGAA-AAATT 182
Query 207 TATAGATGGGTTCGTACACAGCTCTAA-TAGTGACGGTCCCAATTCCACTACCATCATAT 265
| || | ||||||||||||||| | || || |||||| |||||||| ||||| ||||||
Sbjct 183 TGTAAACGGGTTCGTACACAGCGC-AATTAAAGACGGTACCAATTCCGCTACCGTCATAT 241
Query 266 TCCAGTGTCGTGGTGACTCTTACAAGTCTAACTGTCGAA--CCTGCTATGACACCGCTCT 323
|||| ||||| ||||||||||||| ||| || || | || ||||||||| |||||| ||
Sbjct 242 TCCAATGTCGGGGTGACTCTTACAGGTCCAAGTG-C-AACTCCTGCTATGCCACCGCACT 299
Query 324 GGCCGGGTTTCGTAAGAGATGTCCAAGAAACAAAGGTGGAATAATATGGTACGACCAATG 383
||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 300 CGCCGGGTTTCGTAAGAGATGTCCAAGAAACAAAGGAGGGATAATATGGTACGATCAATG 359
Query 384 TTTTCTCGATGTTAGTATGATCAATGACCTAGCCCCAAGGAA-GATCAATTACAAGGATA 442
|||||||||| |||||||||||||||| |||||||||||| | ||||||||||| |||
Sbjct 360 TTTTCTCGATATTAGTATGATCAATGAAGGAGCCCCAAGGAAAG-TCAATTACAAGAATA 418
Query 443 CTTTTGCTATGCACAACCCAAACAATGTGAGGGGGGATACAAAGATGTTCAGCAAGAAGA 502
|||| ||||||||||||||||||||||||| |||||||||||| |||| | ||||||||
Sbjct 419 CTTTCCCTATGCACAACCCAAACAATGTGAGAGGGGATACAAAGTTGTTTAACAAGAAGA 478
Query 503 CAAATGATTTCCTCCAACAGCTGATTGTGAAAGCTGATAAACCCGACATGGACGGCGTCG 562
|||||||||| ||||||||||||||| ||||||||||||| |||||| ||| | | |||
Sbjct 479 CAAATGATTTTTTCCAACAGCTGATTGCGAAAGCTGATAAAGCCGACAAGGATGACATCG 538
Query 563 AGTTGTTATATTATGCGGCGGGAGAGATGAGAATCGGGAGGGAA-AAACTGCATGCGATG 621
||||||||||||||||||| ||||||| ||||||||||| | || |||||| |||| |||
Sbjct 539 AGTTGTTATATTATGCGGCAGGAGAGAAGAGAATCGGGACG-AATAAACTGTATGCAATG 597
Query 622 GTGCAGTGTGCGAAAGACCTAGCGGACTGTAAGTCTTGTTTGGAATGGAGTTTCAAGG-A 680
||||||||| || | | | | | || ||| | |||||||| ||| | |
Sbjct 598 GTGCAGTGT---AA-G---T--C----T-T--GT-TTG---G-AATGGAGTATCA-GCCA 635
Query 681 GCTTTCTAAGTGCTGCGACGGTAAACGAGGAGCGAGATTTTTGGGTACAAGC-TGTAATC 739
||||||||||| ||||||||||||| |||||||||| ||||||||||| || |||||||
Sbjct 636 TCTTTCTAAGTGTTGCGACGGTAAACAAGGAGCGAGAGTTTTGGGTACA-GCCTGTAATC 694
Query 740 TTAGGTATGAGCTATATCCTTTTCTTAGGACTT 772
|||| ||||||||||||||||||||||||||||
Sbjct 695 TTAGTTATGAGCTATATCCTTTTCTTAGGACTT 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28554064833
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5