BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22100.1
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905233 jgi|Araly1|905233|Al_scaffold_0003_2361 652 0.0
> Ahg905233 jgi|Araly1|905233|Al_scaffold_0003_2361
Length=1038
Score = 652 bits (353), Expect = 0.0
Identities = 664/800 (83%), Gaps = 78/800 (10%)
Strand=Plus/Plus
Query 21 TTTCGACTCACTCACTGACTTACCACCGCTTCCTCCTTCCGATTTCACTCCTTCCAACGC 80
||| ||||| |||||||| |||||||||||||||||||||||||||||||| || | |
Sbjct 256 TTT-GACTCGCTCACTGAGTTACCACCGCTTCCTCCTTCCGATTTCACTCCCTCTT-C-C 312
Query 81 CTTCACCTTCCCCGACCAC-AACCTCGACTTTTC-CT-TC-C-T-C-GACTC-C------ 126
||||||||| |||||||| ||| ||||||| || || || | | | ||||| |
Sbjct 313 -TTCACCTTCTCCGACCACCAAC-TCGACTTGTCTCTCTCTCATGCTGACTCGCTCTTTC 370
Query 127 ---ACTC-----TGTCTCTCCTCAATCGGCACCATCTCTCTGAGTCCACTCGCTTGGAAC 178
|||| |||||||||||||||| ||||| ||| ||||||| |||||| | ||||
Sbjct 371 TCGACTCAACACTGTCTCTCCTCAATCGTCACCACCTCACTGAGTCAACTCGCCTCGAAC 430
Query 179 AGATTTTTTACGACTCCACTCACACTCAGCTCTTTCACAACGACGAcaccaccaccacca 238
| | ||||||||||||||||| ||||||||| |||||| | |||||||||| |
Sbjct 431 ATCTCTTTTACGACTCCACTCA------GCTCTTTCAAAACGACCTCGCCACCACCAC-A 483
Query 239 ccacaccGTTTCTCCACCTT-CCTGATCTCAAATCCATCGA-C--------GCCGTTGAA 288
||||||||||| ||| || || ||||| ||||||||||| | ||||| |||
Sbjct 484 --ACACCGTTTCTTCAC-TTACCCGATCTAAAATCCATCGAACAACCACCCGCCGTGGAA 540
Query 289 GAA---CCGACGACGATGAAGCTGTTTCCATCTCTCTCTCCTCCTCTTCC-CG-CC-G-C 341
||| ||||||||||||||||| |||||||||||||||||||||||||| | || | |
Sbjct 541 GAAGAACCGACGACGATGAAGCTCTTTCCATCTCTCTCTCCTCCTCTTCCTCTTCCCGAC 600
Query 342 -C-AAACGTC--A-GAAGCTTAACTCA-ACTTCCTCTTCAACAACCTCTGGATCTCCAAC 395
| ||||||| | |||||||||||| | |||||||||||||| ||| |||||||||||
Sbjct 601 GCTAAACGTCGCAAGAAGCTTAACTCGTA-TTCCTCTTCAACAAACTCCGGATCTCCAAC 659
Query 396 TGCGTCA--A--A--C------GACGGTGGTA-T--TATTACCAAACGACGGAAGATCTC 440
|||||| | | | |||||||||| | ||||||||||||| |||||||||
Sbjct 660 AGCGTCATCATCAAACACAAACGACGGTGGTACTGGTATTACCAAACGAAAGAAGATCTC 719
Query 441 AGACAAAATCAGATCCCTGGAGAAACTCATGCCGTGGGAGAG-AAAGATGAACTTAGCGA 499
||||||||||||||| |||||||||| ||||| ||||| | ||| |||| |||||||
Sbjct 720 TGACAAAATCAGATCCTTGGAGAAACTTATGCCATGGGAAAACAAA-ATGAGTTTAGCGA 778
Query 500 TGACTCTAGAAGAATCTCACAAATACATCAAGTTTCTTCAATCTCAGATTGCTTCACTCC 559
||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 779 TGATTCTAGAAGAATCTCACAGATACATCAAGTTTCTTCAATCTCAAATTGCTTCACTCA 838
Query 560 GTTGGATGCCTCTCGAATCTGTCTACAACACCGCCGGTGAAGTAGGAGAAACAGATTTGC 619
||||||||||||| ||||||||||||||||||||||| |||||||||||| | |||||||
Sbjct 839 GTTGGATGCCTCTTGAATCTGTCTACAACACCGCCGGAGAAGTAGGAGAATCCGATTTGC 898
Query 620 TCAAATCTCTGACACGTCAACAGATTCTTCAGGTTCTTGCGAATTCTCCAGGCTCACGAA 679
||||||| || |||||||||||||||||||| ||| |||||||||||||||| |||||||
Sbjct 899 TCAAATCGCTAACACGTCAACAGATTCTTCAAGTTATTGCGAATTCTCCAGGTTCACGAA 958
Query 680 ACGTACTCTCCTCTCGTGGTGTTTGTGTCTTCTCTTATGAACAGCTTCTCTCTCTCAAGA 739
||||||| ||||||| ||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 959 ACGTACTTTCCTCTCATGGTGTTTGTGTCTTCTCTTACGAACAGCTTCTTTCTCTCAAGA 1018
Query 740 CAATGTCGAGAAACCTCTGA 759
|||||||||||||| |||||
Sbjct 1019 CAATGTCGAGAAACTTCTGA 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27982221078
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5