BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22104.1
Length=2160
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479725 jgi|Araly1|479725|fgenesh2_kg.3__2426__AT3G22104.1 1142 0.0
> Ahg479725 jgi|Araly1|479725|fgenesh2_kg.3__2426__AT3G22104.1
Length=1671
Score = 1142 bits (618), Expect = 0.0
Identities = 699/738 (95%), Gaps = 5/738 (1%)
Strand=Plus/Plus
Query 165 ACTAATTTGTGGGTGCTTCTCTAATTGACTTGACAGACATCATAAGAGAAGACTTATATA 224
||||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||| |
Sbjct 82 ACTAATTTGTGGGTGCTTCACCAATAGACTTGACAGACATCAAAAGAGAAGACTTATACA 141
Query 225 GAATCTGACAATCACAAAACCAACAAAAGtttcttgcttctttgctctttgtcttctttc 284
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 AAATCTGACAATCACAAAACCAACAAAAGTTTCTTGCTTCTTTGCTCTTTGTCTTCTTTC 201
Query 285 tcttctcagcataaatccacacctctctctctACTGTTACTCACCTCTTTCACCACATTT 344
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 202 TCTTCTCAGCATAAATCCACACCTCTCTCTCCACTGTTACTCACTTCTTTCACCACATTT 261
Query 345 CTTTTCTCTTTTGGGGGAAGAATCAAGAAAGAAAGAGAGCTAGAATCTAGTTCTATCCAA 404
||||||||||||||||||| |||||||||| || ||||| ||||||||||||||| ||||
Sbjct 262 CTTTTCTCTTTTGGGGGAAAAATCAAGAAA-AA-GAGAGATAGAATCTAGTTCTACCCAA 319
Query 405 GAGTGTTTTTTAGTTTCTTTCTCCTTTTTGGGATATGGAAGCTTGTTGCTCTGATCTTGA 464
|||||||||| |||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 320 GAGTGTTTTT-AGTTTCTTTCTCTTTTTTTGGCTATGGAAGCTTGTTGCTCTGATCTTGA 378
Query 465 AGTAGACATCAATGGAGAACAAACTATCTTTCTCAATAAGCAAATCATATGTGCTTATTC 524
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 379 AGTAGACATCAATGGAGAAGAAACTATCTTTCTCAATAAGCAAATCATCTGTGCTTATTC 438
Query 525 TGGAACGTTAAG-AAAGCTTTTGGGGAAATCAACTAGTTCCAGTGGAAATCTCAAGGTGA 583
|||||||||||| ||| |||||||||||||||||| |||||| |||||||||||||||||
Sbjct 439 TGGAACGTTAAGGAAA-CTTTTGGGGAAATCAACTTGTTCCAATGGAAATCTCAAGGTGA 497
Query 584 TCTTCAATGATTTCCCCGGTGGAGCTGAGAGTTTCGAGTTTGTATCGAGGTTTTGCTACA 643
|||| ||||||||||||||||||| |||||||||||| |||| ||||| ||||||||||
Sbjct 498 TCTTTAATGATTTCCCCGGTGGAGGGGAGAGTTTCGAGCTTGTTTCGAGATTTTGCTACA 557
Query 644 ATGACGGTCGAGTAGCTGTGATGCCTTCGAATGTAGTTTTCTTGCATTGTGCTGCTAAGT 703
|| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 ATAACGGTGGATTAGCTGTGATGCCTTCGAATGTAGTTTTCTTGCATTGTGCTGCTAAGT 617
Query 704 TTATGGAAGTCACTAAAGTCTTGGAACAAACAGAGAAGTGTATGGAAGAGATTAGGTATT 763
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 618 TTATGGAAATCACTAAAGTCTTGGAACAAACAGAGAAGTGTATGGAAGAGATTCGGTATT 677
Query 764 GGGCTTGGCCAGAGGTTCTTCTTTGTCTAAAACAGTGTCAAGAAGTTGAAACATCGCCCG 823
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 678 GGGCTTGGCCAGAGGTTCTTCTCTGTTTAAAACAGTGTCAAGAAGTTGAAACATCGCCCG 737
Query 824 AAGTTGATTCTTTAGCCGCGAAACTGATGGATGCGTTGGTGGAGAAACTGTGTTTAACCA 883
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 738 AAGCTGATTCTTTAGCCGCGAAACTGATGGATGCGTTAGTGGAGAAACTGTGTTTAACTA 797
Query 884 TTGAAATGAGTCCTTCTA 901
||||||||||||||||||
Sbjct 798 TTGAAATGAGTCCTTCTA 815
Score = 1064 bits (576), Expect = 0.0
Identities = 769/855 (90%), Gaps = 42/855 (5%)
Strand=Plus/Plus
Query 1316 CAACACTAGACAATCTTCTTGTTCCATCTCCATCGAAATCGAGTCACTTGTACTATGTGA 1375
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 846 CAACACTAGACAATCTTCTTGTTACATCTCCATCGAAATCGAGTCACTTGTACTATGTGA 905
Query 1376 ATCTTGTTCTTAGATTCACAAAAGCTTTCCTAGATGGGGCAAGAAGTGGATTGCAATTGA 1435
|||| |||||||||||||||||||||||||| || || | |||| | |||||||||||||
Sbjct 906 ATCTCGTTCTTAGATTCACAAAAGCTTTCCTCGACGGAGAAAGAGGAGGATTGCAATTGA 965
Query 1436 AGAAAGTCTCAAGTTTGATTGATCAATACATAGCTGAAGTAGCACCTGATCCTTGCTTGA 1495
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 AGAAAGTCTCAAGCTTGATTGATCAATACATAGCTGAAGTAGCACCTGATCCTTGCTTGA 1025
Query 1496 AACCTTCAAAGTTTCTTTCTCTCATCACACTTGTTCCAGATTCAGCCAGAGAATCCCACG 1555
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1026 AACCTTCAAAGTTTCTGTCTCTCCTCACACTTGTTCCAGATTCAGCCAGAGAATCCCACG 1085
Query 1556 AAGATATATACCGTGCTATTGATATGTATCTCGAGGCTCACACAGGAACAACTGATGGCG 1615
|||| ||||| |||||||| ||||||||||||||||||||||||||| || ||||||||
Sbjct 1086 AAGAAATATATCGTGCTATCGATATGTATCTCGAGGCTCACACAGGATTAAATGATGGCG 1145
Query 1616 AAAAACTCAACTTGATACGAACTTTAAGTTACGAGAAGCTTTCAGGAGAATCAAGAGCTC 1675
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 1146 AAAAACTCAACTTGATACGAACATTAAGTTACGAAAAGCTTTCAGGAGAATCAAGAGCAC 1205
Query 1676 ACATTTCGCGTAAC-CAAAAGTTTCAGGCTATTGAGACACTAGATGaacaacaacaacaa 1734
||||||| |||||| | || ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1206 ACATTTCCCGTAACACGAA-GTTTCAGGCAATTGAGACACTAGATGAACAACAACAACAA 1264
Query 1735 caacaacaacaacaacaacaGAAGCAGCTCATACTCAGAATGGAGAAGGTTGAGACTTCA 1794
| | |||||||||||||||| ||||||||||| ||||| ||||
Sbjct 1265 C--C----------------GAAGCAGCTCATACTCCGAATGGAGAAGAATGAGATTTCA 1306
Query 1795 GGAGAAAACGAGAAGCTGAAGGAACATATCGAAGGGATTCAATGGAGGGTAATGGAATTG 1854
|||||||| |||||||||||||||||||| ||||||||||| ||| |||||||||| |||
Sbjct 1307 GGAGAAAAAGAGAAGCTGAAGGAACATATTGAAGGGATTCAGTGGCGGGTAATGGAGTTG 1366
Query 1855 GAGAGAGCTTGTTTGAAAATGCAGAATCAAATGGAAGTTATCAAGAAGAGATCCAAGAGC 1914
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1367 GAGAGAGCGTGTTTGAAAATGCAGAATCAAATGGAAGTTATCAAAAAGAGATCCAAGAGC 1426
Query 1915 TCGAGCAAAGGAAGTAATAGATCACTTCCTAAGCTCTGTTCTTGATT-AGTGAAGCTGTA 1973
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1427 TCGAGCAAAGGAAGTAACAGATCACTTCCTAAGCTCTGTTCTTGATTTAGTGAAGCTGTA 1486
Query 1974 AGCTTAC--GATCATATTTGTACATA--GAGTGATAGAGAGCATAAGGAGTCAA---TTA 2026
|||||| ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1487 -GCTTACAAGATCATATTTGTACATAAAGAGTGATAGAGAGCATAAGGAGTCAACAATTA 1545
Query 2027 TAGTTACCATTTGGTTCTTATGTTTCAGAGTATTTATCTTTTCTTGTGTTGTTTTCTTTG 2086
||||||| ||||| |||||||||||| | | ||||||||||||||||||| || |
Sbjct 1546 TAGTTACAATTTGTTTCTTATGTTTC----T-T--ATCTTTTCTTGTGTTGTTTACT--G 1596
Query 2087 TCACAA-AGTTGTGCGTAATGAAAAGTAAAGATAAATTCGTTTTTATGGAGATG---ATA 2142
|||||| |||||| ||||| |||||||||||||| ||||| ||| ||||||||| |||
Sbjct 1597 TCACAACAGTTGTTCGTAAGGAAAAGTAAAGATAGATTCGATTTGATGGAGATGTTGATA 1656
Query 2143 CAAACTTAAATCTAT 2157
|||||||||| ||||
Sbjct 1657 CAAACTTAAACCTAT 1671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81284582830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5