BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22070.1
Length=781
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479722 jgi|Araly1|479722|fgenesh2_kg.3__2423__AT3G22070.1 701 0.0
> Ahg479722 jgi|Araly1|479722|fgenesh2_kg.3__2423__AT3G22070.1
Length=632
Score = 701 bits (379), Expect = 0.0
Identities = 568/651 (87%), Gaps = 45/651 (7%)
Strand=Plus/Plus
Query 44 ATGCTCTGCTATGTCGGCAAAGCCACCAAGATTTTCATTTTCATCGTCACCGTCGTCTTC 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1 ATGCTCTGCTATGTCGGCAAAGCCACCAAGATTTTCATTTTCATCGTCACCGTCGCCGTC 60
Query 104 GTCATTGGCCTCGTCGTAGCCTTCGGTGTTCTCCGCCGTCACTCTCACCACTGCTCCGGC 163
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GTCATTGGCCTCGTCGTAGTTTTCGGTGTTCTCCGCCGTCACTCTCACCACTGTTCCGGC 120
Query 164 GACTATTGCTCATCTTCCACCGATCCCtcttcttcttcttcttcttcctcttcttctact 223
||| |||||||||||||||||||| | ||||||||||| |||| || ||| || ||
Sbjct 121 GACAATTGCTCATCTTCCACCGAT--C-CTTCTTCTTCTACTTC--CC-CTT-TTATA-- 171
Query 224 tctcctttcATAACTCCATTCCCAAACCCAAACCCGAATCCAAACCCGAACCCGCCTGTT 283
|| | ||| | ||| ||||||||| || || || || ||||||||| ||||||||
Sbjct 172 ACT-C---CAT-TC-CCAAACCCAAACCCGAATCCAAACCCGAACCCGAACTCGCCTGTT 225
Query 284 CTCGGATCTTCTCCTCCATCTCCAACTGA-T--TCATCAT---------CATCTACTTCA 331
|||||||||||||||||| ||||| |||| | ||||||| |||||||| ||
Sbjct 226 CTCGGATCTTCTCCTCCAGCTCCACCTGATTCATCATCATCACCAAACCCATCTACTCCA 285
Query 332 ATTTCCCCAAATCCGCCGGC-TCCGATCGTAAATCCGAAT---CCGCCT-C--CT---CC 381
|||||||||||||||||| | | ||||| | ||||| ||| || ||| | || ||
Sbjct 286 ATTTCCCCAAATCCGCCGTCGT-CGATCATTAATCCAAATCCACCTCCTCCGTCTACGCC 344
Query 382 --ATCC-ACTCCGAATCCTCCGCCGGAATTTTCACCTCCTCCGCCGGATT-TAGATACAA 437
|||| | |||||||||||||||| |||| ||||||||||||||||||| | || ||||
Sbjct 345 TAATCCGAATCCGAATCCTCCGCCGCAATTCTCACCTCCTCCGCCGGATTCT-GAAACAA 403
Query 438 CCACCGCACCTCCTCCGCCTTCAACGGATATACCAATCCCACCACCACCTCCGGCTCCAG 497
|||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||
Sbjct 404 CCACCGCACCTCCTCCGCCTTCAACGGATATACCAATCACACCACCACCTCCAGCACCAG 463
Query 498 TATCAGCATCTCCGCCGTTAACTCCGCCGAGCTCCGTCGTCACTAGTCCTGCTCCTGTGC 557
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 TATCGGCATCTCCACCGTTAACTCCGCCGAGCTCCGTCGTCACTAGTCCTGCTCCTGTGC 523
Query 558 ATGCCAAGCTAGTCAACGATTAAAGACAAAACCTTTGTAAATTCCGACATTTTTCTTTAC 617
||||||||||||||||||| ||||||| |||||||||||||||||||||||||| || ||
Sbjct 524 ATGCCAAGCTAGTCAACGACTAAAGACCAAACCTTTGTAAATTCCGACATTTTT-TT-AC 581
Query 618 TTCACATTTCCCAGTTCTTGAACTTGATTCGTTTGTTTTTTGTTATTCCTA 668
||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 582 TTCACATTTCCCAGTTCTTGAACTTGATTCGTTTGTTTTTTGTTATTTCTA 632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28820925252
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5