BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G22040.1 Length=774 Score E Sequences producing significant alignments: (Bits) Value Ahg319073 jgi|Araly1|319073|fgenesh1_pm.C_scaffold_3002089 697 0.0 > Ahg319073 jgi|Araly1|319073|fgenesh1_pm.C_scaffold_3002089 Length=729 Score = 697 bits (377), Expect = 0.0 Identities = 635/753 (84%), Gaps = 43/753 (6%) Strand=Plus/Plus Query 31 CTCGTTTCTTTCCATATCTTGGCCATACAACTCTTCATAC-CTAGCGTTGCATCACTGAA 89 ||||||||||||||||||||||| ||||||||| |||||| | |||||| |||| ||||| Sbjct 7 CTCGTTTCTTTCCATATCTTGGCTATACAACTCCTCATACGC-AGCGTTTCATCCCTGAA 65 Query 90 TCTTACAAATGTGTACCTTCACCACAAATGCCGGGTTGGTCAAGGTAAATACCACCCGGG 149 | |||| |||| ||| || |||||||||| ||||||| ||||| |||||||| || || Sbjct 66 TATTACTAATGAGTATCTGAACCACAAATGTCGGGTTGAACAAGGAAAATACCAGCCAGG 125 Query 150 AAGTAGA-TACGAGAAAGACTTCGACTCTCTCACCAGT-TTCGTCGCT-GCTAATAAGTT 206 |||| || |||||||||||| || ||||| ||||| || | |||||| | || || || Sbjct 126 AAGT-GAGTACGAGAAAGACCTCAACTCTATCACCGGTAAT-GTCGCTACCGAA-AAATT 182 Query 207 TATAGATGGGTTCGTACACAGCTCTAA-TAGTGACGGTCCCAATTCCACTACCATCATAT 265 | || | ||||||||||||||| | || || |||||| |||||||| ||||| |||||| Sbjct 183 TGTAAACGGGTTCGTACACAGCGC-AATTAAAGACGGTACCAATTCCGCTACCGTCATAT 241 Query 266 TCCAGTGTCGTGGTGACTCTTACAAGTCTAACTGTCGAA--CCTGCTATGACACCGCTCT 323 |||| ||||| ||||||||||||| ||| || || | || ||||||||| |||||| || Sbjct 242 TCCAATGTCGGGGTGACTCTTACAGGTCCAAGTG-C-AACTCCTGCTATGCCACCGCACT 299 Query 324 GGCCGGGTTTCGTAAGAGATGTCCAAGAAACAAAGGTGGAATAATATGGTACGACCAATG 383 ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| Sbjct 300 CGCCGGGTTTCGTAAGAGATGTCCAAGAAACAAAGGAGGGATAATATGGTACGATCAATG 359 Query 384 TTTTCTCGATGTTAGTATGATCAATGACCTAGCCCCAAGGAA-GATCAATTACAAGGATA 442 |||||||||| |||||||||||||||| |||||||||||| | ||||||||||| ||| Sbjct 360 TTTTCTCGATATTAGTATGATCAATGAAGGAGCCCCAAGGAAAG-TCAATTACAAGAATA 418 Query 443 CTTTTGCTATGCACAACCCAAACAATGTGAGGGGGGATACAAAGATGTTCAGCAAGAAGA 502 |||| ||||||||||||||||||||||||| |||||||||||| |||| | |||||||| Sbjct 419 CTTTCCCTATGCACAACCCAAACAATGTGAGAGGGGATACAAAGTTGTTTAACAAGAAGA 478 Query 503 CAAATGATTTCCTCCAACAGCTGATTGTGAAAGCTGATAAACCCGACATGGACGGCGTCG 562 |||||||||| ||||||||||||||| ||||||||||||| |||||| ||| | | ||| Sbjct 479 CAAATGATTTTTTCCAACAGCTGATTGCGAAAGCTGATAAAGCCGACAAGGATGACATCG 538 Query 563 AGTTGTTATATTATGCGGCGGGAGAGATGAGAATCGGGAGGGAA-AAACTGCATGCGATG 621 ||||||||||||||||||| ||||||| ||||||||||| | || |||||| |||| ||| Sbjct 539 AGTTGTTATATTATGCGGCAGGAGAGAAGAGAATCGGGACG-AATAAACTGTATGCAATG 597 Query 622 GTGCAGTGTGCGAAAGACCTAGCGGACTGTAAGTCTTGTTTGGAATGGAGTTTCAAGG-A 680 ||||||||| || | | | | | || ||| | |||||||| ||| | | Sbjct 598 GTGCAGTGT---AA-G---T--C----T-T--GT-TTG---G-AATGGAGTATCA-GCCA 635 Query 681 GCTTTCTAAGTGCTGCGACGGTAAACGAGGAGCGAGATTTTTGGGTACAAGC-TGTAATC 739 ||||||||||| ||||||||||||| |||||||||| ||||||||||| || ||||||| Sbjct 636 TCTTTCTAAGTGTTGCGACGGTAAACAAGGAGCGAGAGTTTTGGGTACA-GCCTGTAATC 694 Query 740 TTAGGTATGAGCTATATCCTTTTCTTAGGACTT 772 |||| |||||||||||||||||||||||||||| Sbjct 695 TTAGTTATGAGCTATATCCTTTTCTTAGGACTT 727 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28554064833 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5