BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22050.1
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318936 jgi|Araly1|318936|fgenesh1_pm.C_scaffold_3001952 464 4e-130
> Ahg318936 jgi|Araly1|318936|fgenesh1_pm.C_scaffold_3001952
Length=762
Score = 464 bits (251), Expect = 4e-130
Identities = 619/791 (78%), Gaps = 47/791 (6%)
Strand=Plus/Plus
Query 1 ATGTACTCTTCATATTCTCTATCAAAACGCCTCA-TTTATGTCCCTATCCTGGCCATCCA 59
||||||||||||||||||||||| |||||||| | ||| | |||||||| |||| || ||
Sbjct 1 ATGTACTCTTCATATTCTCTATCCAAACGCCT-AGTTTCTATCCCTATCTTGGCTATACA 59
Query 60 ATTCCTCCTCGTACGCAGCGTTTCATCACTAAACCTTACCAATGAGTATCTTAACCACAA 119
| |||| ||| |||||||||| || ||||| |||||||||||||| ||||||||||||||
Sbjct 60 ACTCCTTCTCATACGCAGCGTCTCGTCACTGAACCTTACCAATGACTATCTTAACCACAA 119
Query 120 ATGCTTCGTCAGTGAAGGGAAATATAAGCATGGTGATAAGTACGAGAATAACCTCAACGT 179
|||| |||||||| |||||||||||| || ||| |||||||||||| | ||||||||| |
Sbjct 120 ATGCCTCGTCAGTCAAGGGAAATATAGGCCTGGAGATAAGTACGAGGACAACCTCAACTT 179
Query 180 TCTCAACAAGAATGTCCTT-TCTTATGATCTTACTAG-CGGTTTTC-TACACGTTTCTCA 236
|||| || || || ||| || ||| || || | | || |||| ||||| | ||| |
Sbjct 180 TCTC-AC-CCAA-GT-CTTATCCTATAAT-TTTCCGGATGG-TTTCATACACATCTCTTA 233
Query 237 TGGCG-AGGGTCCTGATTCCGTCACCATCATATTACAATGTCGTGGCGACTCCTTCGGGT 295
||||| || || | || |||| || |||||||||| || || |||||||||| || |
Sbjct 234 TGGCGAAGCACCCAG-TTTCGTCGCCGTCATATTACAGTGCCGCGGCGACTCCTACGACT 292
Query 296 CGAATTGCCGCTCTTGCTATACCACCGCCATCGACGGGTTTCATAGGAGATGTCAGAGAA 355
| || |||| ||| |||||| |||||||| | |||| ||| ||||||||||||||| |
Sbjct 293 CCAAGTGCCTCTCCTGCTATGCCACCGCCCTTTCCGGGCTTCGTAGGAGATGTCAGAGGA 352
Query 356 ACAAAGGGGGAATTATATGGTACGACCAATGTTTTCTTGTT-ATTTCTACGATCAAACCC 414
||||||| || | ||||||||||| |||||||||| | || ||| | ||||||||
Sbjct 353 ACAAAGGAAGAGTAATATGGTACGATCAATGTTTTC-TCTTCATTAATTCGATCAAA--T 409
Query 415 CAACTCCCAAGGAAGATTGATTTCAAAAACACTTTCTCAATGCACAACCCAAACAACGTG 474
|| | ||| ||||||| |||| || || ||||||| |||||||||||||||||| ||
Sbjct 410 CATC-CCCGAGGAAGAACGATTACAGGAATGCTTTCTCTATGCACAACCCAAACAACATG 468
Query 475 AGC-AGTGAACCA-GG-ATCGTTTGACAAGATGAC-AAGGGATTTCCTCTACAAGCTGGT 530
| | || | | || || || ||| |||||| || || ||||||||||||| |||| |
Sbjct 469 ATCAAG-G-A-CACGGAATTGTTCAACAAGAAAACGAA-GGATTTCCTCTACGAGCTCAT 524
Query 531 GCAGAAAGCCTCT-TATCCAACCGTGGTCGAACACCAGT-CTACATATTATGCTGCGGGG 588
| | ||||| || | |||| | | | ||| | | | | | ||| || || |||
Sbjct 525 GTTGGAAGCCACTACACCCAA-C--AG--G-ACA--A-TGATGC-T-TTACGCAGCAGGG 573
Query 589 GAGAAAAAACTCGGGA-AAAGGAAGCTGTATGCAATGATGCAGTGTGCATC-GGACATAT 646
||||| || || |||| ||| ||| ||||||||||| |||||||||| | |||||||
Sbjct 574 GAGAAGAAGCTAGGGACAAA-GAAATTGTATGCAATGGTGCAGTGTGC-GCAAGACATAT 631
Query 647 TGCAATGTAAGGTTTGTTTGGAATGGTGTATCAGA-GAGCTTCCCAAGTGTTGTGATGGT 705
||| |||||||| ||||||||||||| |||||| | |||||| || |||| || | ||
Sbjct 632 TGCGATGTAAGGGTTGTTTGGAATGGAGTATCA-ATGAGCTTTCCGAGTGCTGCCACAGT 690
Query 706 AAACAAGGAGGGAGAATTTTGGGTA-TGAGTTGTAATCTTAGGTATGAGCTATACCCTTT 764
|||||||||| ||| ||||||| | ||| |||| ||||||||||||||||||||||||
Sbjct 691 AAACAAGGAGCAAGATTTTTGGGAACAGAG-TGTACTCTTAGGTATGAGCTATACCCTTT 749
Query 765 TCTTCGGCGTT 775
|||| || |||
Sbjct 750 TCTTAGGGGTT 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28668433584
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5