BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22080.1
Length=1947
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318939 jgi|Araly1|318939|fgenesh1_pm.C_scaffold_3001955 582 3e-165
Ahg899955 jgi|Araly1|899955|Al_scaffold_0004_605 449 3e-125
Ahg933102 jgi|Araly1|933102|scaffold_401090.1 139 7e-32
> Ahg318939 jgi|Araly1|318939|fgenesh1_pm.C_scaffold_3001955
Length=726
Score = 582 bits (315), Expect = 3e-165
Identities = 450/511 (88%), Gaps = 26/511 (5%)
Strand=Plus/Plus
Query 471 GGGAGATCAATGTGAATTTGGTGTTGATGTTC-TGGTTGCTCCATCCCTTACTAAATGGG 529
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 219 GGGAGATCAATGTGAATTTGGTGTTGATG-TCTTGGTTGCTCCATCCCTTACTAAATGGG 277
Query 530 AAGTCGTGTCCTTTAATCAGAAAATC-CTTGATCCCAAGTTCTCGTGGTCTCTCAAGAAA 588
|||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 278 AAGTCGTGTCCTTTAATCAGAAAATCTCTA-ATCCCAAGTTCTCGTGGACTCTCAAGAAA 336
Query 589 TTTAAAGAGTTAAAAGAGGAGTTATACAACTCAG-ACAAGTTTTTAGTAGGAGGAAGGCA 647
|||||||||||||||||||| || ||| |||||| | |||||||||||||||||||||||
Sbjct 337 TTTAAAGAGTTAAAAGAGGAATTTTACGACTCAGTA-AAGTTTTTAGTAGGAGGAAGGCA 395
Query 648 ATGGTTTCTAAAGGTGCATCCTAAGGGTGTTA--A-AGCACGAGACAACTCGTTATCCAT 704
|||||||||||||||| |||||||||||| || | |||||||||||| |||||||||||
Sbjct 396 ATGGTTTCTAAAGGTGTATCCTAAGGGTGATATTAGAGCACGAGACAAGTCGTTATCCAT 455
Query 705 TTATGTGTAT-TTAAGTGAA-AGTGAAACACTCAATGCAGAGGAGAAAATCTACACGCGA 762
|||| ||| | |||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 456 TTATTTGT-TCTTAAGT-AAGAGTGAAACACTCAACGCAGAGGAGAAAATCTACACGCGA 513
Query 763 GTACATCTTAGAGTTTTAGATCCGT-TTGGATCCATTCACCAAGCCG---GG-CAATGCA 817
|||||| ||||| |||||||||| | ||||||||| ||| || | || || || || |
Sbjct 514 GTACATGTTAGACTTTTAGATCC-TCTTGGATCCACTCATCACGTCGCTTGGACATTG-A 571
Query 818 ACTTCTGGCGCACAAATACAAATAAAAACCAAGGCTATGGTTGGCCTACTTTTGCGTCTT 877
|| |||| |||||| |||| | | | | |||||||| ||| || ||||||||||
Sbjct 572 CCTACTGGTACACAAAG-CAAA-ACA--C-A-GGCTATGGCTGGGATAAATTTGCGTCTT 625
Query 878 TAGATAAAGTGCGAGAGAAGTACTTGGACAATGAGGGTTCTTTGAACATAGAGATTGAAT 937
|||||||| | || | | |||||||||||||||||||||||||||| |||||||||||||
Sbjct 626 TAGATAAACTCCGGGCGCAGTACTTGGACAATGAGGGTTCTTTGAATATAGAGATTGAAT 685
Query 938 TTGCAGTTGTTTCTAGCACCAAATACTCTCC 968
||||||||||||| |||||||||||||||||
Sbjct 686 TTGCAGTTGTTTCAAGCACCAAATACTCTCC 716
Score = 158 bits (85), Expect = 2e-37
Identities = 103/112 (92%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 202 ATGTATGTGGAGATTGATAGCACAAACCTCTTGTCATCACCACTAACTGGCGTGTTTGCG 261
|||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||
Sbjct 1 ATGTATGTGGAGATTGATAGCACAAACCTCTTGTCAACGCCACTAACTGATGTGGTTGCA 60
Query 262 TATCTCGTATTCTTTGTCTACAACAAGAAAACAGACAAATACTTTACTATTA 313
| |||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 TGTCTCATATTCTTTGTTTACAACAAGAAAACAGACAAATACTTTACTATTA 112
> Ahg899955 jgi|Araly1|899955|Al_scaffold_0004_605
Length=885
Score = 449 bits (243), Expect = 3e-125
Identities = 441/535 (82%), Gaps = 20/535 (4%)
Strand=Plus/Plus
Query 1045 AGAGAACGTACTCCTAATTCTTACTCACTCAAGCTCCAAAACATCTCCCAAGTCGAGAAA 1104
||||||||| ||||| ||| || ||||| ||| |||||||| |||||||| || |||||
Sbjct 31 AGAGAACGTTCTCCTTCTTCCTATTCACTTAAGATCCAAAACTTCTCCCAACTCAAGAAA 90
Query 1105 TCAACTCTCTTCTCTGATGG-CAAGTATCAATCCCGTCTTTTCTCCTCTGGTGGATACAA 1163
||||| |||| |||||| || ||| |||||||| ||||||||||| ||||||||||||||
Sbjct 91 TCAACACTCTCCTCTGACGGCCAA-TATCAATCTCGTCTTTTCTCTTCTGGTGGATACAA 149
Query 1164 CTGGAGAATGATCATATACCCGAAAGGGAATCG-CAAAGACGATGGAAGTGGGTTTATTT 1222
||||||||||||||||||||| ||| |||| | ||| || | |||||||| |||||||
Sbjct 150 CTGGAGAATGATCATATACCC-AAATGGAAACAACAAGGATAACGGAAGTGGCTTTATTT 208
Query 1223 CAATGTATGTTGAAATAGATAGCACAA-GCCTTTTGACTACACCTACCA--CTGAGGTGT 1279
|||||||||| ||||||||| | | || |||| || | ||||| |||| | |||||||
Sbjct 209 CAATGTATGTGGAAATAGATGG-AGAAAGCCTCATGTCCACACC-ACCAAGC-GAGGTGT 265
Query 1280 TTGCCGATCTACGGTTTTTCGTATTTAACAAAAAAGAAAATAAGTACTATACTATTCAAC 1339
|||| ||| | ||||||||||| ||||| ||||| ||||| || || | ||||||||||
Sbjct 266 TTGCAGATGTTCGGTTTTTCGTCTTTAATAAAAACGAAAACAAATATTTTACTATTCAAG 325
Query 1340 ATGTAGAGTCGAAGCTATTCAAT-GCATTCAGAACAATATGGGGATTGGCGCAAGTGCTT 1398
|||| || ||||||| |||||| | || ||| | | ||||||||| | |||||||||
Sbjct 326 ATGTTGAATCGAAGCCGTTCAATAGT-TTAAGACCGGTGTGGGGATTGCCTCAAGTGCTT 384
Query 1399 CCAGTT-GATACATTCACTGATCCTAAAAACGGATATATTTTTGAGGGAGATCAATGCGA 1457
| |||| | |||||||| ||| || ||||| ||||||||||||| |||||||||||| ||
Sbjct 385 C-AGTTTGTTACATTCAATGACCCCAAAAATGGATATATTTTTGGGGGAGATCAATGTGA 443
Query 1458 GTTTGGTGTTGATGTCATTGTTGCTGCACCTCCTACTAATTGGGAAATTCA-CACTTTAC 1516
||||||||||||||||||||||||| |||||||||| || ||||||| | | | ||||
Sbjct 444 GTTTGGTGTTGATGTCATTGTTGCTCCACCTCCTACCAAATGGGAAACT-ATCTCTTTTG 502
Query 1517 ATG-AAGCACTAAGTCAACCCAA-GTTCTTTTGGACGGTCAAGAATTTCTCTGAG 1569
||| || ||| | | || |||| ||||| |||||| |||||||||||||||||
Sbjct 503 ATGCAAA-ACTTATT-AATCCAAAGTTCTCTTGGACTATCAAGAATTTCTCTGAG 555
> Ahg933102 jgi|Araly1|933102|scaffold_401090.1
Length=924
Score = 139 bits (75), Expect = 7e-32
Identities = 384/527 (73%), Gaps = 45/527 (9%)
Strand=Plus/Plus
Query 1378 TGGGGATTGGCGCAAGTGCTTCCAG-TTGA-TACATTCACTGATCCTAAAAACGGATATA 1435
||||||||| ||||||| ||||| | || | |||||||| || ||| |||| || |||
Sbjct 335 TGGGGATTGCCGCAAGTACTTCC-GCTT-AGTACATTCAAAGACCCTGAAAATGG--ATA 390
Query 1436 TTTTTGAGGGAGATCAATGCGAGTTTGGTGTTGATGTCATTGTTGCTGCACCTCCTACTA 1495
| | || || ||||||||||||||||||||||||||||||||| |||| ||||| |
Sbjct 391 TGTCTG-TCTAGGTCAATGCGAGTTTGGTGTTGATGTCATTGTTGCACCACCCCCTACCA 449
Query 1496 ATTGGGAAATTCACACTTTACATGAAGCACTAAGTCAACCC--A-A-GTTCTTTTGGACG 1551
|||||||||| | |||| ||||| || | || | || | | | ||| |||| |
Sbjct 450 ATTGGGAAATCCTTTCTTTTGATGAAAAAC-ACGTTTATCCTTATAAGATCTCTTGGCCT 508
Query 1552 GTCAAGAATTTCTCTGAGCTGAACAATA--AT-GTTTACACATCAGGCA-ATTTTTC-GA 1606
|| |||||| ||| |||| | | | | || || |||||||| | ||||| | |
Sbjct 509 GTTAAGAATATCTTTGAGAT-A-CTAGGGCATTGTC-ACACATCACAAAGATTTT-CAG- 563
Query 1607 TGAGAG-AAAGGAAATGGGTTCTA-AAGTTGTATCCCAAGGGGGACGTA-AA-AGGAGAC 1662
|| ||| |||| | ||||| | || || |||||||||||||| | | | || || |||
Sbjct 564 TGGGAGGAAAG-ACATGGGCTATAGAA-TTGTATCCCAAGGGA-A-GCAGAACAGCAGAT 619
Query 1663 CG-AA-AA-TGGTTATCCCT-TTATCT-A-TATCTCGATCAAAGTGAAACACTAAAGGAA 1716
|| || ||| ||||| | || ||| | | || | | | |||||||||| ||||||
Sbjct 620 TATAATAAATGGGTATCCATATT-TCTCACTG-CT-GCTGATTGTGAAACACTTAAGGAA 676
Query 1717 -AGTGAAAAGATTTTCGTGCAAGCTCAATTGCGAGTTTTAGACCCACGTGGATCCAATCA 1775
| ||||||||||||| ||||||| | |||||| ||||||| ||||| |||||||||||
Sbjct 677 GA-TGAAAAGATTTTCACGCAAGCTTACTTGCGAATTTTAGATCCACGAGGATCCAATCA 735
Query 1776 CGTGA-CACACAAAATTTCGTCTTGGTACACCAGCTCAAATACGGCTTGGGGATACAGAA 1834
| | | ||| | |||| | || |||| || || ||| | |||||||||||
Sbjct 736 CTT-ATCACGCTCAATTACCAAATGCTACAACAAATCGAATTCATCTTGGGGATACTTTC 794
Query 1835 AATTTGTGTCTCTAGCTGAAATTCCTAA-AGCTTACTTGGACAAGGA 1880
|||||||||| ||| |||| || || | |||||||||||| |||
Sbjct 795 GATTTGTGTCTATAGATGAACTTAGGAATA-CTTACTTGGACATGGA 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73171360645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5