BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G22090.1

Length=542
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479724 jgi|Araly1|479724|fgenesh2_kg.3__2425__AT3G22090.1         492    1e-138
  Ahg887847 jgi|Araly1|887847|Al_scaffold_0896_1                       117    9e-26 


> Ahg479724 jgi|Araly1|479724|fgenesh2_kg.3__2425__AT3G22090.1
Length=525

 Score =  492 bits (266),  Expect = 1e-138
 Identities = 394/448 (88%), Gaps = 40/448 (9%)
 Strand=Plus/Plus

Query  1    AAATCGACTCTTATT-CGTTTCTTCAAGCTCAAATCCCAACGACAATGGCGGTTCCGATT  59
            |||||| ||||| || ||||||||| |||||||||||||||| |||||||||||||||||
Sbjct  1    AAATCGTCTCTT-TTCCGTTTCTTCGAGCTCAAATCCCAACGTCAATGGCGGTTCCGATT  59

Query  60   CACTTCCTCATCAACTCTCCACCTGAATCATCCGACGAAGAGTACAACGG-TTCCGAAAT  118
            ||||| |||||||||||||||| ||||||||||||||||||||||||||| || ||| ||
Sbjct  60   CACTTTCTCATCAACTCTCCACATGAATCATCCGACGAAGAGTACAACGGCTT-CGAGAT  118

Query  119  TTCTAATTCATCTGAAGACGAATCAATGGAAGACGAATCGTCCGAGTTAGTAAACACAAA  178
            |||   ||||||||||||||| || ||||||||||||||||||||||||| |||||||||
Sbjct  119  TTC---TTCATCTGAAGACGAGTCCATGGAAGACGAATCGTCCGAGTTAGAAAACACAAA  175

Query  179  CGAAGG-----A------T-CTCTCTCCAATCTCGTAAACGAAG--A---A-ACTG-TGG  219
            || |||     |      | ||||||||||||||||||||||||  |   | | || |||
Sbjct  176  CGGAGGATCTCACTCTTCTCCTCTCTCCAATCTCGTAAACGAAGAAAGTGAGAGTGATGG  235

Query  220  -A---A-G--G-GTTTTGGGTTAAGTATCCGTATTTGAAGGAGTTAGTGGAGATTATTGT  271
             |   | |  | ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  236  TACTGAGGAAGAGTTTTGGGTTAAGTATCCGTATTTGAAGGAGCTAGTGGAGATTATTGT  295

Query  272  AGCTCAAGGTTTGATTTCTGAAGAAGTTGCTTTTGAGAGAGTCAAGCTTATTGGTGATGA  331
            ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct  296  AGCTCAAGGTTTGATTTCTGAAGAAGTAGCTTTTGAGAGAGTTAAGCTTATTGGTGATGA  355

Query  332  TAAAGCTAAAG----AG--TTGAATGATGGATGGAAAGCTTTGTGTCTTAAGGAACAGGA  385
            |||||||||||    ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct  356  TAAAGCTAAAGCTAAAGAATTGAATGATGGATGGAAAGCTTTGTGTCTTAAGGAACAGGA  415

Query  386  TTTGGGTAATCAGATGCTTGAGCTTCTT  413
            ||||||||||||||||||||||||||||
Sbjct  416  TTTGGGTAATCAGATGCTTGAGCTTCTT  443


> Ahg887847 jgi|Araly1|887847|Al_scaffold_0896_1
Length=183

 Score =  117 bits (63),  Expect = 9e-26
 Identities = 88/100 (88%), Gaps = 2/100 (2%)
 Strand=Plus/Plus

Query  252  GAGTTAGTGGAGATTATTGTAGCTCAAGGTTTGATTTCTGAAGAA-GTTGCTTTTGAGAG  310
            ||||| ||||| |||| ||| ||||||||| ||||||| |  ||| | ||||||||||||
Sbjct  67   GAGTTGGTGGAAATTAGTGTTGCTCAAGGTGTGATTTC-GGGGAAGGATGCTTTTGAGAG  125

Query  311  AGTCAAGCTTATTGGTGATGATAAAGCTAAAGAGTTGAAT  350
            ||||||||||||||||||||| || |||||||||||||||
Sbjct  126  AGTCAAGCTTATTGGTGATGACAAGGCTAAAGAGTTGAAT  165



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19764595102


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5