BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G22070.1 Length=781 Score E Sequences producing significant alignments: (Bits) Value Ahg479722 jgi|Araly1|479722|fgenesh2_kg.3__2423__AT3G22070.1 701 0.0 > Ahg479722 jgi|Araly1|479722|fgenesh2_kg.3__2423__AT3G22070.1 Length=632 Score = 701 bits (379), Expect = 0.0 Identities = 568/651 (87%), Gaps = 45/651 (7%) Strand=Plus/Plus Query 44 ATGCTCTGCTATGTCGGCAAAGCCACCAAGATTTTCATTTTCATCGTCACCGTCGTCTTC 103 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 1 ATGCTCTGCTATGTCGGCAAAGCCACCAAGATTTTCATTTTCATCGTCACCGTCGCCGTC 60 Query 104 GTCATTGGCCTCGTCGTAGCCTTCGGTGTTCTCCGCCGTCACTCTCACCACTGCTCCGGC 163 ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 61 GTCATTGGCCTCGTCGTAGTTTTCGGTGTTCTCCGCCGTCACTCTCACCACTGTTCCGGC 120 Query 164 GACTATTGCTCATCTTCCACCGATCCCtcttcttcttcttcttcttcctcttcttctact 223 ||| |||||||||||||||||||| | ||||||||||| |||| || ||| || || Sbjct 121 GACAATTGCTCATCTTCCACCGAT--C-CTTCTTCTTCTACTTC--CC-CTT-TTATA-- 171 Query 224 tctcctttcATAACTCCATTCCCAAACCCAAACCCGAATCCAAACCCGAACCCGCCTGTT 283 || | ||| | ||| ||||||||| || || || || ||||||||| |||||||| Sbjct 172 ACT-C---CAT-TC-CCAAACCCAAACCCGAATCCAAACCCGAACCCGAACTCGCCTGTT 225 Query 284 CTCGGATCTTCTCCTCCATCTCCAACTGA-T--TCATCAT---------CATCTACTTCA 331 |||||||||||||||||| ||||| |||| | ||||||| |||||||| || Sbjct 226 CTCGGATCTTCTCCTCCAGCTCCACCTGATTCATCATCATCACCAAACCCATCTACTCCA 285 Query 332 ATTTCCCCAAATCCGCCGGC-TCCGATCGTAAATCCGAAT---CCGCCT-C--CT---CC 381 |||||||||||||||||| | | ||||| | ||||| ||| || ||| | || || Sbjct 286 ATTTCCCCAAATCCGCCGTCGT-CGATCATTAATCCAAATCCACCTCCTCCGTCTACGCC 344 Query 382 --ATCC-ACTCCGAATCCTCCGCCGGAATTTTCACCTCCTCCGCCGGATT-TAGATACAA 437 |||| | |||||||||||||||| |||| ||||||||||||||||||| | || |||| Sbjct 345 TAATCCGAATCCGAATCCTCCGCCGCAATTCTCACCTCCTCCGCCGGATTCT-GAAACAA 403 Query 438 CCACCGCACCTCCTCCGCCTTCAACGGATATACCAATCCCACCACCACCTCCGGCTCCAG 497 |||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||| Sbjct 404 CCACCGCACCTCCTCCGCCTTCAACGGATATACCAATCACACCACCACCTCCAGCACCAG 463 Query 498 TATCAGCATCTCCGCCGTTAACTCCGCCGAGCTCCGTCGTCACTAGTCCTGCTCCTGTGC 557 |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 464 TATCGGCATCTCCACCGTTAACTCCGCCGAGCTCCGTCGTCACTAGTCCTGCTCCTGTGC 523 Query 558 ATGCCAAGCTAGTCAACGATTAAAGACAAAACCTTTGTAAATTCCGACATTTTTCTTTAC 617 ||||||||||||||||||| ||||||| |||||||||||||||||||||||||| || || Sbjct 524 ATGCCAAGCTAGTCAACGACTAAAGACCAAACCTTTGTAAATTCCGACATTTTT-TT-AC 581 Query 618 TTCACATTTCCCAGTTCTTGAACTTGATTCGTTTGTTTTTTGTTATTCCTA 668 ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 582 TTCACATTTCCCAGTTCTTGAACTTGATTCGTTTGTTTTTTGTTATTTCTA 632 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28820925252 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5